Experiment: Benzalkonium Chloride 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24375 and AO356_24380 overlap by 4 nucleotides AO356_24380 and AO356_24385 are separated by 458 nucleotides
AO356_24375: AO356_24375 - type VI secretion protein, at 5,503,498 to 5,504,574
_24375
AO356_24380: AO356_24380 - hydroxyacid dehydrogenase, at 5,504,571 to 5,505,524
_24380
AO356_24385: AO356_24385 - serine/threonine protein kinase, at 5,505,983 to 5,507,263
_24385
Position (kb) 5504
5505
5506 Strain fitness (log2 ratio) -2
-1
0
1 at 5503.918 kb on + strand, within AO356_24375 at 5504.021 kb on + strand, within AO356_24375 at 5504.021 kb on + strand, within AO356_24375 at 5504.022 kb on - strand, within AO356_24375 at 5504.022 kb on - strand, within AO356_24375 at 5504.219 kb on - strand, within AO356_24375 at 5504.262 kb on - strand, within AO356_24375 at 5504.706 kb on + strand, within AO356_24380 at 5504.984 kb on - strand, within AO356_24380 at 5505.016 kb on + strand, within AO356_24380 at 5505.481 kb on + strand at 5505.482 kb on - strand at 5505.575 kb on - strand at 5505.672 kb on + strand at 5505.857 kb on - strand at 5506.119 kb on + strand, within AO356_24385 at 5506.193 kb on + strand, within AO356_24385 at 5506.193 kb on + strand, within AO356_24385 at 5506.193 kb on + strand, within AO356_24385 at 5506.193 kb on + strand, within AO356_24385 at 5506.194 kb on - strand, within AO356_24385 at 5506.194 kb on - strand, within AO356_24385 at 5506.194 kb on - strand, within AO356_24385 at 5506.308 kb on - strand, within AO356_24385 at 5506.341 kb on - strand, within AO356_24385 at 5506.503 kb on - strand, within AO356_24385 at 5506.503 kb on - strand, within AO356_24385 at 5506.503 kb on - strand, within AO356_24385
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml remove 5,503,918 + AO356_24375 0.39 -1.4 5,504,021 + AO356_24375 0.49 -2.4 5,504,021 + AO356_24375 0.49 +0.2 5,504,022 - AO356_24375 0.49 +1.0 5,504,022 - AO356_24375 0.49 -1.1 5,504,219 - AO356_24375 0.67 -1.7 5,504,262 - AO356_24375 0.71 -2.2 5,504,706 + AO356_24380 0.14 -0.7 5,504,984 - AO356_24380 0.43 -0.8 5,505,016 + AO356_24380 0.47 -0.2 5,505,481 + +0.5 5,505,482 - -1.2 5,505,575 - -0.5 5,505,672 + +0.9 5,505,857 - -0.5 5,506,119 + AO356_24385 0.11 -0.3 5,506,193 + AO356_24385 0.16 +1.4 5,506,193 + AO356_24385 0.16 -0.0 5,506,193 + AO356_24385 0.16 +0.5 5,506,193 + AO356_24385 0.16 -0.6 5,506,194 - AO356_24385 0.16 -0.1 5,506,194 - AO356_24385 0.16 -0.1 5,506,194 - AO356_24385 0.16 -0.4 5,506,308 - AO356_24385 0.25 +0.9 5,506,341 - AO356_24385 0.28 +0.2 5,506,503 - AO356_24385 0.41 +1.3 5,506,503 - AO356_24385 0.41 -0.0 5,506,503 - AO356_24385 0.41 +1.7
Or see this region's nucleotide sequence