Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24635

Experiment: Benzalkonium Chloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24630 and AO356_24635 are separated by 191 nucleotidesAO356_24635 and AO356_24640 overlap by 44 nucleotides AO356_24630: AO356_24630 - exonuclease SbcD, at 5,570,731 to 5,571,975 _24630 AO356_24635: AO356_24635 - hypothetical protein, at 5,572,167 to 5,572,364 _24635 AO356_24640: AO356_24640 - protein BatD, at 5,572,321 to 5,573,958 _24640 Position (kb) 5572 5573Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5571.308 kb on + strand, within AO356_24630at 5571.308 kb on + strand, within AO356_24630at 5571.308 kb on + strand, within AO356_24630at 5571.309 kb on - strand, within AO356_24630at 5571.309 kb on - strand, within AO356_24630at 5571.309 kb on - strand, within AO356_24630at 5571.309 kb on - strand, within AO356_24630at 5571.309 kb on - strand, within AO356_24630at 5571.504 kb on - strand, within AO356_24630at 5571.785 kb on + strand, within AO356_24630at 5571.851 kb on - strandat 5571.851 kb on - strandat 5572.083 kb on + strandat 5572.322 kb on + strandat 5572.322 kb on + strandat 5572.323 kb on - strandat 5572.323 kb on - strandat 5572.331 kb on + strandat 5572.728 kb on - strand, within AO356_24640at 5573.345 kb on + strand, within AO356_24640at 5573.346 kb on - strand, within AO356_24640at 5573.346 kb on - strand, within AO356_24640

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml
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5,571,308 + AO356_24630 0.46 -0.5
5,571,308 + AO356_24630 0.46 -0.6
5,571,308 + AO356_24630 0.46 -0.0
5,571,309 - AO356_24630 0.46 -0.9
5,571,309 - AO356_24630 0.46 +0.4
5,571,309 - AO356_24630 0.46 +1.0
5,571,309 - AO356_24630 0.46 +0.2
5,571,309 - AO356_24630 0.46 +0.4
5,571,504 - AO356_24630 0.62 -1.3
5,571,785 + AO356_24630 0.85 +0.4
5,571,851 - -2.3
5,571,851 - -0.9
5,572,083 + +0.4
5,572,322 + -1.1
5,572,322 + +0.3
5,572,323 - +0.2
5,572,323 - +0.2
5,572,331 + -4.7
5,572,728 - AO356_24640 0.25 -4.0
5,573,345 + AO356_24640 0.63 -2.4
5,573,346 - AO356_24640 0.63 -2.6
5,573,346 - AO356_24640 0.63 -3.5

Or see this region's nucleotide sequence