Experiment: Benzalkonium Chloride 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22870 and AO356_22875 are separated by 188 nucleotides AO356_22875 and AO356_22880 are separated by 41 nucleotides
AO356_22870: AO356_22870 - glycerate kinase, at 5,104,250 to 5,105,386
_22870
AO356_22875: AO356_22875 - chemotaxis protein, at 5,105,575 to 5,107,200
_22875
AO356_22880: AO356_22880 - aspartate aminotransferase, at 5,107,242 to 5,108,429
_22880
Position (kb)
5105
5106
5107
5108 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5104.584 kb on - strand, within AO356_22870 at 5104.584 kb on - strand, within AO356_22870 at 5104.584 kb on - strand, within AO356_22870 at 5105.249 kb on + strand, within AO356_22870 at 5105.250 kb on - strand, within AO356_22870 at 5105.250 kb on - strand, within AO356_22870 at 5105.400 kb on + strand at 5105.400 kb on + strand at 5105.400 kb on + strand at 5105.449 kb on - strand at 5105.492 kb on - strand at 5105.516 kb on + strand at 5105.516 kb on + strand at 5105.529 kb on - strand at 5105.583 kb on - strand at 5105.657 kb on + strand at 5105.878 kb on + strand, within AO356_22875 at 5105.917 kb on + strand, within AO356_22875 at 5105.918 kb on - strand, within AO356_22875 at 5105.948 kb on - strand, within AO356_22875 at 5106.022 kb on - strand, within AO356_22875 at 5106.066 kb on + strand, within AO356_22875 at 5106.067 kb on - strand, within AO356_22875 at 5106.086 kb on + strand, within AO356_22875 at 5106.086 kb on + strand, within AO356_22875 at 5106.087 kb on - strand, within AO356_22875 at 5106.087 kb on - strand, within AO356_22875 at 5106.087 kb on - strand, within AO356_22875 at 5106.087 kb on - strand, within AO356_22875 at 5106.127 kb on + strand, within AO356_22875 at 5106.127 kb on + strand, within AO356_22875 at 5106.128 kb on - strand, within AO356_22875 at 5106.128 kb on - strand, within AO356_22875 at 5106.128 kb on - strand, within AO356_22875 at 5107.203 kb on + strand at 5107.204 kb on - strand at 5107.239 kb on + strand at 5107.239 kb on + strand at 5107.239 kb on + strand at 5107.239 kb on + strand at 5107.239 kb on + strand at 5107.239 kb on + strand at 5107.239 kb on + strand at 5107.240 kb on - strand at 5107.240 kb on - strand at 5107.240 kb on - strand at 5107.240 kb on - strand at 5107.240 kb on - strand at 5107.240 kb on - strand at 5107.298 kb on + strand at 5107.435 kb on - strand, within AO356_22880 at 5107.511 kb on - strand, within AO356_22880 at 5107.617 kb on + strand, within AO356_22880 at 5107.617 kb on + strand, within AO356_22880 at 5107.617 kb on + strand, within AO356_22880 at 5107.617 kb on + strand, within AO356_22880 at 5107.617 kb on + strand, within AO356_22880 at 5107.618 kb on - strand, within AO356_22880 at 5107.618 kb on - strand, within AO356_22880 at 5107.618 kb on - strand, within AO356_22880 at 5107.618 kb on - strand, within AO356_22880 at 5107.618 kb on - strand, within AO356_22880 at 5107.626 kb on + strand, within AO356_22880 at 5107.626 kb on + strand, within AO356_22880 at 5107.627 kb on - strand, within AO356_22880 at 5107.860 kb on + strand, within AO356_22880 at 5107.860 kb on + strand, within AO356_22880 at 5107.861 kb on - strand, within AO356_22880 at 5107.861 kb on - strand, within AO356_22880 at 5107.861 kb on - strand, within AO356_22880 at 5107.861 kb on - strand, within AO356_22880 at 5107.875 kb on + strand, within AO356_22880 at 5107.875 kb on + strand, within AO356_22880 at 5107.875 kb on + strand, within AO356_22880 at 5107.875 kb on + strand, within AO356_22880 at 5107.876 kb on - strand, within AO356_22880 at 5107.876 kb on - strand, within AO356_22880
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml remove 5,104,584 - AO356_22870 0.29 +0.8 5,104,584 - AO356_22870 0.29 -0.2 5,104,584 - AO356_22870 0.29 -2.2 5,105,249 + AO356_22870 0.88 -0.1 5,105,250 - AO356_22870 0.88 +0.8 5,105,250 - AO356_22870 0.88 -0.7 5,105,400 + +0.5 5,105,400 + +0.4 5,105,400 + +0.1 5,105,449 - +0.6 5,105,492 - +1.6 5,105,516 + -0.3 5,105,516 + +0.8 5,105,529 - +0.1 5,105,583 - +0.6 5,105,657 + -0.8 5,105,878 + AO356_22875 0.19 +0.6 5,105,917 + AO356_22875 0.21 -0.0 5,105,918 - AO356_22875 0.21 +0.4 5,105,948 - AO356_22875 0.23 +0.5 5,106,022 - AO356_22875 0.27 +0.8 5,106,066 + AO356_22875 0.30 -1.2 5,106,067 - AO356_22875 0.30 +0.4 5,106,086 + AO356_22875 0.31 -0.6 5,106,086 + AO356_22875 0.31 -0.4 5,106,087 - AO356_22875 0.31 -0.2 5,106,087 - AO356_22875 0.31 +0.2 5,106,087 - AO356_22875 0.31 +1.7 5,106,087 - AO356_22875 0.31 -1.5 5,106,127 + AO356_22875 0.34 +0.2 5,106,127 + AO356_22875 0.34 -0.2 5,106,128 - AO356_22875 0.34 -0.5 5,106,128 - AO356_22875 0.34 -0.7 5,106,128 - AO356_22875 0.34 -0.3 5,107,203 + -0.2 5,107,204 - -0.7 5,107,239 + -0.8 5,107,239 + -0.4 5,107,239 + -1.9 5,107,239 + -1.7 5,107,239 + +0.6 5,107,239 + -0.2 5,107,239 + +1.9 5,107,240 - -0.8 5,107,240 - +1.1 5,107,240 - +1.7 5,107,240 - -0.1 5,107,240 - +0.3 5,107,240 - -0.6 5,107,298 + +1.2 5,107,435 - AO356_22880 0.16 +0.2 5,107,511 - AO356_22880 0.23 -0.2 5,107,617 + AO356_22880 0.32 +0.3 5,107,617 + AO356_22880 0.32 +1.1 5,107,617 + AO356_22880 0.32 -0.0 5,107,617 + AO356_22880 0.32 -0.3 5,107,617 + AO356_22880 0.32 +0.2 5,107,618 - AO356_22880 0.32 -1.5 5,107,618 - AO356_22880 0.32 +0.5 5,107,618 - AO356_22880 0.32 -0.2 5,107,618 - AO356_22880 0.32 -1.0 5,107,618 - AO356_22880 0.32 -0.1 5,107,626 + AO356_22880 0.32 -1.5 5,107,626 + AO356_22880 0.32 -1.2 5,107,627 - AO356_22880 0.32 -1.5 5,107,860 + AO356_22880 0.52 +0.7 5,107,860 + AO356_22880 0.52 +0.6 5,107,861 - AO356_22880 0.52 -0.9 5,107,861 - AO356_22880 0.52 -1.1 5,107,861 - AO356_22880 0.52 -0.2 5,107,861 - AO356_22880 0.52 -0.1 5,107,875 + AO356_22880 0.53 +0.8 5,107,875 + AO356_22880 0.53 -0.9 5,107,875 + AO356_22880 0.53 +0.6 5,107,875 + AO356_22880 0.53 +1.6 5,107,876 - AO356_22880 0.53 -0.9 5,107,876 - AO356_22880 0.53 -0.5
Or see this region's nucleotide sequence