Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_13785

Experiment: Benzalkonium Chloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_13780 and AO356_13785 overlap by 1 nucleotidesAO356_13785 and AO356_13790 are separated by 370 nucleotides AO356_13780: AO356_13780 - Zn-dependent protease, at 3,125,105 to 3,126,442 _13780 AO356_13785: AO356_13785 - peptidase C69, at 3,126,442 to 3,127,884 _13785 AO356_13790: AO356_13790 - choline dehydrogenase, at 3,128,255 to 3,129,958 _13790 Position (kb) 3126 3127 3128Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3125.455 kb on + strand, within AO356_13780at 3125.460 kb on + strand, within AO356_13780at 3125.460 kb on + strand, within AO356_13780at 3125.461 kb on - strand, within AO356_13780at 3125.496 kb on + strand, within AO356_13780at 3125.496 kb on + strand, within AO356_13780at 3125.497 kb on - strand, within AO356_13780at 3125.497 kb on - strand, within AO356_13780at 3125.497 kb on - strand, within AO356_13780at 3125.661 kb on + strand, within AO356_13780at 3125.661 kb on + strand, within AO356_13780at 3125.661 kb on + strand, within AO356_13780at 3125.661 kb on + strand, within AO356_13780at 3125.662 kb on - strand, within AO356_13780at 3125.662 kb on - strand, within AO356_13780at 3125.763 kb on + strand, within AO356_13780at 3125.881 kb on - strand, within AO356_13780at 3125.881 kb on - strand, within AO356_13780at 3125.881 kb on - strand, within AO356_13780at 3126.006 kb on + strand, within AO356_13780at 3126.006 kb on + strand, within AO356_13780at 3126.006 kb on + strand, within AO356_13780at 3126.007 kb on - strand, within AO356_13780at 3126.007 kb on - strand, within AO356_13780at 3126.007 kb on - strand, within AO356_13780at 3126.382 kb on + strandat 3126.620 kb on + strand, within AO356_13785at 3126.974 kb on + strand, within AO356_13785at 3126.974 kb on + strand, within AO356_13785at 3126.975 kb on - strand, within AO356_13785at 3126.975 kb on - strand, within AO356_13785at 3126.975 kb on - strand, within AO356_13785at 3126.975 kb on - strand, within AO356_13785at 3127.082 kb on + strand, within AO356_13785at 3127.082 kb on + strand, within AO356_13785at 3127.083 kb on - strand, within AO356_13785at 3127.415 kb on + strand, within AO356_13785at 3127.415 kb on + strand, within AO356_13785at 3127.415 kb on + strand, within AO356_13785at 3127.415 kb on + strand, within AO356_13785at 3127.415 kb on + strand, within AO356_13785at 3127.416 kb on - strand, within AO356_13785at 3127.416 kb on - strand, within AO356_13785at 3127.416 kb on - strand, within AO356_13785at 3127.416 kb on - strand, within AO356_13785at 3127.512 kb on - strand, within AO356_13785at 3127.560 kb on - strand, within AO356_13785at 3127.560 kb on - strand, within AO356_13785at 3127.560 kb on - strand, within AO356_13785at 3127.694 kb on + strand, within AO356_13785at 3127.695 kb on - strand, within AO356_13785at 3127.695 kb on - strand, within AO356_13785at 3127.695 kb on - strand, within AO356_13785at 3127.808 kb on + strandat 3127.808 kb on + strandat 3127.809 kb on - strandat 3127.809 kb on - strandat 3127.944 kb on + strandat 3127.944 kb on + strandat 3127.944 kb on + strandat 3127.945 kb on - strandat 3127.949 kb on + strandat 3127.949 kb on + strandat 3127.949 kb on + strandat 3127.950 kb on - strandat 3127.950 kb on - strandat 3127.977 kb on + strandat 3127.977 kb on + strandat 3127.977 kb on + strandat 3127.977 kb on + strandat 3127.977 kb on + strandat 3127.977 kb on + strandat 3127.977 kb on + strandat 3127.977 kb on + strandat 3128.256 kb on + strandat 3128.319 kb on + strandat 3128.319 kb on + strandat 3128.320 kb on - strandat 3128.320 kb on - strandat 3128.320 kb on - strandat 3128.320 kb on - strandat 3128.320 kb on - strandat 3128.322 kb on + strandat 3128.712 kb on + strand, within AO356_13790at 3128.712 kb on + strand, within AO356_13790at 3128.712 kb on + strand, within AO356_13790at 3128.712 kb on + strand, within AO356_13790at 3128.712 kb on + strand, within AO356_13790at 3128.712 kb on + strand, within AO356_13790at 3128.713 kb on - strand, within AO356_13790at 3128.713 kb on - strand, within AO356_13790at 3128.713 kb on - strand, within AO356_13790at 3128.713 kb on - strand, within AO356_13790at 3128.713 kb on - strand, within AO356_13790at 3128.713 kb on - strand, within AO356_13790at 3128.841 kb on + strand, within AO356_13790at 3128.841 kb on + strand, within AO356_13790at 3128.841 kb on + strand, within AO356_13790at 3128.841 kb on + strand, within AO356_13790at 3128.841 kb on + strand, within AO356_13790at 3128.841 kb on + strand, within AO356_13790at 3128.841 kb on + strand, within AO356_13790at 3128.842 kb on - strand, within AO356_13790at 3128.842 kb on - strand, within AO356_13790at 3128.842 kb on - strand, within AO356_13790at 3128.842 kb on - strand, within AO356_13790at 3128.845 kb on + strand, within AO356_13790at 3128.845 kb on + strand, within AO356_13790at 3128.845 kb on + strand, within AO356_13790at 3128.846 kb on - strand, within AO356_13790at 3128.869 kb on - strand, within AO356_13790at 3128.869 kb on - strand, within AO356_13790

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml
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3,125,455 + AO356_13780 0.26 +2.0
3,125,460 + AO356_13780 0.27 -0.1
3,125,460 + AO356_13780 0.27 -1.4
3,125,461 - AO356_13780 0.27 +0.4
3,125,496 + AO356_13780 0.29 +0.3
3,125,496 + AO356_13780 0.29 -1.5
3,125,497 - AO356_13780 0.29 +0.2
3,125,497 - AO356_13780 0.29 -0.4
3,125,497 - AO356_13780 0.29 +0.6
3,125,661 + AO356_13780 0.42 -0.1
3,125,661 + AO356_13780 0.42 +0.7
3,125,661 + AO356_13780 0.42 -1.3
3,125,661 + AO356_13780 0.42 +0.6
3,125,662 - AO356_13780 0.42 +0.8
3,125,662 - AO356_13780 0.42 +1.5
3,125,763 + AO356_13780 0.49 -0.1
3,125,881 - AO356_13780 0.58 -0.8
3,125,881 - AO356_13780 0.58 -0.6
3,125,881 - AO356_13780 0.58 -1.5
3,126,006 + AO356_13780 0.67 -1.0
3,126,006 + AO356_13780 0.67 -0.2
3,126,006 + AO356_13780 0.67 -0.5
3,126,007 - AO356_13780 0.67 +0.7
3,126,007 - AO356_13780 0.67 -2.8
3,126,007 - AO356_13780 0.67 -1.1
3,126,382 + -0.5
3,126,620 + AO356_13785 0.12 -2.9
3,126,974 + AO356_13785 0.37 -0.2
3,126,974 + AO356_13785 0.37 +1.0
3,126,975 - AO356_13785 0.37 +0.8
3,126,975 - AO356_13785 0.37 +0.6
3,126,975 - AO356_13785 0.37 +0.7
3,126,975 - AO356_13785 0.37 +0.1
3,127,082 + AO356_13785 0.44 +0.9
3,127,082 + AO356_13785 0.44 -0.5
3,127,083 - AO356_13785 0.44 -1.1
3,127,415 + AO356_13785 0.67 -0.4
3,127,415 + AO356_13785 0.67 -0.3
3,127,415 + AO356_13785 0.67 -1.1
3,127,415 + AO356_13785 0.67 -0.6
3,127,415 + AO356_13785 0.67 -0.2
3,127,416 - AO356_13785 0.67 -0.6
3,127,416 - AO356_13785 0.67 -1.0
3,127,416 - AO356_13785 0.67 -0.3
3,127,416 - AO356_13785 0.67 -0.2
3,127,512 - AO356_13785 0.74 -0.5
3,127,560 - AO356_13785 0.77 +0.7
3,127,560 - AO356_13785 0.77 +0.1
3,127,560 - AO356_13785 0.77 -0.7
3,127,694 + AO356_13785 0.87 +0.2
3,127,695 - AO356_13785 0.87 +0.4
3,127,695 - AO356_13785 0.87 +0.6
3,127,695 - AO356_13785 0.87 +0.4
3,127,808 + -1.2
3,127,808 + +1.2
3,127,809 - +0.4
3,127,809 - -0.2
3,127,944 + -0.0
3,127,944 + -1.0
3,127,944 + -2.2
3,127,945 - +0.6
3,127,949 + -0.8
3,127,949 + -0.8
3,127,949 + -0.2
3,127,950 - -0.6
3,127,950 - +0.6
3,127,977 + +0.1
3,127,977 + -1.0
3,127,977 + +0.9
3,127,977 + +1.3
3,127,977 + +0.1
3,127,977 + -1.8
3,127,977 + +0.1
3,127,977 + +0.7
3,128,256 + -0.6
3,128,319 + +1.3
3,128,319 + +0.9
3,128,320 - +0.5
3,128,320 - +2.5
3,128,320 - +1.0
3,128,320 - +0.9
3,128,320 - +0.6
3,128,322 + +1.7
3,128,712 + AO356_13790 0.27 -0.8
3,128,712 + AO356_13790 0.27 -0.7
3,128,712 + AO356_13790 0.27 +0.9
3,128,712 + AO356_13790 0.27 +2.0
3,128,712 + AO356_13790 0.27 +1.1
3,128,712 + AO356_13790 0.27 -0.5
3,128,713 - AO356_13790 0.27 +1.9
3,128,713 - AO356_13790 0.27 -0.8
3,128,713 - AO356_13790 0.27 -0.2
3,128,713 - AO356_13790 0.27 +1.2
3,128,713 - AO356_13790 0.27 +0.6
3,128,713 - AO356_13790 0.27 +2.1
3,128,841 + AO356_13790 0.34 +0.8
3,128,841 + AO356_13790 0.34 +0.3
3,128,841 + AO356_13790 0.34 +0.2
3,128,841 + AO356_13790 0.34 +0.6
3,128,841 + AO356_13790 0.34 +1.5
3,128,841 + AO356_13790 0.34 +1.3
3,128,841 + AO356_13790 0.34 +2.3
3,128,842 - AO356_13790 0.34 +0.7
3,128,842 - AO356_13790 0.34 +0.8
3,128,842 - AO356_13790 0.34 +0.3
3,128,842 - AO356_13790 0.34 +1.6
3,128,845 + AO356_13790 0.35 +1.2
3,128,845 + AO356_13790 0.35 +0.2
3,128,845 + AO356_13790 0.35 +1.7
3,128,846 - AO356_13790 0.35 +0.9
3,128,869 - AO356_13790 0.36 +0.8
3,128,869 - AO356_13790 0.36 +1.7

Or see this region's nucleotide sequence