Experiment: Benzalkonium Chloride 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25765 and AO356_25770 overlap by 4 nucleotides AO356_25770 and AO356_25775 are separated by 44 nucleotides AO356_25775 and AO356_25780 are separated by 205 nucleotides
AO356_25765: AO356_25765 - carnitine dehydratase, at 5,824,859 to 5,826,340
_25765
AO356_25770: AO356_25770 - 3-oxoadipate enol-lactonase, at 5,826,337 to 5,827,170
_25770
AO356_25775: AO356_25775 - peptide synthetase, at 5,827,215 to 5,827,805
_25775
AO356_25780: AO356_25780 - hypothetical protein, at 5,828,011 to 5,829,498
_25780
Position (kb)
5826
5827
5828 Strain fitness (log2 ratio)
-2
-1
0
1 at 5825.445 kb on + strand, within AO356_25765 at 5825.446 kb on - strand, within AO356_25765 at 5825.506 kb on - strand, within AO356_25765 at 5825.560 kb on + strand, within AO356_25765 at 5825.561 kb on - strand, within AO356_25765 at 5825.869 kb on - strand, within AO356_25765 at 5825.869 kb on - strand, within AO356_25765 at 5825.869 kb on - strand, within AO356_25765 at 5825.926 kb on + strand, within AO356_25765 at 5825.926 kb on + strand, within AO356_25765 at 5826.355 kb on + strand at 5826.428 kb on - strand, within AO356_25770 at 5826.438 kb on + strand, within AO356_25770 at 5826.438 kb on + strand, within AO356_25770 at 5826.438 kb on + strand, within AO356_25770 at 5826.439 kb on - strand, within AO356_25770 at 5826.439 kb on - strand, within AO356_25770 at 5826.584 kb on + strand, within AO356_25770 at 5826.584 kb on + strand, within AO356_25770 at 5826.584 kb on + strand, within AO356_25770 at 5826.611 kb on + strand, within AO356_25770 at 5826.612 kb on - strand, within AO356_25770 at 5826.612 kb on - strand, within AO356_25770 at 5826.692 kb on + strand, within AO356_25770 at 5826.692 kb on + strand, within AO356_25770 at 5827.127 kb on + strand at 5827.128 kb on - strand at 5827.255 kb on + strand at 5827.255 kb on + strand at 5827.255 kb on + strand at 5827.256 kb on - strand at 5827.363 kb on + strand, within AO356_25775 at 5827.363 kb on + strand, within AO356_25775 at 5827.363 kb on + strand, within AO356_25775 at 5827.363 kb on + strand, within AO356_25775 at 5827.364 kb on - strand, within AO356_25775 at 5827.565 kb on - strand, within AO356_25775 at 5827.774 kb on + strand at 5827.774 kb on + strand at 5827.774 kb on + strand at 5827.774 kb on + strand at 5827.775 kb on - strand at 5827.788 kb on - strand at 5827.827 kb on - strand at 5828.068 kb on + strand at 5828.069 kb on - strand at 5828.069 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml remove 5,825,445 + AO356_25765 0.40 +0.3 5,825,446 - AO356_25765 0.40 -0.4 5,825,506 - AO356_25765 0.44 +1.6 5,825,560 + AO356_25765 0.47 +1.1 5,825,561 - AO356_25765 0.47 +1.3 5,825,869 - AO356_25765 0.68 -0.2 5,825,869 - AO356_25765 0.68 +0.2 5,825,869 - AO356_25765 0.68 -0.5 5,825,926 + AO356_25765 0.72 +0.6 5,825,926 + AO356_25765 0.72 -0.1 5,826,355 + -0.9 5,826,428 - AO356_25770 0.11 +0.2 5,826,438 + AO356_25770 0.12 -0.1 5,826,438 + AO356_25770 0.12 +0.4 5,826,438 + AO356_25770 0.12 +1.0 5,826,439 - AO356_25770 0.12 +0.1 5,826,439 - AO356_25770 0.12 +0.8 5,826,584 + AO356_25770 0.30 -0.7 5,826,584 + AO356_25770 0.30 -0.5 5,826,584 + AO356_25770 0.30 +1.5 5,826,611 + AO356_25770 0.33 +1.2 5,826,612 - AO356_25770 0.33 -0.0 5,826,612 - AO356_25770 0.33 +0.0 5,826,692 + AO356_25770 0.43 -0.2 5,826,692 + AO356_25770 0.43 +0.4 5,827,127 + +0.2 5,827,128 - +0.6 5,827,255 + -0.6 5,827,255 + +0.8 5,827,255 + +0.6 5,827,256 - +0.0 5,827,363 + AO356_25775 0.25 -0.1 5,827,363 + AO356_25775 0.25 +0.7 5,827,363 + AO356_25775 0.25 +0.8 5,827,363 + AO356_25775 0.25 +0.5 5,827,364 - AO356_25775 0.25 +1.7 5,827,565 - AO356_25775 0.59 +0.2 5,827,774 + +1.1 5,827,774 + +0.8 5,827,774 + +0.2 5,827,774 + -0.0 5,827,775 - +1.1 5,827,788 - -0.5 5,827,827 - -0.5 5,828,068 + -0.1 5,828,069 - +0.3 5,828,069 - -2.3
Or see this region's nucleotide sequence