Experiment: Benzalkonium Chloride 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23430 and AO356_23435 are separated by 14 nucleotides AO356_23435 and AO356_23440 overlap by 8 nucleotides AO356_23440 and AO356_23445 are separated by 245 nucleotides
AO356_23430: AO356_23430 - NAD-dependent deacetylase, at 5,254,131 to 5,254,886
_23430
AO356_23435: AO356_23435 - hypothetical protein, at 5,254,901 to 5,255,380
_23435
AO356_23440: AO356_23440 - calpastatin, at 5,255,373 to 5,255,801
_23440
AO356_23445: AO356_23445 - hypothetical protein, at 5,256,047 to 5,256,829
_23445
Position (kb)
5254
5255
5256 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5253.918 kb on + strand at 5253.918 kb on + strand at 5253.919 kb on - strand at 5253.985 kb on - strand at 5254.041 kb on - strand at 5254.165 kb on + strand at 5254.165 kb on + strand at 5254.165 kb on + strand at 5254.165 kb on + strand at 5254.166 kb on - strand at 5254.166 kb on - strand at 5254.166 kb on - strand at 5254.166 kb on - strand at 5254.217 kb on + strand, within AO356_23430 at 5254.218 kb on - strand, within AO356_23430 at 5254.223 kb on + strand, within AO356_23430 at 5254.223 kb on + strand, within AO356_23430 at 5254.223 kb on + strand, within AO356_23430 at 5254.224 kb on - strand, within AO356_23430 at 5254.224 kb on - strand, within AO356_23430 at 5254.678 kb on + strand, within AO356_23430 at 5254.678 kb on + strand, within AO356_23430 at 5254.678 kb on + strand, within AO356_23430 at 5254.679 kb on - strand, within AO356_23430 at 5254.909 kb on + strand at 5254.909 kb on + strand at 5254.909 kb on + strand at 5254.910 kb on - strand at 5254.910 kb on - strand at 5254.910 kb on - strand at 5254.910 kb on - strand at 5255.000 kb on + strand, within AO356_23435 at 5255.000 kb on + strand, within AO356_23435 at 5255.001 kb on - strand, within AO356_23435 at 5255.078 kb on + strand, within AO356_23435 at 5255.078 kb on + strand, within AO356_23435 at 5255.097 kb on + strand, within AO356_23435 at 5255.310 kb on + strand, within AO356_23435 at 5255.311 kb on - strand, within AO356_23435 at 5255.370 kb on + strand at 5255.374 kb on + strand at 5255.374 kb on + strand at 5255.374 kb on + strand at 5255.375 kb on - strand at 5255.375 kb on - strand at 5255.399 kb on + strand at 5255.399 kb on + strand at 5255.400 kb on - strand at 5255.400 kb on - strand at 5255.400 kb on - strand at 5255.403 kb on + strand at 5255.403 kb on + strand at 5255.404 kb on - strand at 5255.404 kb on - strand at 5255.456 kb on - strand, within AO356_23440 at 5255.456 kb on - strand, within AO356_23440 at 5255.647 kb on + strand, within AO356_23440 at 5255.650 kb on + strand, within AO356_23440 at 5255.650 kb on + strand, within AO356_23440 at 5255.650 kb on + strand, within AO356_23440 at 5255.650 kb on + strand, within AO356_23440 at 5255.651 kb on - strand, within AO356_23440 at 5255.651 kb on - strand, within AO356_23440 at 5255.651 kb on - strand, within AO356_23440 at 5255.682 kb on + strand, within AO356_23440 at 5255.682 kb on + strand, within AO356_23440 at 5255.733 kb on + strand, within AO356_23440 at 5255.755 kb on + strand, within AO356_23440 at 5255.755 kb on + strand, within AO356_23440 at 5255.755 kb on + strand, within AO356_23440 at 5255.756 kb on - strand, within AO356_23440 at 5255.801 kb on + strand at 5255.801 kb on + strand at 5255.801 kb on + strand at 5255.801 kb on + strand at 5255.802 kb on - strand at 5255.900 kb on - strand at 5255.940 kb on + strand at 5255.940 kb on + strand at 5255.941 kb on - strand at 5255.941 kb on - strand at 5255.941 kb on - strand at 5255.942 kb on + strand at 5255.942 kb on + strand at 5255.942 kb on + strand at 5255.943 kb on - strand at 5255.957 kb on - strand at 5255.959 kb on - strand at 5255.986 kb on + strand at 5255.986 kb on + strand at 5255.986 kb on + strand at 5255.986 kb on + strand at 5255.986 kb on + strand at 5255.987 kb on - strand at 5256.025 kb on + strand at 5256.026 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml remove 5,253,918 + -0.0 5,253,918 + +0.9 5,253,919 - -0.1 5,253,985 - -0.4 5,254,041 - -0.6 5,254,165 + +0.6 5,254,165 + +1.3 5,254,165 + -2.8 5,254,165 + -0.1 5,254,166 - -1.0 5,254,166 - -0.2 5,254,166 - +0.6 5,254,166 - +0.5 5,254,217 + AO356_23430 0.11 -0.7 5,254,218 - AO356_23430 0.12 -0.2 5,254,223 + AO356_23430 0.12 +0.7 5,254,223 + AO356_23430 0.12 +0.9 5,254,223 + AO356_23430 0.12 +1.8 5,254,224 - AO356_23430 0.12 -0.8 5,254,224 - AO356_23430 0.12 +0.5 5,254,678 + AO356_23430 0.72 -0.1 5,254,678 + AO356_23430 0.72 +0.4 5,254,678 + AO356_23430 0.72 +0.4 5,254,679 - AO356_23430 0.72 +0.8 5,254,909 + +0.2 5,254,909 + +0.0 5,254,909 + -1.3 5,254,910 - +0.7 5,254,910 - +0.9 5,254,910 - +0.4 5,254,910 - +1.4 5,255,000 + AO356_23435 0.21 +0.8 5,255,000 + AO356_23435 0.21 -0.2 5,255,001 - AO356_23435 0.21 +0.7 5,255,078 + AO356_23435 0.37 +0.9 5,255,078 + AO356_23435 0.37 +0.9 5,255,097 + AO356_23435 0.41 -0.8 5,255,310 + AO356_23435 0.85 +0.9 5,255,311 - AO356_23435 0.85 +0.4 5,255,370 + +0.7 5,255,374 + -0.2 5,255,374 + -1.3 5,255,374 + -0.4 5,255,375 - +0.5 5,255,375 - -0.4 5,255,399 + +0.4 5,255,399 + -0.0 5,255,400 - -0.2 5,255,400 - -0.1 5,255,400 - +2.0 5,255,403 + -0.6 5,255,403 + -0.7 5,255,404 - -0.0 5,255,404 - -0.8 5,255,456 - AO356_23440 0.19 -1.2 5,255,456 - AO356_23440 0.19 +0.2 5,255,647 + AO356_23440 0.64 +0.2 5,255,650 + AO356_23440 0.65 -0.4 5,255,650 + AO356_23440 0.65 -0.0 5,255,650 + AO356_23440 0.65 +1.3 5,255,650 + AO356_23440 0.65 -0.0 5,255,651 - AO356_23440 0.65 -0.4 5,255,651 - AO356_23440 0.65 +0.7 5,255,651 - AO356_23440 0.65 -0.1 5,255,682 + AO356_23440 0.72 +1.0 5,255,682 + AO356_23440 0.72 +1.2 5,255,733 + AO356_23440 0.84 +0.8 5,255,755 + AO356_23440 0.89 +0.3 5,255,755 + AO356_23440 0.89 -0.6 5,255,755 + AO356_23440 0.89 -0.0 5,255,756 - AO356_23440 0.89 +1.1 5,255,801 + -0.5 5,255,801 + +0.8 5,255,801 + +0.7 5,255,801 + -1.2 5,255,802 - +0.7 5,255,900 - -0.3 5,255,940 + +0.6 5,255,940 + +0.7 5,255,941 - +1.2 5,255,941 - +0.5 5,255,941 - -0.8 5,255,942 + -0.9 5,255,942 + +0.4 5,255,942 + -0.3 5,255,943 - -0.0 5,255,957 - +0.4 5,255,959 - +2.0 5,255,986 + +0.4 5,255,986 + -1.2 5,255,986 + -0.4 5,255,986 + -0.3 5,255,986 + -0.8 5,255,987 - -1.1 5,256,025 + -0.4 5,256,026 - -0.3
Or see this region's nucleotide sequence