Experiment: Benzalkonium Chloride 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24795 and AO356_24800 overlap by 1 nucleotides AO356_24800 and AO356_24805 are separated by 509 nucleotides
AO356_24795: AO356_24795 - type II secretion system protein GspE, at 5,606,515 to 5,607,933
_24795
AO356_24800: AO356_24800 - type II secretion system protein GspF, at 5,607,933 to 5,609,144
_24800
AO356_24805: AO356_24805 - alkaline phosphatase, at 5,609,654 to 5,610,823
_24805
Position (kb)
5607
5608
5609
5610 Strain fitness (log2 ratio)
-2
-1
0
1 at 5607.284 kb on - strand, within AO356_24795 at 5607.350 kb on - strand, within AO356_24795 at 5608.392 kb on + strand, within AO356_24800 at 5608.393 kb on - strand, within AO356_24800 at 5608.410 kb on - strand, within AO356_24800 at 5608.444 kb on - strand, within AO356_24800 at 5608.497 kb on + strand, within AO356_24800 at 5608.498 kb on - strand, within AO356_24800 at 5608.650 kb on + strand, within AO356_24800 at 5608.650 kb on + strand, within AO356_24800 at 5608.650 kb on + strand, within AO356_24800 at 5608.650 kb on + strand, within AO356_24800 at 5608.651 kb on - strand, within AO356_24800 at 5609.069 kb on + strand at 5609.221 kb on + strand at 5609.523 kb on + strand at 5609.523 kb on + strand at 5609.623 kb on + strand at 5609.623 kb on + strand at 5609.623 kb on + strand at 5609.624 kb on - strand at 5609.628 kb on - strand at 5609.628 kb on - strand at 5609.628 kb on - strand at 5609.628 kb on - strand at 5609.628 kb on - strand at 5609.659 kb on + strand at 5609.746 kb on + strand at 5609.746 kb on + strand at 5609.747 kb on - strand at 5609.804 kb on + strand, within AO356_24805 at 5609.804 kb on + strand, within AO356_24805 at 5609.805 kb on - strand, within AO356_24805 at 5609.855 kb on + strand, within AO356_24805 at 5609.946 kb on - strand, within AO356_24805 at 5609.946 kb on - strand, within AO356_24805 at 5609.946 kb on - strand, within AO356_24805 at 5609.946 kb on - strand, within AO356_24805 at 5609.946 kb on - strand, within AO356_24805
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml remove 5,607,284 - AO356_24795 0.54 +0.0 5,607,350 - AO356_24795 0.59 -1.0 5,608,392 + AO356_24800 0.38 -0.5 5,608,393 - AO356_24800 0.38 +0.5 5,608,410 - AO356_24800 0.39 -1.9 5,608,444 - AO356_24800 0.42 +0.5 5,608,497 + AO356_24800 0.47 +0.0 5,608,498 - AO356_24800 0.47 +0.0 5,608,650 + AO356_24800 0.59 +0.0 5,608,650 + AO356_24800 0.59 +1.1 5,608,650 + AO356_24800 0.59 +0.8 5,608,650 + AO356_24800 0.59 +1.1 5,608,651 - AO356_24800 0.59 +0.7 5,609,069 + +0.2 5,609,221 + -0.6 5,609,523 + +0.9 5,609,523 + -0.4 5,609,623 + +0.3 5,609,623 + +1.6 5,609,623 + -0.6 5,609,624 - -1.8 5,609,628 - -1.0 5,609,628 - +0.1 5,609,628 - +0.1 5,609,628 - -1.0 5,609,628 - +0.5 5,609,659 + +1.2 5,609,746 + +1.2 5,609,746 + +0.1 5,609,747 - -0.0 5,609,804 + AO356_24805 0.13 -0.9 5,609,804 + AO356_24805 0.13 -2.2 5,609,805 - AO356_24805 0.13 -0.3 5,609,855 + AO356_24805 0.17 -0.0 5,609,946 - AO356_24805 0.25 -0.4 5,609,946 - AO356_24805 0.25 +1.7 5,609,946 - AO356_24805 0.25 -0.3 5,609,946 - AO356_24805 0.25 +0.8 5,609,946 - AO356_24805 0.25 +0.1
Or see this region's nucleotide sequence