Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23780

Experiment: Benzalkonium Chloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23775 and AO356_23780 are separated by 15 nucleotidesAO356_23780 and AO356_23785 are separated by 29 nucleotidesAO356_23785 and AO356_23790 are separated by 90 nucleotides AO356_23775: AO356_23775 - transcriptional regulator, at 5,335,004 to 5,335,954 _23775 AO356_23780: AO356_23780 - carbonic anhydrase, at 5,335,970 to 5,336,629 _23780 AO356_23785: AO356_23785 - hypothetical protein, at 5,336,659 to 5,336,907 _23785 AO356_23790: AO356_23790 - cyanate hydratase, at 5,336,998 to 5,337,465 _23790 Position (kb) 5335 5336 5337Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5335.011 kb on + strandat 5335.011 kb on + strandat 5335.011 kb on + strandat 5335.012 kb on - strandat 5335.313 kb on + strand, within AO356_23775at 5335.314 kb on - strand, within AO356_23775at 5335.314 kb on - strand, within AO356_23775at 5335.314 kb on - strand, within AO356_23775at 5335.361 kb on - strand, within AO356_23775at 5335.426 kb on - strand, within AO356_23775at 5335.426 kb on - strand, within AO356_23775at 5335.530 kb on - strand, within AO356_23775at 5335.530 kb on - strand, within AO356_23775at 5335.530 kb on - strand, within AO356_23775at 5335.530 kb on - strand, within AO356_23775at 5335.530 kb on - strand, within AO356_23775at 5335.530 kb on - strand, within AO356_23775at 5335.530 kb on - strand, within AO356_23775at 5335.530 kb on - strand, within AO356_23775at 5335.609 kb on + strand, within AO356_23775at 5335.609 kb on + strand, within AO356_23775at 5335.610 kb on - strand, within AO356_23775at 5335.625 kb on + strand, within AO356_23775at 5335.625 kb on + strand, within AO356_23775at 5335.626 kb on - strand, within AO356_23775at 5335.626 kb on - strand, within AO356_23775at 5335.626 kb on - strand, within AO356_23775at 5335.826 kb on + strand, within AO356_23775at 5335.826 kb on + strand, within AO356_23775at 5335.826 kb on + strand, within AO356_23775at 5335.826 kb on + strand, within AO356_23775at 5335.826 kb on + strand, within AO356_23775at 5335.826 kb on + strand, within AO356_23775at 5335.827 kb on - strand, within AO356_23775at 5335.827 kb on - strand, within AO356_23775at 5335.827 kb on - strand, within AO356_23775at 5335.827 kb on - strand, within AO356_23775at 5335.827 kb on - strand, within AO356_23775at 5335.827 kb on - strand, within AO356_23775at 5336.086 kb on - strand, within AO356_23780at 5336.086 kb on - strand, within AO356_23780at 5336.382 kb on + strand, within AO356_23780at 5336.421 kb on + strand, within AO356_23780at 5336.421 kb on + strand, within AO356_23780at 5336.422 kb on - strand, within AO356_23780at 5336.422 kb on - strand, within AO356_23780at 5336.422 kb on - strand, within AO356_23780at 5336.422 kb on - strand, within AO356_23780at 5336.649 kb on + strandat 5336.649 kb on + strandat 5336.650 kb on - strandat 5336.650 kb on - strandat 5336.691 kb on - strand, within AO356_23785at 5336.691 kb on - strand, within AO356_23785at 5336.727 kb on - strand, within AO356_23785at 5336.810 kb on + strand, within AO356_23785at 5336.811 kb on - strand, within AO356_23785at 5336.816 kb on + strand, within AO356_23785at 5336.817 kb on - strand, within AO356_23785at 5336.929 kb on + strandat 5336.930 kb on - strandat 5336.949 kb on + strandat 5337.158 kb on + strand, within AO356_23790at 5337.158 kb on + strand, within AO356_23790at 5337.158 kb on + strand, within AO356_23790at 5337.159 kb on - strand, within AO356_23790at 5337.159 kb on - strand, within AO356_23790at 5337.176 kb on + strand, within AO356_23790at 5337.177 kb on - strand, within AO356_23790at 5337.186 kb on - strand, within AO356_23790at 5337.186 kb on - strand, within AO356_23790at 5337.341 kb on + strand, within AO356_23790at 5337.341 kb on + strand, within AO356_23790at 5337.341 kb on + strand, within AO356_23790at 5337.342 kb on - strand, within AO356_23790at 5337.446 kb on + strandat 5337.471 kb on - strandat 5337.567 kb on - strandat 5337.605 kb on + strandat 5337.606 kb on - strandat 5337.606 kb on - strandat 5337.607 kb on + strandat 5337.607 kb on + strandat 5337.608 kb on - strandat 5337.616 kb on + strandat 5337.617 kb on - strandat 5337.617 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml
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5,335,011 + -1.1
5,335,011 + +0.3
5,335,011 + -0.2
5,335,012 - +0.3
5,335,313 + AO356_23775 0.32 +0.4
5,335,314 - AO356_23775 0.33 -0.4
5,335,314 - AO356_23775 0.33 +0.8
5,335,314 - AO356_23775 0.33 -1.5
5,335,361 - AO356_23775 0.38 -1.0
5,335,426 - AO356_23775 0.44 -0.6
5,335,426 - AO356_23775 0.44 -1.3
5,335,530 - AO356_23775 0.55 +0.1
5,335,530 - AO356_23775 0.55 -0.4
5,335,530 - AO356_23775 0.55 -0.3
5,335,530 - AO356_23775 0.55 +0.8
5,335,530 - AO356_23775 0.55 -0.3
5,335,530 - AO356_23775 0.55 +0.9
5,335,530 - AO356_23775 0.55 +0.4
5,335,530 - AO356_23775 0.55 -1.5
5,335,609 + AO356_23775 0.64 +1.1
5,335,609 + AO356_23775 0.64 -1.3
5,335,610 - AO356_23775 0.64 +0.6
5,335,625 + AO356_23775 0.65 +0.9
5,335,625 + AO356_23775 0.65 +0.8
5,335,626 - AO356_23775 0.65 -0.7
5,335,626 - AO356_23775 0.65 +0.4
5,335,626 - AO356_23775 0.65 -0.9
5,335,826 + AO356_23775 0.86 -1.1
5,335,826 + AO356_23775 0.86 +0.8
5,335,826 + AO356_23775 0.86 -0.2
5,335,826 + AO356_23775 0.86 +0.6
5,335,826 + AO356_23775 0.86 +0.4
5,335,826 + AO356_23775 0.86 +1.9
5,335,827 - AO356_23775 0.87 +0.8
5,335,827 - AO356_23775 0.87 +0.3
5,335,827 - AO356_23775 0.87 -0.6
5,335,827 - AO356_23775 0.87 +1.1
5,335,827 - AO356_23775 0.87 +1.2
5,335,827 - AO356_23775 0.87 -1.1
5,336,086 - AO356_23780 0.18 -2.2
5,336,086 - AO356_23780 0.18 -0.7
5,336,382 + AO356_23780 0.62 -0.8
5,336,421 + AO356_23780 0.68 -1.6
5,336,421 + AO356_23780 0.68 -0.8
5,336,422 - AO356_23780 0.68 -0.1
5,336,422 - AO356_23780 0.68 -0.4
5,336,422 - AO356_23780 0.68 -0.0
5,336,422 - AO356_23780 0.68 +1.5
5,336,649 + -0.3
5,336,649 + +0.1
5,336,650 - +0.4
5,336,650 - +0.6
5,336,691 - AO356_23785 0.13 -0.0
5,336,691 - AO356_23785 0.13 -0.2
5,336,727 - AO356_23785 0.27 +1.5
5,336,810 + AO356_23785 0.61 +0.0
5,336,811 - AO356_23785 0.61 -1.7
5,336,816 + AO356_23785 0.63 +0.5
5,336,817 - AO356_23785 0.63 +0.1
5,336,929 + -0.0
5,336,930 - -0.6
5,336,949 + +0.5
5,337,158 + AO356_23790 0.34 +0.2
5,337,158 + AO356_23790 0.34 -1.1
5,337,158 + AO356_23790 0.34 +0.0
5,337,159 - AO356_23790 0.34 -2.5
5,337,159 - AO356_23790 0.34 -0.8
5,337,176 + AO356_23790 0.38 +0.2
5,337,177 - AO356_23790 0.38 -3.3
5,337,186 - AO356_23790 0.40 +0.8
5,337,186 - AO356_23790 0.40 -1.3
5,337,341 + AO356_23790 0.73 +1.5
5,337,341 + AO356_23790 0.73 -0.8
5,337,341 + AO356_23790 0.73 +0.4
5,337,342 - AO356_23790 0.74 -1.1
5,337,446 + -0.6
5,337,471 - +1.1
5,337,567 - +0.9
5,337,605 + -0.3
5,337,606 - -1.2
5,337,606 - -0.5
5,337,607 + +0.8
5,337,607 + +0.2
5,337,608 - +0.4
5,337,616 + -0.3
5,337,617 - +1.0
5,337,617 - -0.2

Or see this region's nucleotide sequence