Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18450

Experiment: Benzalkonium Chloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18445 and AO356_18450 are separated by 155 nucleotidesAO356_18450 and AO356_18455 are separated by 2 nucleotides AO356_18445: AO356_18445 - RND transporter, at 4,152,332 to 4,153,480 _18445 AO356_18450: AO356_18450 - outer membrane component of uptake system, probably for ferrous iron (from data), at 4,153,636 to 4,154,733 _18450 AO356_18455: AO356_18455 - imelysin, at 4,154,736 to 4,155,800 _18455 Position (kb) 4153 4154 4155Strain fitness (log2 ratio) -1 0 1 2 3at 4152.867 kb on + strand, within AO356_18445at 4152.867 kb on + strand, within AO356_18445at 4152.867 kb on + strand, within AO356_18445at 4152.867 kb on + strand, within AO356_18445at 4152.868 kb on - strand, within AO356_18445at 4152.868 kb on - strand, within AO356_18445at 4152.868 kb on - strand, within AO356_18445at 4152.868 kb on - strand, within AO356_18445at 4152.880 kb on - strand, within AO356_18445at 4152.880 kb on - strand, within AO356_18445at 4153.414 kb on - strandat 4153.433 kb on + strandat 4153.433 kb on + strandat 4153.514 kb on + strandat 4153.514 kb on + strandat 4153.515 kb on - strandat 4153.515 kb on - strandat 4153.520 kb on + strandat 4153.521 kb on - strandat 4153.521 kb on - strandat 4153.521 kb on - strandat 4153.521 kb on - strandat 4153.533 kb on + strandat 4153.533 kb on + strandat 4153.534 kb on - strandat 4153.551 kb on + strandat 4153.718 kb on + strandat 4153.718 kb on + strandat 4153.721 kb on + strandat 4153.721 kb on + strandat 4153.722 kb on - strandat 4153.910 kb on + strand, within AO356_18450at 4153.910 kb on + strand, within AO356_18450at 4153.910 kb on + strand, within AO356_18450at 4154.269 kb on + strand, within AO356_18450at 4154.269 kb on + strand, within AO356_18450at 4154.270 kb on - strand, within AO356_18450at 4154.270 kb on - strand, within AO356_18450at 4154.270 kb on - strand, within AO356_18450at 4154.270 kb on - strand, within AO356_18450at 4154.270 kb on - strand, within AO356_18450at 4154.309 kb on + strand, within AO356_18450at 4154.360 kb on + strand, within AO356_18450at 4154.360 kb on + strand, within AO356_18450at 4154.360 kb on + strand, within AO356_18450at 4154.360 kb on + strand, within AO356_18450at 4154.361 kb on - strand, within AO356_18450at 4154.399 kb on + strand, within AO356_18450at 4154.399 kb on + strand, within AO356_18450at 4154.400 kb on - strand, within AO356_18450at 4154.465 kb on + strand, within AO356_18450at 4154.465 kb on + strand, within AO356_18450at 4154.465 kb on + strand, within AO356_18450at 4154.465 kb on + strand, within AO356_18450at 4154.466 kb on - strand, within AO356_18450at 4154.597 kb on + strand, within AO356_18450at 4154.598 kb on - strand, within AO356_18450at 4154.830 kb on + strandat 4154.830 kb on + strandat 4154.831 kb on - strandat 4154.923 kb on + strand, within AO356_18455at 4155.090 kb on + strand, within AO356_18455at 4155.090 kb on + strand, within AO356_18455at 4155.090 kb on + strand, within AO356_18455at 4155.091 kb on - strand, within AO356_18455at 4155.319 kb on + strand, within AO356_18455at 4155.320 kb on - strand, within AO356_18455at 4155.320 kb on - strand, within AO356_18455at 4155.320 kb on - strand, within AO356_18455at 4155.373 kb on + strand, within AO356_18455at 4155.373 kb on + strand, within AO356_18455at 4155.373 kb on + strand, within AO356_18455at 4155.373 kb on + strand, within AO356_18455at 4155.373 kb on + strand, within AO356_18455at 4155.373 kb on + strand, within AO356_18455at 4155.374 kb on - strand, within AO356_18455at 4155.396 kb on + strand, within AO356_18455at 4155.679 kb on + strand, within AO356_18455at 4155.679 kb on + strand, within AO356_18455at 4155.680 kb on - strand, within AO356_18455at 4155.680 kb on - strand, within AO356_18455

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml
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4,152,867 + AO356_18445 0.47 -0.7
4,152,867 + AO356_18445 0.47 -1.7
4,152,867 + AO356_18445 0.47 -0.3
4,152,867 + AO356_18445 0.47 -1.1
4,152,868 - AO356_18445 0.47 -1.4
4,152,868 - AO356_18445 0.47 +0.1
4,152,868 - AO356_18445 0.47 -1.7
4,152,868 - AO356_18445 0.47 -0.4
4,152,880 - AO356_18445 0.48 +1.5
4,152,880 - AO356_18445 0.48 -1.0
4,153,414 - -1.7
4,153,433 + -1.1
4,153,433 + -0.9
4,153,514 + -0.1
4,153,514 + -0.4
4,153,515 - +0.2
4,153,515 - +1.5
4,153,520 + +0.6
4,153,521 - +0.8
4,153,521 - +0.4
4,153,521 - +2.8
4,153,521 - -1.1
4,153,533 + -1.4
4,153,533 + -0.4
4,153,534 - +1.2
4,153,551 + -1.1
4,153,718 + +0.3
4,153,718 + +1.0
4,153,721 + +0.3
4,153,721 + +0.6
4,153,722 - +1.7
4,153,910 + AO356_18450 0.25 +1.1
4,153,910 + AO356_18450 0.25 +0.9
4,153,910 + AO356_18450 0.25 -0.7
4,154,269 + AO356_18450 0.58 +0.3
4,154,269 + AO356_18450 0.58 -0.9
4,154,270 - AO356_18450 0.58 +0.9
4,154,270 - AO356_18450 0.58 +0.8
4,154,270 - AO356_18450 0.58 +0.2
4,154,270 - AO356_18450 0.58 -0.8
4,154,270 - AO356_18450 0.58 -0.5
4,154,309 + AO356_18450 0.61 +0.6
4,154,360 + AO356_18450 0.66 -0.8
4,154,360 + AO356_18450 0.66 +0.4
4,154,360 + AO356_18450 0.66 -0.2
4,154,360 + AO356_18450 0.66 +0.1
4,154,361 - AO356_18450 0.66 +0.1
4,154,399 + AO356_18450 0.69 +1.3
4,154,399 + AO356_18450 0.69 +1.1
4,154,400 - AO356_18450 0.70 -0.1
4,154,465 + AO356_18450 0.76 -0.8
4,154,465 + AO356_18450 0.76 +0.3
4,154,465 + AO356_18450 0.76 +0.5
4,154,465 + AO356_18450 0.76 +1.8
4,154,466 - AO356_18450 0.76 -0.4
4,154,597 + AO356_18450 0.88 -1.0
4,154,598 - AO356_18450 0.88 -0.4
4,154,830 + -0.6
4,154,830 + -1.3
4,154,831 - -0.8
4,154,923 + AO356_18455 0.18 -1.2
4,155,090 + AO356_18455 0.33 +0.0
4,155,090 + AO356_18455 0.33 +0.1
4,155,090 + AO356_18455 0.33 -0.1
4,155,091 - AO356_18455 0.33 +0.0
4,155,319 + AO356_18455 0.55 -0.2
4,155,320 - AO356_18455 0.55 +1.2
4,155,320 - AO356_18455 0.55 -1.1
4,155,320 - AO356_18455 0.55 +0.7
4,155,373 + AO356_18455 0.60 +1.9
4,155,373 + AO356_18455 0.60 -1.1
4,155,373 + AO356_18455 0.60 +2.0
4,155,373 + AO356_18455 0.60 +0.6
4,155,373 + AO356_18455 0.60 +1.0
4,155,373 + AO356_18455 0.60 +0.6
4,155,374 - AO356_18455 0.60 +0.3
4,155,396 + AO356_18455 0.62 -0.4
4,155,679 + AO356_18455 0.89 +1.3
4,155,679 + AO356_18455 0.89 +2.1
4,155,680 - AO356_18455 0.89 -0.4
4,155,680 - AO356_18455 0.89 -1.2

Or see this region's nucleotide sequence