Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08350

Experiment: Benzalkonium Chloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08345 and AO356_08350 overlap by 1 nucleotidesAO356_08350 and AO356_08355 overlap by 1 nucleotides AO356_08345: AO356_08345 - urea ABC transporter permease, at 1,876,649 to 1,878,151 _08345 AO356_08350: AO356_08350 - urea ABC transporter permease subunit UrtC, at 1,878,151 to 1,879,227 _08350 AO356_08355: AO356_08355 - ABC transporter ATP-binding protein, at 1,879,227 to 1,880,087 _08355 Position (kb) 1878 1879 1880Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1877.281 kb on + strand, within AO356_08345at 1877.281 kb on + strand, within AO356_08345at 1877.281 kb on + strand, within AO356_08345at 1877.281 kb on + strand, within AO356_08345at 1877.281 kb on + strand, within AO356_08345at 1877.281 kb on + strand, within AO356_08345at 1877.282 kb on - strand, within AO356_08345at 1877.282 kb on - strand, within AO356_08345at 1877.282 kb on - strand, within AO356_08345at 1877.282 kb on - strand, within AO356_08345at 1877.330 kb on - strand, within AO356_08345at 1877.399 kb on + strand, within AO356_08345at 1877.399 kb on + strand, within AO356_08345at 1877.399 kb on + strand, within AO356_08345at 1877.399 kb on + strand, within AO356_08345at 1877.399 kb on + strand, within AO356_08345at 1877.399 kb on + strand, within AO356_08345at 1877.399 kb on + strand, within AO356_08345at 1877.399 kb on + strand, within AO356_08345at 1877.399 kb on + strand, within AO356_08345at 1877.400 kb on - strand, within AO356_08345at 1877.400 kb on - strand, within AO356_08345at 1877.400 kb on - strand, within AO356_08345at 1877.400 kb on - strand, within AO356_08345at 1877.400 kb on - strand, within AO356_08345at 1877.400 kb on - strand, within AO356_08345at 1877.400 kb on - strand, within AO356_08345at 1877.400 kb on - strand, within AO356_08345at 1877.400 kb on - strand, within AO356_08345at 1877.451 kb on - strand, within AO356_08345at 1877.451 kb on - strand, within AO356_08345at 1877.515 kb on + strand, within AO356_08345at 1877.691 kb on - strand, within AO356_08345at 1877.936 kb on + strand, within AO356_08345at 1877.936 kb on + strand, within AO356_08345at 1877.936 kb on + strand, within AO356_08345at 1877.936 kb on + strand, within AO356_08345at 1877.937 kb on - strand, within AO356_08345at 1877.937 kb on - strand, within AO356_08345at 1877.937 kb on - strand, within AO356_08345at 1877.937 kb on - strand, within AO356_08345at 1877.937 kb on - strand, within AO356_08345at 1878.295 kb on + strand, within AO356_08350at 1878.295 kb on + strand, within AO356_08350at 1878.329 kb on - strand, within AO356_08350at 1878.329 kb on - strand, within AO356_08350at 1878.329 kb on - strand, within AO356_08350at 1878.368 kb on - strand, within AO356_08350at 1878.433 kb on + strand, within AO356_08350at 1878.433 kb on + strand, within AO356_08350at 1878.433 kb on + strand, within AO356_08350at 1878.433 kb on + strand, within AO356_08350at 1878.433 kb on + strand, within AO356_08350at 1878.433 kb on + strand, within AO356_08350at 1878.433 kb on + strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.508 kb on + strand, within AO356_08350at 1878.622 kb on + strand, within AO356_08350at 1878.622 kb on + strand, within AO356_08350at 1878.622 kb on + strand, within AO356_08350at 1878.622 kb on + strand, within AO356_08350at 1878.895 kb on + strand, within AO356_08350at 1878.967 kb on + strand, within AO356_08350at 1878.967 kb on + strand, within AO356_08350at 1878.967 kb on + strand, within AO356_08350at 1878.967 kb on + strand, within AO356_08350at 1878.967 kb on + strand, within AO356_08350at 1878.968 kb on - strand, within AO356_08350at 1878.968 kb on - strand, within AO356_08350at 1878.968 kb on - strand, within AO356_08350at 1879.136 kb on - strandat 1879.136 kb on - strandat 1879.180 kb on + strandat 1879.180 kb on + strandat 1879.180 kb on + strandat 1879.181 kb on - strandat 1879.181 kb on - strandat 1879.181 kb on - strandat 1879.181 kb on - strandat 1879.181 kb on - strandat 1879.181 kb on - strandat 1879.242 kb on - strandat 1879.425 kb on + strand, within AO356_08355at 1879.425 kb on + strand, within AO356_08355at 1879.425 kb on + strand, within AO356_08355at 1879.425 kb on + strand, within AO356_08355at 1879.426 kb on - strand, within AO356_08355at 1879.426 kb on - strand, within AO356_08355at 1879.426 kb on - strand, within AO356_08355at 1879.758 kb on - strand, within AO356_08355at 1879.760 kb on + strand, within AO356_08355at 1879.760 kb on + strand, within AO356_08355at 1879.760 kb on + strand, within AO356_08355at 1879.760 kb on + strand, within AO356_08355at 1879.760 kb on + strand, within AO356_08355at 1879.761 kb on - strand, within AO356_08355at 1879.761 kb on - strand, within AO356_08355at 1879.761 kb on - strand, within AO356_08355at 1879.761 kb on - strand, within AO356_08355at 1879.761 kb on - strand, within AO356_08355at 1879.761 kb on - strand, within AO356_08355at 1879.761 kb on - strand, within AO356_08355at 1879.761 kb on - strand, within AO356_08355at 1879.761 kb on - strand, within AO356_08355at 1879.761 kb on - strand, within AO356_08355at 1879.761 kb on - strand, within AO356_08355at 1880.073 kb on + strandat 1880.073 kb on + strandat 1880.073 kb on + strandat 1880.073 kb on + strandat 1880.073 kb on + strandat 1880.074 kb on - strandat 1880.074 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml
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1,877,281 + AO356_08345 0.42 +1.0
1,877,281 + AO356_08345 0.42 -0.1
1,877,281 + AO356_08345 0.42 -3.0
1,877,281 + AO356_08345 0.42 +0.5
1,877,281 + AO356_08345 0.42 +0.4
1,877,281 + AO356_08345 0.42 -1.3
1,877,282 - AO356_08345 0.42 -2.3
1,877,282 - AO356_08345 0.42 -0.9
1,877,282 - AO356_08345 0.42 -0.4
1,877,282 - AO356_08345 0.42 -2.6
1,877,330 - AO356_08345 0.45 +1.1
1,877,399 + AO356_08345 0.50 +0.0
1,877,399 + AO356_08345 0.50 -0.6
1,877,399 + AO356_08345 0.50 -1.6
1,877,399 + AO356_08345 0.50 +0.4
1,877,399 + AO356_08345 0.50 +0.7
1,877,399 + AO356_08345 0.50 -0.1
1,877,399 + AO356_08345 0.50 -0.7
1,877,399 + AO356_08345 0.50 -0.1
1,877,399 + AO356_08345 0.50 -0.3
1,877,400 - AO356_08345 0.50 -1.3
1,877,400 - AO356_08345 0.50 -1.1
1,877,400 - AO356_08345 0.50 -0.5
1,877,400 - AO356_08345 0.50 -1.3
1,877,400 - AO356_08345 0.50 +0.4
1,877,400 - AO356_08345 0.50 +0.4
1,877,400 - AO356_08345 0.50 -0.2
1,877,400 - AO356_08345 0.50 -0.7
1,877,400 - AO356_08345 0.50 -0.5
1,877,451 - AO356_08345 0.53 -0.2
1,877,451 - AO356_08345 0.53 +0.6
1,877,515 + AO356_08345 0.58 -0.4
1,877,691 - AO356_08345 0.69 +1.3
1,877,936 + AO356_08345 0.86 -0.0
1,877,936 + AO356_08345 0.86 +0.2
1,877,936 + AO356_08345 0.86 -0.6
1,877,936 + AO356_08345 0.86 -0.1
1,877,937 - AO356_08345 0.86 +0.4
1,877,937 - AO356_08345 0.86 +0.1
1,877,937 - AO356_08345 0.86 +1.3
1,877,937 - AO356_08345 0.86 +0.6
1,877,937 - AO356_08345 0.86 +0.5
1,878,295 + AO356_08350 0.13 +0.2
1,878,295 + AO356_08350 0.13 -1.3
1,878,329 - AO356_08350 0.17 -0.8
1,878,329 - AO356_08350 0.17 -0.1
1,878,329 - AO356_08350 0.17 +0.6
1,878,368 - AO356_08350 0.20 -1.8
1,878,433 + AO356_08350 0.26 +0.2
1,878,433 + AO356_08350 0.26 -1.0
1,878,433 + AO356_08350 0.26 -1.0
1,878,433 + AO356_08350 0.26 +0.0
1,878,433 + AO356_08350 0.26 -0.5
1,878,433 + AO356_08350 0.26 -0.3
1,878,433 + AO356_08350 0.26 +0.0
1,878,434 - AO356_08350 0.26 -2.2
1,878,434 - AO356_08350 0.26 -0.3
1,878,434 - AO356_08350 0.26 -0.7
1,878,434 - AO356_08350 0.26 -0.0
1,878,434 - AO356_08350 0.26 -0.2
1,878,434 - AO356_08350 0.26 +0.7
1,878,434 - AO356_08350 0.26 -0.0
1,878,434 - AO356_08350 0.26 -1.6
1,878,508 + AO356_08350 0.33 +0.3
1,878,622 + AO356_08350 0.44 -0.0
1,878,622 + AO356_08350 0.44 -0.8
1,878,622 + AO356_08350 0.44 +0.2
1,878,622 + AO356_08350 0.44 -0.5
1,878,895 + AO356_08350 0.69 +0.1
1,878,967 + AO356_08350 0.76 +0.9
1,878,967 + AO356_08350 0.76 +0.3
1,878,967 + AO356_08350 0.76 +2.1
1,878,967 + AO356_08350 0.76 -0.1
1,878,967 + AO356_08350 0.76 -0.2
1,878,968 - AO356_08350 0.76 -0.1
1,878,968 - AO356_08350 0.76 -0.0
1,878,968 - AO356_08350 0.76 +0.8
1,879,136 - +0.6
1,879,136 - +0.0
1,879,180 + +0.6
1,879,180 + +0.0
1,879,180 + -0.2
1,879,181 - +1.2
1,879,181 - +0.8
1,879,181 - -0.3
1,879,181 - -0.3
1,879,181 - -0.3
1,879,181 - -0.9
1,879,242 - -0.6
1,879,425 + AO356_08355 0.23 -0.3
1,879,425 + AO356_08355 0.23 +0.4
1,879,425 + AO356_08355 0.23 -0.0
1,879,425 + AO356_08355 0.23 -1.0
1,879,426 - AO356_08355 0.23 +1.2
1,879,426 - AO356_08355 0.23 -0.2
1,879,426 - AO356_08355 0.23 -1.9
1,879,758 - AO356_08355 0.62 +0.9
1,879,760 + AO356_08355 0.62 +0.5
1,879,760 + AO356_08355 0.62 -0.3
1,879,760 + AO356_08355 0.62 -1.5
1,879,760 + AO356_08355 0.62 -1.5
1,879,760 + AO356_08355 0.62 -1.1
1,879,761 - AO356_08355 0.62 -0.1
1,879,761 - AO356_08355 0.62 +1.4
1,879,761 - AO356_08355 0.62 -0.1
1,879,761 - AO356_08355 0.62 +0.3
1,879,761 - AO356_08355 0.62 -2.3
1,879,761 - AO356_08355 0.62 -0.5
1,879,761 - AO356_08355 0.62 +0.2
1,879,761 - AO356_08355 0.62 -0.3
1,879,761 - AO356_08355 0.62 -0.4
1,879,761 - AO356_08355 0.62 +0.9
1,879,761 - AO356_08355 0.62 -1.4
1,880,073 + -0.3
1,880,073 + +0.3
1,880,073 + -0.8
1,880,073 + +1.1
1,880,073 + +0.5
1,880,074 - -0.7
1,880,074 - -0.9

Or see this region's nucleotide sequence