Experiment: Benzalkonium Chloride 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22830 and AO356_22835 are separated by 231 nucleotides AO356_22835 and AO356_22840 are separated by 246 nucleotides
AO356_22830: AO356_22830 - diguanylate phosphodiesterase, at 5,093,773 to 5,095,317
_22830
AO356_22835: AO356_22835 - LysR family transcriptional regulator, at 5,095,549 to 5,096,412
_22835
AO356_22840: AO356_22840 - multidrug transporter, at 5,096,659 to 5,097,603
_22840
Position (kb)
5095
5096
5097 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5094.621 kb on - strand, within AO356_22830 at 5094.635 kb on + strand, within AO356_22830 at 5094.635 kb on + strand, within AO356_22830 at 5094.635 kb on + strand, within AO356_22830 at 5094.636 kb on - strand, within AO356_22830 at 5094.636 kb on - strand, within AO356_22830 at 5094.670 kb on + strand, within AO356_22830 at 5094.670 kb on + strand, within AO356_22830 at 5094.670 kb on + strand, within AO356_22830 at 5094.671 kb on - strand, within AO356_22830 at 5094.671 kb on - strand, within AO356_22830 at 5094.671 kb on - strand, within AO356_22830 at 5094.671 kb on - strand, within AO356_22830 at 5094.881 kb on + strand, within AO356_22830 at 5094.948 kb on - strand, within AO356_22830 at 5094.998 kb on + strand, within AO356_22830 at 5094.998 kb on + strand, within AO356_22830 at 5094.999 kb on - strand, within AO356_22830 at 5094.999 kb on - strand, within AO356_22830 at 5094.999 kb on - strand, within AO356_22830 at 5095.108 kb on + strand, within AO356_22830 at 5095.108 kb on + strand, within AO356_22830 at 5095.108 kb on + strand, within AO356_22830 at 5095.108 kb on + strand, within AO356_22830 at 5095.109 kb on - strand, within AO356_22830 at 5095.109 kb on - strand, within AO356_22830 at 5095.109 kb on - strand, within AO356_22830 at 5095.109 kb on - strand, within AO356_22830 at 5095.109 kb on - strand, within AO356_22830 at 5095.109 kb on - strand, within AO356_22830 at 5095.217 kb on + strand at 5095.275 kb on - strand at 5095.335 kb on - strand at 5095.372 kb on + strand at 5095.372 kb on + strand at 5095.372 kb on + strand at 5095.372 kb on + strand at 5095.372 kb on + strand at 5095.372 kb on + strand at 5095.372 kb on + strand at 5095.372 kb on + strand at 5095.372 kb on + strand at 5095.372 kb on + strand at 5095.372 kb on + strand at 5095.373 kb on - strand at 5095.373 kb on - strand at 5095.373 kb on - strand at 5095.373 kb on - strand at 5095.373 kb on - strand at 5095.373 kb on - strand at 5095.373 kb on - strand at 5095.373 kb on - strand at 5096.462 kb on - strand at 5096.462 kb on - strand at 5096.462 kb on - strand at 5096.462 kb on - strand at 5096.497 kb on - strand at 5096.604 kb on + strand at 5096.604 kb on + strand at 5096.604 kb on + strand at 5096.604 kb on + strand at 5096.605 kb on - strand at 5096.707 kb on + strand at 5096.707 kb on + strand at 5096.708 kb on - strand at 5096.947 kb on + strand, within AO356_22840 at 5096.947 kb on + strand, within AO356_22840 at 5096.948 kb on - strand, within AO356_22840 at 5096.948 kb on - strand, within AO356_22840 at 5096.948 kb on - strand, within AO356_22840 at 5096.948 kb on - strand, within AO356_22840 at 5096.948 kb on - strand, within AO356_22840 at 5096.959 kb on + strand, within AO356_22840 at 5096.959 kb on + strand, within AO356_22840 at 5096.960 kb on - strand, within AO356_22840 at 5096.960 kb on - strand, within AO356_22840 at 5096.960 kb on - strand, within AO356_22840 at 5096.960 kb on - strand, within AO356_22840 at 5096.960 kb on - strand, within AO356_22840 at 5096.960 kb on - strand, within AO356_22840 at 5096.960 kb on - strand, within AO356_22840 at 5096.960 kb on - strand, within AO356_22840 at 5097.128 kb on + strand, within AO356_22840 at 5097.128 kb on + strand, within AO356_22840 at 5097.128 kb on + strand, within AO356_22840 at 5097.128 kb on + strand, within AO356_22840 at 5097.128 kb on + strand, within AO356_22840 at 5097.129 kb on - strand, within AO356_22840 at 5097.129 kb on - strand, within AO356_22840 at 5097.129 kb on - strand, within AO356_22840 at 5097.129 kb on - strand, within AO356_22840 at 5097.196 kb on + strand, within AO356_22840 at 5097.196 kb on + strand, within AO356_22840 at 5097.196 kb on + strand, within AO356_22840 at 5097.196 kb on + strand, within AO356_22840 at 5097.197 kb on - strand, within AO356_22840 at 5097.364 kb on + strand, within AO356_22840 at 5097.364 kb on + strand, within AO356_22840 at 5097.364 kb on + strand, within AO356_22840 at 5097.394 kb on + strand, within AO356_22840 at 5097.394 kb on + strand, within AO356_22840 at 5097.395 kb on - strand, within AO356_22840 at 5097.395 kb on - strand, within AO356_22840 at 5097.395 kb on - strand, within AO356_22840 at 5097.395 kb on - strand, within AO356_22840
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml remove 5,094,621 - AO356_22830 0.55 -1.1 5,094,635 + AO356_22830 0.56 -0.5 5,094,635 + AO356_22830 0.56 +1.0 5,094,635 + AO356_22830 0.56 -0.3 5,094,636 - AO356_22830 0.56 +1.2 5,094,636 - AO356_22830 0.56 +1.0 5,094,670 + AO356_22830 0.58 +1.1 5,094,670 + AO356_22830 0.58 -0.1 5,094,670 + AO356_22830 0.58 -0.0 5,094,671 - AO356_22830 0.58 -0.3 5,094,671 - AO356_22830 0.58 +0.8 5,094,671 - AO356_22830 0.58 +1.0 5,094,671 - AO356_22830 0.58 -0.5 5,094,881 + AO356_22830 0.72 +0.3 5,094,948 - AO356_22830 0.76 +0.2 5,094,998 + AO356_22830 0.79 -1.4 5,094,998 + AO356_22830 0.79 +1.3 5,094,999 - AO356_22830 0.79 -0.0 5,094,999 - AO356_22830 0.79 +0.9 5,094,999 - AO356_22830 0.79 +1.4 5,095,108 + AO356_22830 0.86 +0.4 5,095,108 + AO356_22830 0.86 +0.1 5,095,108 + AO356_22830 0.86 +0.7 5,095,108 + AO356_22830 0.86 -0.0 5,095,109 - AO356_22830 0.86 -0.0 5,095,109 - AO356_22830 0.86 -0.8 5,095,109 - AO356_22830 0.86 +0.7 5,095,109 - AO356_22830 0.86 +1.2 5,095,109 - AO356_22830 0.86 +0.5 5,095,109 - AO356_22830 0.86 +1.2 5,095,217 + -1.3 5,095,275 - +0.5 5,095,335 - -0.3 5,095,372 + +0.8 5,095,372 + -0.3 5,095,372 + +0.6 5,095,372 + +0.5 5,095,372 + -0.7 5,095,372 + -0.4 5,095,372 + +0.3 5,095,372 + +0.7 5,095,372 + +0.8 5,095,372 + +0.7 5,095,372 + +0.9 5,095,373 - +0.8 5,095,373 - +0.2 5,095,373 - -0.1 5,095,373 - +0.3 5,095,373 - -0.4 5,095,373 - +1.0 5,095,373 - -0.2 5,095,373 - -2.1 5,096,462 - -0.6 5,096,462 - +0.2 5,096,462 - -0.7 5,096,462 - -0.1 5,096,497 - +1.8 5,096,604 + +0.2 5,096,604 + +0.7 5,096,604 + -0.9 5,096,604 + +0.5 5,096,605 - -0.6 5,096,707 + -0.6 5,096,707 + +0.6 5,096,708 - +0.0 5,096,947 + AO356_22840 0.30 -1.1 5,096,947 + AO356_22840 0.30 +0.7 5,096,948 - AO356_22840 0.31 -0.5 5,096,948 - AO356_22840 0.31 +1.0 5,096,948 - AO356_22840 0.31 -0.5 5,096,948 - AO356_22840 0.31 -0.3 5,096,948 - AO356_22840 0.31 -0.7 5,096,959 + AO356_22840 0.32 +0.6 5,096,959 + AO356_22840 0.32 +0.4 5,096,960 - AO356_22840 0.32 +0.1 5,096,960 - AO356_22840 0.32 +0.3 5,096,960 - AO356_22840 0.32 +0.6 5,096,960 - AO356_22840 0.32 -1.6 5,096,960 - AO356_22840 0.32 +0.1 5,096,960 - AO356_22840 0.32 -1.0 5,096,960 - AO356_22840 0.32 -0.8 5,096,960 - AO356_22840 0.32 -0.3 5,097,128 + AO356_22840 0.50 +0.6 5,097,128 + AO356_22840 0.50 -0.4 5,097,128 + AO356_22840 0.50 +0.5 5,097,128 + AO356_22840 0.50 -0.1 5,097,128 + AO356_22840 0.50 +0.6 5,097,129 - AO356_22840 0.50 +0.0 5,097,129 - AO356_22840 0.50 +0.4 5,097,129 - AO356_22840 0.50 +1.2 5,097,129 - AO356_22840 0.50 +1.3 5,097,196 + AO356_22840 0.57 -0.2 5,097,196 + AO356_22840 0.57 +1.3 5,097,196 + AO356_22840 0.57 -0.1 5,097,196 + AO356_22840 0.57 -0.2 5,097,197 - AO356_22840 0.57 -0.0 5,097,364 + AO356_22840 0.75 +0.8 5,097,364 + AO356_22840 0.75 -0.0 5,097,364 + AO356_22840 0.75 -0.1 5,097,394 + AO356_22840 0.78 -0.3 5,097,394 + AO356_22840 0.78 +0.2 5,097,395 - AO356_22840 0.78 +1.2 5,097,395 - AO356_22840 0.78 -1.3 5,097,395 - AO356_22840 0.78 -2.6 5,097,395 - AO356_22840 0.78 -1.1
Or see this region's nucleotide sequence