Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16050

Experiment: Benzalkonium Chloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16045 and AO356_16050 are separated by 200 nucleotidesAO356_16050 and AO356_16055 are separated by 327 nucleotides AO356_16045: AO356_16045 - acetyl-CoA synthetase, at 3,627,147 to 3,629,084 _16045 AO356_16050: AO356_16050 - glucose-6-phosphate isomerase, at 3,629,285 to 3,630,949 _16050 AO356_16055: AO356_16055 - pantoate--beta-alanine ligase, at 3,631,277 to 3,632,137 _16055 Position (kb) 3629 3630 3631Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3628.306 kb on + strand, within AO356_16045at 3628.306 kb on + strand, within AO356_16045at 3628.306 kb on + strand, within AO356_16045at 3628.306 kb on + strand, within AO356_16045at 3628.306 kb on + strand, within AO356_16045at 3628.306 kb on + strand, within AO356_16045at 3628.306 kb on + strand, within AO356_16045at 3628.307 kb on - strand, within AO356_16045at 3628.307 kb on - strand, within AO356_16045at 3628.307 kb on - strand, within AO356_16045at 3628.307 kb on - strand, within AO356_16045at 3628.307 kb on - strand, within AO356_16045at 3628.307 kb on - strand, within AO356_16045at 3628.307 kb on - strand, within AO356_16045at 3628.384 kb on + strand, within AO356_16045at 3628.385 kb on - strand, within AO356_16045at 3628.648 kb on + strand, within AO356_16045at 3628.675 kb on + strand, within AO356_16045at 3628.675 kb on + strand, within AO356_16045at 3628.675 kb on + strand, within AO356_16045at 3628.675 kb on + strand, within AO356_16045at 3628.675 kb on + strand, within AO356_16045at 3628.675 kb on + strand, within AO356_16045at 3628.676 kb on - strand, within AO356_16045at 3628.676 kb on - strand, within AO356_16045at 3628.760 kb on - strand, within AO356_16045at 3628.909 kb on + strandat 3628.909 kb on + strandat 3629.002 kb on + strandat 3629.002 kb on + strandat 3629.002 kb on + strandat 3629.003 kb on - strandat 3629.003 kb on - strandat 3629.003 kb on - strandat 3629.014 kb on + strandat 3629.014 kb on + strandat 3629.014 kb on + strandat 3629.015 kb on - strandat 3629.015 kb on - strandat 3629.095 kb on + strandat 3629.095 kb on + strandat 3629.095 kb on + strandat 3629.095 kb on + strandat 3629.096 kb on - strandat 3629.096 kb on - strandat 3629.119 kb on + strandat 3629.120 kb on - strandat 3629.135 kb on - strandat 3629.264 kb on + strandat 3629.264 kb on + strandat 3629.264 kb on + strandat 3629.264 kb on + strandat 3629.264 kb on + strandat 3629.264 kb on + strandat 3629.264 kb on + strandat 3629.280 kb on + strandat 3629.281 kb on - strandat 3629.311 kb on - strandat 3629.311 kb on - strandat 3629.376 kb on + strandat 3629.472 kb on + strand, within AO356_16050at 3629.676 kb on + strand, within AO356_16050at 3629.776 kb on - strand, within AO356_16050at 3629.776 kb on - strand, within AO356_16050at 3629.916 kb on + strand, within AO356_16050at 3629.926 kb on - strand, within AO356_16050at 3629.967 kb on + strand, within AO356_16050at 3630.045 kb on + strand, within AO356_16050at 3630.578 kb on - strand, within AO356_16050at 3630.943 kb on - strandat 3630.968 kb on + strandat 3630.987 kb on - strandat 3630.987 kb on - strandat 3631.062 kb on + strandat 3631.062 kb on + strandat 3631.062 kb on + strandat 3631.063 kb on - strandat 3631.067 kb on + strandat 3631.067 kb on + strandat 3631.067 kb on + strandat 3631.067 kb on + strandat 3631.068 kb on - strandat 3631.068 kb on - strandat 3631.068 kb on - strandat 3631.068 kb on - strandat 3631.068 kb on - strandat 3631.068 kb on - strandat 3631.125 kb on + strandat 3631.125 kb on + strandat 3631.126 kb on - strandat 3631.126 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml
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3,628,306 + AO356_16045 0.60 +1.0
3,628,306 + AO356_16045 0.60 -0.7
3,628,306 + AO356_16045 0.60 -0.3
3,628,306 + AO356_16045 0.60 -1.1
3,628,306 + AO356_16045 0.60 -0.5
3,628,306 + AO356_16045 0.60 +0.8
3,628,306 + AO356_16045 0.60 -0.4
3,628,307 - AO356_16045 0.60 -0.1
3,628,307 - AO356_16045 0.60 +0.4
3,628,307 - AO356_16045 0.60 +0.4
3,628,307 - AO356_16045 0.60 +0.6
3,628,307 - AO356_16045 0.60 -0.2
3,628,307 - AO356_16045 0.60 -0.3
3,628,307 - AO356_16045 0.60 +0.8
3,628,384 + AO356_16045 0.64 +0.7
3,628,385 - AO356_16045 0.64 +0.4
3,628,648 + AO356_16045 0.77 -1.0
3,628,675 + AO356_16045 0.79 -2.2
3,628,675 + AO356_16045 0.79 -1.1
3,628,675 + AO356_16045 0.79 +1.0
3,628,675 + AO356_16045 0.79 +1.0
3,628,675 + AO356_16045 0.79 +0.4
3,628,675 + AO356_16045 0.79 +0.9
3,628,676 - AO356_16045 0.79 -0.2
3,628,676 - AO356_16045 0.79 +0.9
3,628,760 - AO356_16045 0.83 -0.3
3,628,909 + +1.2
3,628,909 + +0.5
3,629,002 + -0.2
3,629,002 + +0.8
3,629,002 + -0.0
3,629,003 - -0.2
3,629,003 - -0.2
3,629,003 - +1.0
3,629,014 + -0.8
3,629,014 + -1.0
3,629,014 + +0.4
3,629,015 - -0.2
3,629,015 - -0.5
3,629,095 + -0.8
3,629,095 + +1.3
3,629,095 + -0.3
3,629,095 + +0.7
3,629,096 - +0.1
3,629,096 - -0.3
3,629,119 + -1.1
3,629,120 - -0.6
3,629,135 - +0.2
3,629,264 + -0.2
3,629,264 + +0.1
3,629,264 + -0.8
3,629,264 + +1.4
3,629,264 + -0.4
3,629,264 + -1.3
3,629,264 + +0.1
3,629,280 + -1.2
3,629,281 - -0.0
3,629,311 - +2.8
3,629,311 - +2.3
3,629,376 + +0.2
3,629,472 + AO356_16050 0.11 +2.8
3,629,676 + AO356_16050 0.23 +3.3
3,629,776 - AO356_16050 0.29 -1.3
3,629,776 - AO356_16050 0.29 +2.0
3,629,916 + AO356_16050 0.38 +2.8
3,629,926 - AO356_16050 0.38 +0.7
3,629,967 + AO356_16050 0.41 +3.7
3,630,045 + AO356_16050 0.46 +1.5
3,630,578 - AO356_16050 0.78 -1.5
3,630,943 - +2.3
3,630,968 + -0.8
3,630,987 - -0.5
3,630,987 - +1.2
3,631,062 + +0.2
3,631,062 + +0.7
3,631,062 + +0.2
3,631,063 - -0.6
3,631,067 + +1.0
3,631,067 + +2.0
3,631,067 + +2.2
3,631,067 + +0.7
3,631,068 - -0.4
3,631,068 - +1.2
3,631,068 - +1.0
3,631,068 - +1.1
3,631,068 - +1.7
3,631,068 - -0.3
3,631,125 + +0.5
3,631,125 + +0.1
3,631,126 - +0.3
3,631,126 - +0.1

Or see this region's nucleotide sequence