Experiment: Benzalkonium Chloride 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24360 and AO356_24365 are separated by 18 nucleotides AO356_24365 and AO356_24370 overlap by 4 nucleotides AO356_24370 and AO356_24375 overlap by 4 nucleotides
AO356_24360: AO356_24360 - type VI secretion protein, at 5,497,566 to 5,498,897
_24360
AO356_24365: AO356_24365 - type VI secretion system protein ImpK, at 5,498,916 to 5,499,680
_24365
AO356_24370: AO356_24370 - type VI secretion system protein ImpL, at 5,499,677 to 5,503,501
_24370
AO356_24375: AO356_24375 - type VI secretion protein, at 5,503,498 to 5,504,574
_24375
Position (kb)
5499
5500
5501
5502
5503
5504 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5498.739 kb on + strand, within AO356_24360 at 5498.739 kb on + strand, within AO356_24360 at 5498.916 kb on - strand at 5499.154 kb on - strand, within AO356_24365 at 5499.154 kb on - strand, within AO356_24365 at 5499.246 kb on + strand, within AO356_24365 at 5499.246 kb on + strand, within AO356_24365 at 5499.246 kb on + strand, within AO356_24365 at 5499.246 kb on + strand, within AO356_24365 at 5499.247 kb on - strand, within AO356_24365 at 5499.247 kb on - strand, within AO356_24365 at 5499.456 kb on + strand, within AO356_24365 at 5499.457 kb on - strand, within AO356_24365 at 5499.706 kb on - strand at 5499.706 kb on - strand at 5499.791 kb on + strand at 5499.791 kb on + strand at 5500.208 kb on + strand, within AO356_24370 at 5500.209 kb on - strand, within AO356_24370 at 5500.209 kb on - strand, within AO356_24370 at 5500.209 kb on - strand, within AO356_24370 at 5500.209 kb on - strand, within AO356_24370 at 5500.311 kb on - strand, within AO356_24370 at 5500.434 kb on - strand, within AO356_24370 at 5500.541 kb on + strand, within AO356_24370 at 5500.541 kb on + strand, within AO356_24370 at 5500.542 kb on - strand, within AO356_24370 at 5500.542 kb on - strand, within AO356_24370 at 5500.831 kb on + strand, within AO356_24370 at 5500.832 kb on - strand, within AO356_24370 at 5500.899 kb on - strand, within AO356_24370 at 5501.135 kb on + strand, within AO356_24370 at 5501.136 kb on - strand, within AO356_24370 at 5501.136 kb on - strand, within AO356_24370 at 5501.307 kb on - strand, within AO356_24370 at 5501.332 kb on + strand, within AO356_24370 at 5501.333 kb on - strand, within AO356_24370 at 5501.423 kb on + strand, within AO356_24370 at 5501.424 kb on - strand, within AO356_24370 at 5501.424 kb on - strand, within AO356_24370 at 5501.424 kb on - strand, within AO356_24370 at 5501.940 kb on - strand, within AO356_24370 at 5501.951 kb on + strand, within AO356_24370 at 5501.960 kb on + strand, within AO356_24370 at 5501.960 kb on + strand, within AO356_24370 at 5501.960 kb on + strand, within AO356_24370 at 5501.960 kb on + strand, within AO356_24370 at 5501.960 kb on + strand, within AO356_24370 at 5501.961 kb on - strand, within AO356_24370 at 5501.961 kb on - strand, within AO356_24370 at 5501.976 kb on + strand, within AO356_24370 at 5501.977 kb on - strand, within AO356_24370 at 5501.977 kb on - strand, within AO356_24370 at 5502.099 kb on + strand, within AO356_24370 at 5502.099 kb on + strand, within AO356_24370 at 5502.306 kb on - strand, within AO356_24370 at 5502.488 kb on + strand, within AO356_24370 at 5502.671 kb on + strand, within AO356_24370 at 5502.720 kb on - strand, within AO356_24370 at 5502.720 kb on - strand, within AO356_24370 at 5502.720 kb on - strand, within AO356_24370 at 5502.732 kb on - strand, within AO356_24370 at 5503.214 kb on + strand at 5503.286 kb on + strand at 5503.287 kb on - strand at 5503.287 kb on - strand at 5503.287 kb on - strand at 5503.918 kb on + strand, within AO356_24375 at 5504.021 kb on + strand, within AO356_24375 at 5504.021 kb on + strand, within AO356_24375 at 5504.022 kb on - strand, within AO356_24375 at 5504.022 kb on - strand, within AO356_24375 at 5504.219 kb on - strand, within AO356_24375 at 5504.262 kb on - strand, within AO356_24375
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml remove 5,498,739 + AO356_24360 0.88 -0.2 5,498,739 + AO356_24360 0.88 +0.5 5,498,916 - -0.2 5,499,154 - AO356_24365 0.31 -0.1 5,499,154 - AO356_24365 0.31 -0.4 5,499,246 + AO356_24365 0.43 -0.1 5,499,246 + AO356_24365 0.43 +0.7 5,499,246 + AO356_24365 0.43 +1.4 5,499,246 + AO356_24365 0.43 +0.3 5,499,247 - AO356_24365 0.43 -0.2 5,499,247 - AO356_24365 0.43 +0.1 5,499,456 + AO356_24365 0.71 -1.1 5,499,457 - AO356_24365 0.71 +0.8 5,499,706 - +1.1 5,499,706 - -0.8 5,499,791 + -0.1 5,499,791 + -0.0 5,500,208 + AO356_24370 0.14 +0.7 5,500,209 - AO356_24370 0.14 +0.3 5,500,209 - AO356_24370 0.14 +0.6 5,500,209 - AO356_24370 0.14 -1.1 5,500,209 - AO356_24370 0.14 +0.7 5,500,311 - AO356_24370 0.17 -0.3 5,500,434 - AO356_24370 0.20 -0.1 5,500,541 + AO356_24370 0.23 -0.3 5,500,541 + AO356_24370 0.23 -2.2 5,500,542 - AO356_24370 0.23 +0.7 5,500,542 - AO356_24370 0.23 +0.8 5,500,831 + AO356_24370 0.30 +0.2 5,500,832 - AO356_24370 0.30 -1.1 5,500,899 - AO356_24370 0.32 -1.4 5,501,135 + AO356_24370 0.38 +0.8 5,501,136 - AO356_24370 0.38 +0.9 5,501,136 - AO356_24370 0.38 -0.9 5,501,307 - AO356_24370 0.43 +0.4 5,501,332 + AO356_24370 0.43 -0.8 5,501,333 - AO356_24370 0.43 +0.6 5,501,423 + AO356_24370 0.46 +1.9 5,501,424 - AO356_24370 0.46 +0.1 5,501,424 - AO356_24370 0.46 -0.3 5,501,424 - AO356_24370 0.46 -2.1 5,501,940 - AO356_24370 0.59 -0.4 5,501,951 + AO356_24370 0.59 -2.5 5,501,960 + AO356_24370 0.60 +1.4 5,501,960 + AO356_24370 0.60 -1.9 5,501,960 + AO356_24370 0.60 +0.2 5,501,960 + AO356_24370 0.60 +1.3 5,501,960 + AO356_24370 0.60 +1.8 5,501,961 - AO356_24370 0.60 +1.0 5,501,961 - AO356_24370 0.60 +0.5 5,501,976 + AO356_24370 0.60 +0.3 5,501,977 - AO356_24370 0.60 +0.5 5,501,977 - AO356_24370 0.60 -0.1 5,502,099 + AO356_24370 0.63 -0.8 5,502,099 + AO356_24370 0.63 -1.2 5,502,306 - AO356_24370 0.69 +1.0 5,502,488 + AO356_24370 0.73 -0.3 5,502,671 + AO356_24370 0.78 -0.2 5,502,720 - AO356_24370 0.80 +0.4 5,502,720 - AO356_24370 0.80 -0.1 5,502,720 - AO356_24370 0.80 +0.1 5,502,732 - AO356_24370 0.80 +0.5 5,503,214 + +0.5 5,503,286 + -0.7 5,503,287 - +1.0 5,503,287 - -0.1 5,503,287 - +0.8 5,503,918 + AO356_24375 0.39 -1.4 5,504,021 + AO356_24375 0.49 -2.4 5,504,021 + AO356_24375 0.49 +0.2 5,504,022 - AO356_24375 0.49 +1.0 5,504,022 - AO356_24375 0.49 -1.1 5,504,219 - AO356_24375 0.67 -1.7 5,504,262 - AO356_24375 0.71 -2.2
Or see this region's nucleotide sequence