Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26325

Experiment: Benzalkonium Chloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26320 and AO356_26325 are separated by 27 nucleotidesAO356_26325 and AO356_26330 are separated by 1 nucleotidesAO356_26330 and AO356_26335 are separated by 67 nucleotides AO356_26320: AO356_26320 - protein CapI, at 5,961,964 to 5,962,935 _26320 AO356_26325: AO356_26325 - dolichol-phosphate mannosyltransferase, at 5,962,963 to 5,963,706 _26325 AO356_26330: AO356_26330 - Lipid A biosynthesis, N-terminal, at 5,963,708 to 5,964,001 _26330 AO356_26335: AO356_26335 - dolichyl-phosphate-mannose-protein mannosyltransferase, at 5,964,069 to 5,965,526 _26335 Position (kb) 5962 5963 5964Strain fitness (log2 ratio) -2 -1 0 1 2at 5962.069 kb on + strand, within AO356_26320at 5962.070 kb on - strand, within AO356_26320at 5962.070 kb on - strand, within AO356_26320at 5962.072 kb on + strand, within AO356_26320at 5962.072 kb on + strand, within AO356_26320at 5962.072 kb on + strand, within AO356_26320at 5962.073 kb on - strand, within AO356_26320at 5962.117 kb on + strand, within AO356_26320at 5962.176 kb on - strand, within AO356_26320at 5962.176 kb on - strand, within AO356_26320at 5962.176 kb on - strand, within AO356_26320at 5962.176 kb on - strand, within AO356_26320at 5962.176 kb on - strand, within AO356_26320at 5962.199 kb on - strand, within AO356_26320at 5962.355 kb on - strand, within AO356_26320at 5962.459 kb on + strand, within AO356_26320at 5962.510 kb on + strand, within AO356_26320at 5962.622 kb on - strand, within AO356_26320at 5962.702 kb on + strand, within AO356_26320at 5962.702 kb on + strand, within AO356_26320at 5962.703 kb on - strand, within AO356_26320at 5962.703 kb on - strand, within AO356_26320at 5962.921 kb on + strandat 5962.978 kb on + strandat 5962.978 kb on + strandat 5962.978 kb on + strandat 5962.979 kb on - strandat 5962.979 kb on - strandat 5962.979 kb on - strandat 5962.979 kb on - strandat 5962.979 kb on - strandat 5962.979 kb on - strandat 5963.200 kb on + strand, within AO356_26325at 5963.201 kb on - strand, within AO356_26325at 5963.502 kb on + strand, within AO356_26325at 5963.502 kb on + strand, within AO356_26325at 5963.599 kb on + strand, within AO356_26325at 5963.660 kb on + strandat 5963.661 kb on - strandat 5963.790 kb on - strand, within AO356_26330at 5963.798 kb on + strand, within AO356_26330at 5963.870 kb on + strand, within AO356_26330at 5963.879 kb on + strand, within AO356_26330at 5963.880 kb on - strand, within AO356_26330at 5964.193 kb on - strandat 5964.315 kb on + strand, within AO356_26335at 5964.316 kb on - strand, within AO356_26335at 5964.384 kb on + strand, within AO356_26335at 5964.393 kb on + strand, within AO356_26335at 5964.393 kb on + strand, within AO356_26335at 5964.393 kb on + strand, within AO356_26335at 5964.393 kb on + strand, within AO356_26335at 5964.393 kb on + strand, within AO356_26335at 5964.394 kb on - strand, within AO356_26335at 5964.394 kb on - strand, within AO356_26335at 5964.394 kb on - strand, within AO356_26335at 5964.456 kb on + strand, within AO356_26335at 5964.457 kb on - strand, within AO356_26335at 5964.457 kb on - strand, within AO356_26335at 5964.501 kb on + strand, within AO356_26335at 5964.502 kb on - strand, within AO356_26335at 5964.504 kb on + strand, within AO356_26335at 5964.505 kb on - strand, within AO356_26335at 5964.505 kb on - strand, within AO356_26335at 5964.588 kb on + strand, within AO356_26335

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml
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5,962,069 + AO356_26320 0.11 +0.6
5,962,070 - AO356_26320 0.11 +0.7
5,962,070 - AO356_26320 0.11 -1.0
5,962,072 + AO356_26320 0.11 -0.4
5,962,072 + AO356_26320 0.11 +0.9
5,962,072 + AO356_26320 0.11 +0.4
5,962,073 - AO356_26320 0.11 -2.7
5,962,117 + AO356_26320 0.16 +1.1
5,962,176 - AO356_26320 0.22 +0.5
5,962,176 - AO356_26320 0.22 -1.7
5,962,176 - AO356_26320 0.22 +1.0
5,962,176 - AO356_26320 0.22 -0.0
5,962,176 - AO356_26320 0.22 +0.1
5,962,199 - AO356_26320 0.24 -0.1
5,962,355 - AO356_26320 0.40 -1.9
5,962,459 + AO356_26320 0.51 +0.5
5,962,510 + AO356_26320 0.56 +0.2
5,962,622 - AO356_26320 0.68 -0.8
5,962,702 + AO356_26320 0.76 +1.0
5,962,702 + AO356_26320 0.76 +0.5
5,962,703 - AO356_26320 0.76 -0.5
5,962,703 - AO356_26320 0.76 -2.3
5,962,921 + -0.0
5,962,978 + -0.3
5,962,978 + +0.9
5,962,978 + -0.2
5,962,979 - +0.9
5,962,979 - +0.1
5,962,979 - +0.2
5,962,979 - -1.0
5,962,979 - +0.3
5,962,979 - -0.5
5,963,200 + AO356_26325 0.32 +0.0
5,963,201 - AO356_26325 0.32 -0.4
5,963,502 + AO356_26325 0.72 +0.3
5,963,502 + AO356_26325 0.72 -2.1
5,963,599 + AO356_26325 0.85 +0.1
5,963,660 + -0.3
5,963,661 - -0.4
5,963,790 - AO356_26330 0.28 +0.5
5,963,798 + AO356_26330 0.31 -0.6
5,963,870 + AO356_26330 0.55 -0.9
5,963,879 + AO356_26330 0.58 -2.1
5,963,880 - AO356_26330 0.59 +0.3
5,964,193 - +1.3
5,964,315 + AO356_26335 0.17 -0.4
5,964,316 - AO356_26335 0.17 -0.2
5,964,384 + AO356_26335 0.22 +0.8
5,964,393 + AO356_26335 0.22 -0.4
5,964,393 + AO356_26335 0.22 +0.1
5,964,393 + AO356_26335 0.22 +0.9
5,964,393 + AO356_26335 0.22 +2.1
5,964,393 + AO356_26335 0.22 -0.3
5,964,394 - AO356_26335 0.22 +0.1
5,964,394 - AO356_26335 0.22 +0.6
5,964,394 - AO356_26335 0.22 +0.8
5,964,456 + AO356_26335 0.27 +0.3
5,964,457 - AO356_26335 0.27 -0.7
5,964,457 - AO356_26335 0.27 -0.9
5,964,501 + AO356_26335 0.30 -0.6
5,964,502 - AO356_26335 0.30 +1.9
5,964,504 + AO356_26335 0.30 +0.6
5,964,505 - AO356_26335 0.30 -0.5
5,964,505 - AO356_26335 0.30 +0.3
5,964,588 + AO356_26335 0.36 +1.1

Or see this region's nucleotide sequence