Experiment: Benzalkonium Chloride 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22755 and AO356_22760 are separated by 87 nucleotides AO356_22760 and AO356_22765 overlap by 11 nucleotides AO356_22765 and AO356_22770 are separated by 388 nucleotides AO356_22770 and AO356_22775 are separated by 202 nucleotides
AO356_22755: AO356_22755 - 6-O-methylguanine DNA methyltransferase, at 5,081,642 to 5,082,715
_22755
AO356_22760: AO356_22760 - alpha-ketoglutarate-dependent dioxygenase, at 5,082,803 to 5,083,483
_22760
AO356_22765: AO356_22765 - proline hydroxylase, at 5,083,473 to 5,084,201
_22765
AO356_22770: AO356_22770 - hypothetical protein, at 5,084,590 to 5,084,892
_22770
AO356_22775: AO356_22775 - hypothetical protein, at 5,085,095 to 5,085,445
_22775
Position (kb)
5083
5084
5085 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5082.597 kb on + strand, within AO356_22755 at 5082.597 kb on + strand, within AO356_22755 at 5082.597 kb on + strand, within AO356_22755 at 5082.597 kb on + strand, within AO356_22755 at 5082.598 kb on - strand, within AO356_22755 at 5082.598 kb on - strand, within AO356_22755 at 5082.598 kb on - strand, within AO356_22755 at 5082.622 kb on - strand at 5083.080 kb on + strand, within AO356_22760 at 5083.081 kb on - strand, within AO356_22760 at 5083.279 kb on + strand, within AO356_22760 at 5083.279 kb on + strand, within AO356_22760 at 5083.279 kb on + strand, within AO356_22760 at 5083.279 kb on + strand, within AO356_22760 at 5083.279 kb on + strand, within AO356_22760 at 5083.382 kb on + strand, within AO356_22760 at 5083.383 kb on - strand, within AO356_22760 at 5083.475 kb on - strand at 5083.475 kb on - strand at 5083.475 kb on - strand at 5083.602 kb on + strand, within AO356_22765 at 5083.602 kb on + strand, within AO356_22765 at 5083.602 kb on + strand, within AO356_22765 at 5083.603 kb on - strand, within AO356_22765 at 5083.603 kb on - strand, within AO356_22765 at 5083.753 kb on + strand, within AO356_22765 at 5083.753 kb on + strand, within AO356_22765 at 5083.777 kb on + strand, within AO356_22765 at 5083.792 kb on + strand, within AO356_22765 at 5083.793 kb on - strand, within AO356_22765 at 5083.793 kb on - strand, within AO356_22765 at 5083.931 kb on - strand, within AO356_22765 at 5083.931 kb on - strand, within AO356_22765 at 5083.931 kb on - strand, within AO356_22765 at 5083.981 kb on + strand, within AO356_22765 at 5083.982 kb on - strand, within AO356_22765 at 5083.987 kb on + strand, within AO356_22765 at 5083.988 kb on - strand, within AO356_22765 at 5084.053 kb on + strand, within AO356_22765 at 5084.053 kb on + strand, within AO356_22765 at 5084.054 kb on - strand, within AO356_22765 at 5084.054 kb on - strand, within AO356_22765 at 5084.054 kb on - strand, within AO356_22765 at 5084.055 kb on + strand, within AO356_22765 at 5084.056 kb on - strand, within AO356_22765 at 5084.056 kb on - strand, within AO356_22765 at 5084.056 kb on - strand, within AO356_22765 at 5084.161 kb on - strand at 5084.161 kb on - strand at 5084.161 kb on - strand at 5084.161 kb on - strand at 5084.393 kb on - strand at 5084.402 kb on + strand at 5084.402 kb on + strand at 5084.403 kb on - strand at 5084.530 kb on + strand at 5084.530 kb on + strand at 5084.542 kb on + strand at 5084.542 kb on + strand at 5084.542 kb on + strand at 5084.542 kb on + strand at 5084.543 kb on - strand at 5084.543 kb on - strand at 5084.543 kb on - strand at 5084.543 kb on - strand at 5084.543 kb on - strand at 5084.543 kb on - strand at 5084.759 kb on + strand, within AO356_22770 at 5084.759 kb on + strand, within AO356_22770 at 5084.760 kb on - strand, within AO356_22770 at 5084.760 kb on - strand, within AO356_22770 at 5084.760 kb on - strand, within AO356_22770 at 5084.840 kb on - strand, within AO356_22770 at 5084.974 kb on + strand at 5084.974 kb on + strand at 5084.974 kb on + strand at 5084.974 kb on + strand at 5084.975 kb on - strand at 5084.975 kb on - strand at 5084.975 kb on - strand at 5084.978 kb on - strand at 5085.008 kb on + strand at 5085.080 kb on + strand at 5085.080 kb on + strand at 5085.081 kb on - strand at 5085.094 kb on + strand at 5085.094 kb on + strand at 5085.094 kb on + strand at 5085.094 kb on + strand at 5085.094 kb on + strand at 5085.094 kb on + strand at 5085.094 kb on + strand at 5085.094 kb on + strand at 5085.094 kb on + strand at 5085.094 kb on + strand at 5085.095 kb on - strand at 5085.095 kb on - strand at 5085.095 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml remove 5,082,597 + AO356_22755 0.89 -0.4 5,082,597 + AO356_22755 0.89 +0.0 5,082,597 + AO356_22755 0.89 -0.8 5,082,597 + AO356_22755 0.89 +0.4 5,082,598 - AO356_22755 0.89 +0.9 5,082,598 - AO356_22755 0.89 +0.4 5,082,598 - AO356_22755 0.89 -0.6 5,082,622 - -0.2 5,083,080 + AO356_22760 0.41 +1.2 5,083,081 - AO356_22760 0.41 -0.5 5,083,279 + AO356_22760 0.70 -0.5 5,083,279 + AO356_22760 0.70 +0.5 5,083,279 + AO356_22760 0.70 -2.9 5,083,279 + AO356_22760 0.70 -0.6 5,083,279 + AO356_22760 0.70 -0.0 5,083,382 + AO356_22760 0.85 -0.5 5,083,383 - AO356_22760 0.85 +1.6 5,083,475 - +0.4 5,083,475 - +0.1 5,083,475 - -1.9 5,083,602 + AO356_22765 0.18 +0.6 5,083,602 + AO356_22765 0.18 +0.9 5,083,602 + AO356_22765 0.18 -0.8 5,083,603 - AO356_22765 0.18 -0.4 5,083,603 - AO356_22765 0.18 +0.8 5,083,753 + AO356_22765 0.38 +0.1 5,083,753 + AO356_22765 0.38 +1.1 5,083,777 + AO356_22765 0.42 +0.4 5,083,792 + AO356_22765 0.44 -2.2 5,083,793 - AO356_22765 0.44 +0.2 5,083,793 - AO356_22765 0.44 +0.2 5,083,931 - AO356_22765 0.63 +1.7 5,083,931 - AO356_22765 0.63 -0.4 5,083,931 - AO356_22765 0.63 +1.6 5,083,981 + AO356_22765 0.70 +0.8 5,083,982 - AO356_22765 0.70 +0.3 5,083,987 + AO356_22765 0.71 -0.7 5,083,988 - AO356_22765 0.71 +0.4 5,084,053 + AO356_22765 0.80 -1.0 5,084,053 + AO356_22765 0.80 -1.8 5,084,054 - AO356_22765 0.80 -0.1 5,084,054 - AO356_22765 0.80 -0.6 5,084,054 - AO356_22765 0.80 +0.7 5,084,055 + AO356_22765 0.80 -1.5 5,084,056 - AO356_22765 0.80 +0.8 5,084,056 - AO356_22765 0.80 -1.1 5,084,056 - AO356_22765 0.80 +1.5 5,084,161 - +0.4 5,084,161 - -0.1 5,084,161 - -0.3 5,084,161 - +0.1 5,084,393 - +1.1 5,084,402 + -1.5 5,084,402 + +1.1 5,084,403 - +1.2 5,084,530 + -0.7 5,084,530 + -1.1 5,084,542 + +0.5 5,084,542 + -0.9 5,084,542 + -0.9 5,084,542 + +0.2 5,084,543 - -0.9 5,084,543 - +1.3 5,084,543 - +0.1 5,084,543 - -0.0 5,084,543 - +0.8 5,084,543 - -2.0 5,084,759 + AO356_22770 0.56 +1.6 5,084,759 + AO356_22770 0.56 -1.6 5,084,760 - AO356_22770 0.56 +0.6 5,084,760 - AO356_22770 0.56 +0.6 5,084,760 - AO356_22770 0.56 +0.0 5,084,840 - AO356_22770 0.83 +1.3 5,084,974 + +0.5 5,084,974 + -0.2 5,084,974 + -0.4 5,084,974 + -2.6 5,084,975 - +0.4 5,084,975 - -0.1 5,084,975 - +1.6 5,084,978 - +1.5 5,085,008 + -2.4 5,085,080 + -0.9 5,085,080 + -2.0 5,085,081 - +1.4 5,085,094 + +1.9 5,085,094 + +0.7 5,085,094 + +1.6 5,085,094 + +0.5 5,085,094 + +1.5 5,085,094 + +1.7 5,085,094 + +1.7 5,085,094 + +1.4 5,085,094 + +0.4 5,085,094 + +1.9 5,085,095 - +1.5 5,085,095 - +1.1 5,085,095 - +1.5
Or see this region's nucleotide sequence