Experiment: Benzalkonium Chloride 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_19515 and AO356_19520 are separated by 130 nucleotides AO356_19520 and AO356_19525 are separated by 254 nucleotides AO356_19525 and AO356_19530 are separated by 139 nucleotides
AO356_19515: AO356_19515 - hypothetical protein, at 4,378,617 to 4,378,937
_19515
AO356_19520: AO356_19520 - isochorismatase, at 4,379,068 to 4,379,658
_19520
AO356_19525: AO356_19525 - protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific, at 4,379,913 to 4,380,821
_19525
AO356_19530: AO356_19530 - hypothetical protein, at 4,380,961 to 4,381,749
_19530
Position (kb)
4379
4380
4381 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 4378.979 kb on + strand at 4378.979 kb on + strand at 4379.168 kb on + strand, within AO356_19520 at 4379.168 kb on + strand, within AO356_19520 at 4379.168 kb on + strand, within AO356_19520 at 4379.168 kb on + strand, within AO356_19520 at 4379.169 kb on - strand, within AO356_19520 at 4379.169 kb on - strand, within AO356_19520 at 4379.169 kb on - strand, within AO356_19520 at 4379.559 kb on - strand, within AO356_19520 at 4379.616 kb on - strand at 4379.753 kb on + strand at 4379.753 kb on + strand at 4379.785 kb on + strand at 4379.785 kb on + strand at 4379.785 kb on + strand at 4379.785 kb on + strand at 4379.785 kb on + strand at 4379.786 kb on - strand at 4379.786 kb on - strand at 4379.786 kb on - strand at 4379.786 kb on - strand at 4379.786 kb on - strand at 4379.786 kb on - strand at 4379.786 kb on - strand at 4379.786 kb on - strand at 4379.806 kb on - strand at 4379.878 kb on - strand at 4379.948 kb on + strand at 4379.948 kb on + strand at 4380.074 kb on + strand, within AO356_19525 at 4380.074 kb on + strand, within AO356_19525 at 4380.074 kb on + strand, within AO356_19525 at 4380.078 kb on + strand, within AO356_19525 at 4380.078 kb on + strand, within AO356_19525 at 4380.078 kb on + strand, within AO356_19525 at 4380.079 kb on - strand, within AO356_19525 at 4380.165 kb on + strand, within AO356_19525 at 4380.165 kb on + strand, within AO356_19525 at 4380.165 kb on + strand, within AO356_19525 at 4380.830 kb on - strand at 4380.830 kb on - strand at 4380.842 kb on - strand at 4380.942 kb on + strand at 4380.942 kb on + strand at 4380.942 kb on + strand at 4380.943 kb on - strand at 4380.953 kb on + strand at 4381.352 kb on + strand, within AO356_19530 at 4381.380 kb on + strand, within AO356_19530 at 4381.577 kb on + strand, within AO356_19530 at 4381.577 kb on + strand, within AO356_19530 at 4381.577 kb on + strand, within AO356_19530 at 4381.577 kb on + strand, within AO356_19530 at 4381.577 kb on + strand, within AO356_19530 at 4381.577 kb on + strand, within AO356_19530 at 4381.577 kb on + strand, within AO356_19530 at 4381.578 kb on - strand, within AO356_19530 at 4381.578 kb on - strand, within AO356_19530 at 4381.578 kb on - strand, within AO356_19530 at 4381.578 kb on - strand, within AO356_19530 at 4381.578 kb on - strand, within AO356_19530 at 4381.578 kb on - strand, within AO356_19530 at 4381.578 kb on - strand, within AO356_19530 at 4381.749 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml remove 4,378,979 + -1.0 4,378,979 + -0.2 4,379,168 + AO356_19520 0.17 +1.4 4,379,168 + AO356_19520 0.17 +1.9 4,379,168 + AO356_19520 0.17 +1.6 4,379,168 + AO356_19520 0.17 +1.4 4,379,169 - AO356_19520 0.17 +3.8 4,379,169 - AO356_19520 0.17 +4.9 4,379,169 - AO356_19520 0.17 +2.4 4,379,559 - AO356_19520 0.83 +1.9 4,379,616 - +2.0 4,379,753 + +1.3 4,379,753 + +0.5 4,379,785 + +1.2 4,379,785 + +0.8 4,379,785 + +0.6 4,379,785 + +1.3 4,379,785 + +1.9 4,379,786 - -0.1 4,379,786 - -0.7 4,379,786 - -0.5 4,379,786 - -1.1 4,379,786 - +0.3 4,379,786 - +0.2 4,379,786 - -0.2 4,379,786 - +0.0 4,379,806 - -0.1 4,379,878 - -0.5 4,379,948 + +0.7 4,379,948 + +1.3 4,380,074 + AO356_19525 0.18 +0.9 4,380,074 + AO356_19525 0.18 +0.2 4,380,074 + AO356_19525 0.18 -1.5 4,380,078 + AO356_19525 0.18 -0.3 4,380,078 + AO356_19525 0.18 +0.2 4,380,078 + AO356_19525 0.18 +0.7 4,380,079 - AO356_19525 0.18 +0.6 4,380,165 + AO356_19525 0.28 +0.5 4,380,165 + AO356_19525 0.28 -0.4 4,380,165 + AO356_19525 0.28 +0.1 4,380,830 - -0.7 4,380,830 - +0.5 4,380,842 - +1.8 4,380,942 + +1.1 4,380,942 + -0.8 4,380,942 + +1.5 4,380,943 - -1.9 4,380,953 + -0.8 4,381,352 + AO356_19530 0.50 +0.9 4,381,380 + AO356_19530 0.53 +0.8 4,381,577 + AO356_19530 0.78 +1.0 4,381,577 + AO356_19530 0.78 -0.4 4,381,577 + AO356_19530 0.78 -0.9 4,381,577 + AO356_19530 0.78 +0.7 4,381,577 + AO356_19530 0.78 +0.1 4,381,577 + AO356_19530 0.78 -0.1 4,381,577 + AO356_19530 0.78 +0.6 4,381,578 - AO356_19530 0.78 -0.1 4,381,578 - AO356_19530 0.78 +0.0 4,381,578 - AO356_19530 0.78 -1.1 4,381,578 - AO356_19530 0.78 -0.1 4,381,578 - AO356_19530 0.78 +0.6 4,381,578 - AO356_19530 0.78 -0.9 4,381,578 - AO356_19530 0.78 +0.8 4,381,749 + +0.8
Or see this region's nucleotide sequence