Experiment: Benzalkonium Chloride 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_13930 and AO356_13935 are separated by 162 nucleotides
AO356_13930: AO356_13930 - choline dehydrogenase, at 3,159,873 to 3,163,325
_13930
AO356_13935: AO356_13935 - hypothetical protein, at 3,163,488 to 3,165,356
_13935
Position (kb)
3159
3160
3161
3162
3163
3164 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3159.032 kb on + strand at 3159.087 kb on + strand at 3159.087 kb on + strand at 3159.174 kb on + strand at 3159.270 kb on - strand at 3159.311 kb on + strand at 3159.348 kb on - strand at 3159.348 kb on - strand at 3159.365 kb on + strand at 3159.412 kb on - strand at 3159.412 kb on - strand at 3159.519 kb on - strand at 3159.526 kb on + strand at 3159.527 kb on - strand at 3159.527 kb on - strand at 3159.527 kb on - strand at 3159.697 kb on - strand at 3159.697 kb on - strand at 3159.737 kb on + strand at 3159.737 kb on + strand at 3159.737 kb on + strand at 3159.737 kb on + strand at 3159.737 kb on + strand at 3159.738 kb on - strand at 3159.738 kb on - strand at 3159.738 kb on - strand at 3159.739 kb on + strand at 3159.739 kb on + strand at 3159.739 kb on + strand at 3159.740 kb on - strand at 3159.740 kb on - strand at 3159.740 kb on - strand at 3159.740 kb on - strand at 3159.761 kb on + strand at 3159.761 kb on + strand at 3159.761 kb on + strand at 3159.761 kb on + strand at 3159.762 kb on - strand at 3159.762 kb on - strand at 3159.762 kb on - strand at 3159.902 kb on + strand at 3159.915 kb on + strand at 3159.916 kb on - strand at 3159.916 kb on - strand at 3160.032 kb on + strand at 3160.092 kb on - strand at 3160.282 kb on - strand, within AO356_13930 at 3160.374 kb on + strand, within AO356_13930 at 3160.375 kb on - strand, within AO356_13930 at 3160.375 kb on - strand, within AO356_13930 at 3160.398 kb on + strand, within AO356_13930 at 3160.398 kb on + strand, within AO356_13930 at 3160.399 kb on - strand, within AO356_13930 at 3160.506 kb on - strand, within AO356_13930 at 3160.506 kb on - strand, within AO356_13930 at 3160.539 kb on + strand, within AO356_13930 at 3160.540 kb on - strand, within AO356_13930 at 3160.540 kb on - strand, within AO356_13930 at 3160.540 kb on - strand, within AO356_13930 at 3160.638 kb on + strand, within AO356_13930 at 3161.070 kb on + strand, within AO356_13930 at 3161.070 kb on + strand, within AO356_13930 at 3161.071 kb on - strand, within AO356_13930 at 3161.110 kb on - strand, within AO356_13930 at 3161.110 kb on - strand, within AO356_13930 at 3161.110 kb on - strand, within AO356_13930 at 3161.113 kb on - strand, within AO356_13930 at 3161.139 kb on + strand, within AO356_13930 at 3161.140 kb on - strand, within AO356_13930 at 3161.454 kb on + strand, within AO356_13930 at 3161.454 kb on + strand, within AO356_13930 at 3161.455 kb on - strand, within AO356_13930 at 3161.455 kb on - strand, within AO356_13930 at 3161.652 kb on + strand, within AO356_13930 at 3161.653 kb on - strand, within AO356_13930 at 3161.653 kb on - strand, within AO356_13930 at 3161.895 kb on + strand, within AO356_13930 at 3161.929 kb on - strand, within AO356_13930 at 3161.964 kb on + strand, within AO356_13930 at 3161.967 kb on + strand, within AO356_13930 at 3161.967 kb on + strand, within AO356_13930 at 3161.967 kb on + strand, within AO356_13930 at 3161.967 kb on + strand, within AO356_13930 at 3161.968 kb on - strand, within AO356_13930 at 3161.968 kb on - strand, within AO356_13930 at 3161.968 kb on - strand, within AO356_13930 at 3161.968 kb on - strand, within AO356_13930 at 3162.015 kb on - strand, within AO356_13930 at 3162.015 kb on - strand, within AO356_13930 at 3162.015 kb on - strand, within AO356_13930 at 3162.039 kb on + strand, within AO356_13930 at 3162.039 kb on + strand, within AO356_13930 at 3162.039 kb on + strand, within AO356_13930 at 3162.040 kb on - strand, within AO356_13930 at 3162.040 kb on - strand, within AO356_13930 at 3162.040 kb on - strand, within AO356_13930 at 3162.040 kb on - strand, within AO356_13930 at 3162.137 kb on + strand, within AO356_13930 at 3162.137 kb on + strand, within AO356_13930 at 3162.137 kb on + strand, within AO356_13930 at 3162.138 kb on - strand, within AO356_13930 at 3162.228 kb on + strand, within AO356_13930 at 3162.256 kb on - strand, within AO356_13930 at 3162.256 kb on - strand, within AO356_13930 at 3162.256 kb on - strand, within AO356_13930 at 3162.256 kb on - strand, within AO356_13930 at 3162.256 kb on - strand, within AO356_13930 at 3162.256 kb on - strand, within AO356_13930 at 3162.462 kb on + strand, within AO356_13930 at 3162.462 kb on + strand, within AO356_13930 at 3162.480 kb on + strand, within AO356_13930 at 3162.480 kb on + strand, within AO356_13930 at 3162.480 kb on + strand, within AO356_13930 at 3162.480 kb on + strand, within AO356_13930 at 3162.480 kb on + strand, within AO356_13930 at 3162.481 kb on - strand, within AO356_13930 at 3162.481 kb on - strand, within AO356_13930 at 3162.512 kb on + strand, within AO356_13930 at 3162.512 kb on + strand, within AO356_13930 at 3162.512 kb on + strand, within AO356_13930 at 3162.512 kb on + strand, within AO356_13930 at 3162.564 kb on + strand, within AO356_13930 at 3162.564 kb on + strand, within AO356_13930 at 3162.564 kb on + strand, within AO356_13930 at 3162.564 kb on + strand, within AO356_13930 at 3162.565 kb on - strand, within AO356_13930 at 3162.847 kb on - strand, within AO356_13930 at 3162.847 kb on - strand, within AO356_13930 at 3162.868 kb on - strand, within AO356_13930 at 3162.891 kb on + strand, within AO356_13930 at 3162.892 kb on - strand, within AO356_13930 at 3162.930 kb on + strand, within AO356_13930 at 3162.930 kb on + strand, within AO356_13930 at 3162.930 kb on + strand, within AO356_13930 at 3162.930 kb on + strand, within AO356_13930 at 3162.930 kb on + strand, within AO356_13930 at 3162.930 kb on + strand, within AO356_13930 at 3162.930 kb on + strand, within AO356_13930 at 3162.930 kb on + strand, within AO356_13930 at 3162.930 kb on + strand, within AO356_13930 at 3162.930 kb on + strand, within AO356_13930 at 3162.931 kb on - strand, within AO356_13930 at 3162.931 kb on - strand, within AO356_13930 at 3162.931 kb on - strand, within AO356_13930 at 3162.931 kb on - strand, within AO356_13930 at 3162.931 kb on - strand, within AO356_13930 at 3162.931 kb on - strand, within AO356_13930 at 3162.931 kb on - strand, within AO356_13930 at 3162.931 kb on - strand, within AO356_13930 at 3162.931 kb on - strand, within AO356_13930 at 3162.931 kb on - strand, within AO356_13930 at 3162.931 kb on - strand, within AO356_13930 at 3162.931 kb on - strand, within AO356_13930 at 3162.942 kb on + strand, within AO356_13930 at 3163.080 kb on + strand at 3163.080 kb on + strand at 3163.080 kb on + strand at 3163.080 kb on + strand at 3163.080 kb on + strand at 3163.080 kb on + strand at 3163.081 kb on - strand at 3163.081 kb on - strand at 3163.081 kb on - strand at 3163.146 kb on + strand at 3163.146 kb on + strand at 3163.147 kb on - strand at 3163.147 kb on - strand at 3163.147 kb on - strand at 3163.147 kb on - strand at 3163.147 kb on - strand at 3163.147 kb on - strand at 3163.173 kb on + strand at 3163.173 kb on + strand at 3163.173 kb on + strand at 3163.233 kb on + strand at 3163.281 kb on + strand at 3163.281 kb on + strand at 3163.281 kb on + strand at 3163.457 kb on - strand at 3163.472 kb on + strand at 3163.497 kb on + strand at 3163.497 kb on + strand at 3163.497 kb on + strand at 3163.498 kb on - strand at 3163.498 kb on - strand at 3163.498 kb on - strand at 3163.498 kb on - strand at 3163.671 kb on + strand at 3163.671 kb on + strand at 3163.672 kb on - strand at 3163.778 kb on + strand, within AO356_13935 at 3163.851 kb on + strand, within AO356_13935 at 3164.010 kb on + strand, within AO356_13935 at 3164.010 kb on + strand, within AO356_13935 at 3164.011 kb on - strand, within AO356_13935 at 3164.030 kb on - strand, within AO356_13935 at 3164.030 kb on - strand, within AO356_13935 at 3164.065 kb on - strand, within AO356_13935 at 3164.070 kb on + strand, within AO356_13935 at 3164.070 kb on + strand, within AO356_13935 at 3164.070 kb on + strand, within AO356_13935 at 3164.071 kb on - strand, within AO356_13935 at 3164.110 kb on - strand, within AO356_13935 at 3164.112 kb on + strand, within AO356_13935 at 3164.112 kb on + strand, within AO356_13935 at 3164.112 kb on + strand, within AO356_13935 at 3164.112 kb on + strand, within AO356_13935 at 3164.113 kb on - strand, within AO356_13935 at 3164.191 kb on - strand, within AO356_13935
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml remove 3,159,032 + +0.3 3,159,087 + +0.0 3,159,087 + -0.5 3,159,174 + -0.3 3,159,270 - +0.2 3,159,311 + +0.6 3,159,348 - -2.7 3,159,348 - -1.2 3,159,365 + -1.2 3,159,412 - -0.5 3,159,412 - -0.0 3,159,519 - -0.7 3,159,526 + +1.2 3,159,527 - +0.3 3,159,527 - +0.8 3,159,527 - -0.1 3,159,697 - -2.4 3,159,697 - +0.8 3,159,737 + +1.2 3,159,737 + +1.2 3,159,737 + -0.0 3,159,737 + +0.2 3,159,737 + +2.9 3,159,738 - -0.1 3,159,738 - +0.5 3,159,738 - -0.9 3,159,739 + +1.1 3,159,739 + -1.1 3,159,739 + -0.5 3,159,740 - +0.1 3,159,740 - +0.6 3,159,740 - +0.2 3,159,740 - -1.5 3,159,761 + +0.5 3,159,761 + +1.2 3,159,761 + +0.0 3,159,761 + +0.6 3,159,762 - +0.4 3,159,762 - +0.6 3,159,762 - +0.8 3,159,902 + -0.5 3,159,915 + -0.5 3,159,916 - +1.1 3,159,916 - +0.4 3,160,032 + +0.5 3,160,092 - +1.1 3,160,282 - AO356_13930 0.12 +0.2 3,160,374 + AO356_13930 0.15 +1.1 3,160,375 - AO356_13930 0.15 +0.5 3,160,375 - AO356_13930 0.15 +0.6 3,160,398 + AO356_13930 0.15 -1.1 3,160,398 + AO356_13930 0.15 +0.1 3,160,399 - AO356_13930 0.15 -0.0 3,160,506 - AO356_13930 0.18 +0.1 3,160,506 - AO356_13930 0.18 +1.6 3,160,539 + AO356_13930 0.19 +0.5 3,160,540 - AO356_13930 0.19 +0.5 3,160,540 - AO356_13930 0.19 +0.2 3,160,540 - AO356_13930 0.19 +0.4 3,160,638 + AO356_13930 0.22 -0.3 3,161,070 + AO356_13930 0.35 +0.8 3,161,070 + AO356_13930 0.35 +0.1 3,161,071 - AO356_13930 0.35 +0.4 3,161,110 - AO356_13930 0.36 +0.1 3,161,110 - AO356_13930 0.36 -2.5 3,161,110 - AO356_13930 0.36 -0.4 3,161,113 - AO356_13930 0.36 -0.5 3,161,139 + AO356_13930 0.37 +0.3 3,161,140 - AO356_13930 0.37 -1.1 3,161,454 + AO356_13930 0.46 -0.8 3,161,454 + AO356_13930 0.46 +0.8 3,161,455 - AO356_13930 0.46 -0.5 3,161,455 - AO356_13930 0.46 +1.2 3,161,652 + AO356_13930 0.52 +1.1 3,161,653 - AO356_13930 0.52 +0.0 3,161,653 - AO356_13930 0.52 -0.2 3,161,895 + AO356_13930 0.59 -1.2 3,161,929 - AO356_13930 0.60 +0.2 3,161,964 + AO356_13930 0.61 +0.2 3,161,967 + AO356_13930 0.61 +1.3 3,161,967 + AO356_13930 0.61 -0.6 3,161,967 + AO356_13930 0.61 +0.1 3,161,967 + AO356_13930 0.61 -1.3 3,161,968 - AO356_13930 0.61 -1.7 3,161,968 - AO356_13930 0.61 -1.1 3,161,968 - AO356_13930 0.61 -0.7 3,161,968 - AO356_13930 0.61 +1.1 3,162,015 - AO356_13930 0.62 +0.4 3,162,015 - AO356_13930 0.62 +0.7 3,162,015 - AO356_13930 0.62 -0.2 3,162,039 + AO356_13930 0.63 +0.5 3,162,039 + AO356_13930 0.63 -0.6 3,162,039 + AO356_13930 0.63 -1.5 3,162,040 - AO356_13930 0.63 +1.0 3,162,040 - AO356_13930 0.63 +0.2 3,162,040 - AO356_13930 0.63 +0.2 3,162,040 - AO356_13930 0.63 +0.3 3,162,137 + AO356_13930 0.66 -0.6 3,162,137 + AO356_13930 0.66 +1.1 3,162,137 + AO356_13930 0.66 +0.2 3,162,138 - AO356_13930 0.66 +0.1 3,162,228 + AO356_13930 0.68 +1.0 3,162,256 - AO356_13930 0.69 -0.9 3,162,256 - AO356_13930 0.69 -2.1 3,162,256 - AO356_13930 0.69 -1.2 3,162,256 - AO356_13930 0.69 -0.3 3,162,256 - AO356_13930 0.69 +1.8 3,162,256 - AO356_13930 0.69 -0.7 3,162,462 + AO356_13930 0.75 +1.4 3,162,462 + AO356_13930 0.75 -0.3 3,162,480 + AO356_13930 0.75 -2.2 3,162,480 + AO356_13930 0.75 +0.2 3,162,480 + AO356_13930 0.75 +0.2 3,162,480 + AO356_13930 0.75 -2.6 3,162,480 + AO356_13930 0.75 +0.3 3,162,481 - AO356_13930 0.76 -0.2 3,162,481 - AO356_13930 0.76 +0.5 3,162,512 + AO356_13930 0.76 +0.5 3,162,512 + AO356_13930 0.76 -0.5 3,162,512 + AO356_13930 0.76 +0.0 3,162,512 + AO356_13930 0.76 +0.5 3,162,564 + AO356_13930 0.78 +0.2 3,162,564 + AO356_13930 0.78 -0.5 3,162,564 + AO356_13930 0.78 +0.2 3,162,564 + AO356_13930 0.78 +1.6 3,162,565 - AO356_13930 0.78 +0.2 3,162,847 - AO356_13930 0.86 +1.5 3,162,847 - AO356_13930 0.86 -0.2 3,162,868 - AO356_13930 0.87 -2.6 3,162,891 + AO356_13930 0.87 +0.0 3,162,892 - AO356_13930 0.87 +0.2 3,162,930 + AO356_13930 0.89 +0.5 3,162,930 + AO356_13930 0.89 -2.9 3,162,930 + AO356_13930 0.89 -2.7 3,162,930 + AO356_13930 0.89 +0.9 3,162,930 + AO356_13930 0.89 -1.6 3,162,930 + AO356_13930 0.89 -2.1 3,162,930 + AO356_13930 0.89 -0.4 3,162,930 + AO356_13930 0.89 -1.5 3,162,930 + AO356_13930 0.89 +1.0 3,162,930 + AO356_13930 0.89 -1.3 3,162,931 - AO356_13930 0.89 -0.2 3,162,931 - AO356_13930 0.89 -0.2 3,162,931 - AO356_13930 0.89 +0.2 3,162,931 - AO356_13930 0.89 +0.2 3,162,931 - AO356_13930 0.89 +0.7 3,162,931 - AO356_13930 0.89 -0.9 3,162,931 - AO356_13930 0.89 -0.9 3,162,931 - AO356_13930 0.89 +0.8 3,162,931 - AO356_13930 0.89 -0.6 3,162,931 - AO356_13930 0.89 +0.4 3,162,931 - AO356_13930 0.89 -1.8 3,162,931 - AO356_13930 0.89 +0.1 3,162,942 + AO356_13930 0.89 +0.7 3,163,080 + -2.6 3,163,080 + +0.4 3,163,080 + +1.1 3,163,080 + +0.9 3,163,080 + -0.3 3,163,080 + +0.6 3,163,081 - -0.7 3,163,081 - +1.1 3,163,081 - +0.8 3,163,146 + +0.0 3,163,146 + -0.0 3,163,147 - +1.1 3,163,147 - -0.4 3,163,147 - +0.1 3,163,147 - -0.5 3,163,147 - -0.2 3,163,147 - +0.8 3,163,173 + +0.2 3,163,173 + -0.6 3,163,173 + +0.0 3,163,233 + +0.7 3,163,281 + +0.3 3,163,281 + +0.7 3,163,281 + -1.0 3,163,457 - -0.6 3,163,472 + +1.1 3,163,497 + -1.1 3,163,497 + +0.7 3,163,497 + -1.5 3,163,498 - -0.7 3,163,498 - +1.3 3,163,498 - -1.1 3,163,498 - -0.7 3,163,671 + -0.6 3,163,671 + +0.7 3,163,672 - -2.3 3,163,778 + AO356_13935 0.16 +0.6 3,163,851 + AO356_13935 0.19 +1.0 3,164,010 + AO356_13935 0.28 -0.9 3,164,010 + AO356_13935 0.28 -1.1 3,164,011 - AO356_13935 0.28 -1.8 3,164,030 - AO356_13935 0.29 -1.6 3,164,030 - AO356_13935 0.29 +1.0 3,164,065 - AO356_13935 0.31 +0.2 3,164,070 + AO356_13935 0.31 +1.5 3,164,070 + AO356_13935 0.31 -0.0 3,164,070 + AO356_13935 0.31 +0.4 3,164,071 - AO356_13935 0.31 -1.0 3,164,110 - AO356_13935 0.33 -1.9 3,164,112 + AO356_13935 0.33 -0.6 3,164,112 + AO356_13935 0.33 -2.6 3,164,112 + AO356_13935 0.33 -0.3 3,164,112 + AO356_13935 0.33 -0.2 3,164,113 - AO356_13935 0.33 +0.2 3,164,191 - AO356_13935 0.38 +0.1
Or see this region's nucleotide sequence