Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_12225

Experiment: Benzalkonium Chloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_12220 and AO356_12225 are separated by 82 nucleotidesAO356_12225 and AO356_12230 are separated by 1 nucleotides AO356_12220: AO356_12220 - type IV secretion protein Rhs, at 2,782,446 to 2,786,459 _12220 AO356_12225: AO356_12225 - hypothetical protein, at 2,786,542 to 2,786,820 _12225 AO356_12230: AO356_12230 - type IV secretion protein Rhs, at 2,786,822 to 2,791,261 _12230 Position (kb) 2786 2787Strain fitness (log2 ratio) -2 -1 0 1 2at 2786.023 kb on + strand, within AO356_12220at 2786.024 kb on - strand, within AO356_12220at 2786.202 kb on + strandat 2786.379 kb on + strandat 2786.379 kb on + strandat 2786.379 kb on + strandat 2786.379 kb on + strandat 2786.380 kb on - strandat 2786.380 kb on - strandat 2786.380 kb on - strandat 2786.380 kb on - strandat 2786.380 kb on - strandat 2786.380 kb on - strandat 2786.824 kb on - strandat 2786.892 kb on + strandat 2786.893 kb on - strandat 2786.899 kb on + strandat 2786.937 kb on + strandat 2786.937 kb on + strandat 2786.937 kb on + strandat 2786.937 kb on + strandat 2786.937 kb on + strandat 2786.937 kb on + strandat 2786.938 kb on - strandat 2786.938 kb on - strandat 2786.938 kb on - strandat 2786.938 kb on - strandat 2786.938 kb on - strandat 2786.938 kb on - strandat 2786.938 kb on - strandat 2786.938 kb on - strandat 2786.938 kb on - strandat 2787.111 kb on + strandat 2787.112 kb on - strandat 2787.138 kb on + strandat 2787.138 kb on + strandat 2787.213 kb on + strandat 2787.214 kb on - strandat 2787.214 kb on - strandat 2787.303 kb on + strand, within AO356_12230at 2787.309 kb on + strand, within AO356_12230at 2787.310 kb on - strand, within AO356_12230at 2787.393 kb on + strand, within AO356_12230at 2787.393 kb on + strand, within AO356_12230at 2787.393 kb on + strand, within AO356_12230at 2787.393 kb on + strand, within AO356_12230at 2787.393 kb on + strand, within AO356_12230at 2787.393 kb on + strand, within AO356_12230at 2787.394 kb on - strand, within AO356_12230at 2787.394 kb on - strand, within AO356_12230at 2787.394 kb on - strand, within AO356_12230at 2787.394 kb on - strand, within AO356_12230at 2787.420 kb on + strand, within AO356_12230at 2787.421 kb on - strand, within AO356_12230at 2787.456 kb on + strand, within AO356_12230at 2787.456 kb on + strand, within AO356_12230at 2787.456 kb on + strand, within AO356_12230at 2787.456 kb on + strand, within AO356_12230at 2787.460 kb on - strand, within AO356_12230at 2787.460 kb on - strand, within AO356_12230at 2787.460 kb on - strand, within AO356_12230at 2787.460 kb on - strand, within AO356_12230at 2787.460 kb on - strand, within AO356_12230at 2787.573 kb on + strand, within AO356_12230at 2787.573 kb on + strand, within AO356_12230at 2787.573 kb on + strand, within AO356_12230at 2787.573 kb on + strand, within AO356_12230at 2787.574 kb on - strand, within AO356_12230at 2787.574 kb on - strand, within AO356_12230at 2787.574 kb on - strand, within AO356_12230at 2787.642 kb on + strand, within AO356_12230at 2787.643 kb on - strand, within AO356_12230at 2787.643 kb on - strand, within AO356_12230at 2787.643 kb on - strand, within AO356_12230at 2787.643 kb on - strand, within AO356_12230at 2787.643 kb on - strand, within AO356_12230at 2787.648 kb on + strand, within AO356_12230at 2787.648 kb on + strand, within AO356_12230at 2787.648 kb on + strand, within AO356_12230at 2787.648 kb on + strand, within AO356_12230at 2787.648 kb on + strand, within AO356_12230at 2787.648 kb on + strand, within AO356_12230at 2787.649 kb on - strand, within AO356_12230at 2787.649 kb on - strand, within AO356_12230at 2787.742 kb on - strand, within AO356_12230at 2787.742 kb on - strand, within AO356_12230at 2787.777 kb on + strand, within AO356_12230at 2787.778 kb on - strand, within AO356_12230at 2787.778 kb on - strand, within AO356_12230at 2787.778 kb on - strand, within AO356_12230at 2787.789 kb on - strand, within AO356_12230

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml
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2,786,023 + AO356_12220 0.89 -1.1
2,786,024 - AO356_12220 0.89 +0.2
2,786,202 + -0.4
2,786,379 + -0.4
2,786,379 + +1.5
2,786,379 + +0.4
2,786,379 + +0.2
2,786,380 - -0.2
2,786,380 - +1.2
2,786,380 - +0.8
2,786,380 - -0.4
2,786,380 - +0.0
2,786,380 - +0.0
2,786,824 - +0.7
2,786,892 + +0.6
2,786,893 - -0.0
2,786,899 + -2.4
2,786,937 + +1.7
2,786,937 + +0.8
2,786,937 + +2.2
2,786,937 + +1.4
2,786,937 + +0.9
2,786,937 + +0.4
2,786,938 - +0.8
2,786,938 - +0.2
2,786,938 - +0.7
2,786,938 - +0.3
2,786,938 - +0.6
2,786,938 - -0.9
2,786,938 - -0.1
2,786,938 - -0.5
2,786,938 - +1.0
2,787,111 + -0.3
2,787,112 - +0.6
2,787,138 + -1.8
2,787,138 + +0.5
2,787,213 + -0.3
2,787,214 - -0.3
2,787,214 - -0.6
2,787,303 + AO356_12230 0.11 +0.7
2,787,309 + AO356_12230 0.11 +0.4
2,787,310 - AO356_12230 0.11 +0.3
2,787,393 + AO356_12230 0.13 -0.0
2,787,393 + AO356_12230 0.13 -0.1
2,787,393 + AO356_12230 0.13 -0.4
2,787,393 + AO356_12230 0.13 -1.0
2,787,393 + AO356_12230 0.13 +0.5
2,787,393 + AO356_12230 0.13 -0.3
2,787,394 - AO356_12230 0.13 -0.4
2,787,394 - AO356_12230 0.13 -1.4
2,787,394 - AO356_12230 0.13 +1.2
2,787,394 - AO356_12230 0.13 +0.3
2,787,420 + AO356_12230 0.13 -1.4
2,787,421 - AO356_12230 0.13 +0.2
2,787,456 + AO356_12230 0.14 -1.6
2,787,456 + AO356_12230 0.14 +0.6
2,787,456 + AO356_12230 0.14 +0.6
2,787,456 + AO356_12230 0.14 -0.5
2,787,460 - AO356_12230 0.14 +0.0
2,787,460 - AO356_12230 0.14 +0.5
2,787,460 - AO356_12230 0.14 +0.5
2,787,460 - AO356_12230 0.14 +0.3
2,787,460 - AO356_12230 0.14 -0.1
2,787,573 + AO356_12230 0.17 -0.4
2,787,573 + AO356_12230 0.17 +1.2
2,787,573 + AO356_12230 0.17 +0.2
2,787,573 + AO356_12230 0.17 -0.2
2,787,574 - AO356_12230 0.17 +0.9
2,787,574 - AO356_12230 0.17 -1.3
2,787,574 - AO356_12230 0.17 -0.1
2,787,642 + AO356_12230 0.18 -0.0
2,787,643 - AO356_12230 0.18 -1.1
2,787,643 - AO356_12230 0.18 -0.2
2,787,643 - AO356_12230 0.18 +0.4
2,787,643 - AO356_12230 0.18 +0.9
2,787,643 - AO356_12230 0.18 -0.3
2,787,648 + AO356_12230 0.19 +0.3
2,787,648 + AO356_12230 0.19 +0.4
2,787,648 + AO356_12230 0.19 +1.3
2,787,648 + AO356_12230 0.19 +1.1
2,787,648 + AO356_12230 0.19 +0.3
2,787,648 + AO356_12230 0.19 +0.4
2,787,649 - AO356_12230 0.19 -1.2
2,787,649 - AO356_12230 0.19 -0.7
2,787,742 - AO356_12230 0.21 -1.6
2,787,742 - AO356_12230 0.21 +0.0
2,787,777 + AO356_12230 0.22 -1.2
2,787,778 - AO356_12230 0.22 +1.1
2,787,778 - AO356_12230 0.22 -0.5
2,787,778 - AO356_12230 0.22 -0.0
2,787,789 - AO356_12230 0.22 -0.9

Or see this region's nucleotide sequence