Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07010

Experiment: Benzalkonium Chloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07005 and AO356_07010 are separated by 273 nucleotidesAO356_07010 and AO356_07015 are separated by 0 nucleotidesAO356_07015 and AO356_07020 are separated by 7 nucleotides AO356_07005: AO356_07005 - ABC transporter ATP-binding protein, at 1,547,629 to 1,548,438 _07005 AO356_07010: AO356_07010 - D-arabinose 5-phosphate isomerase, at 1,548,712 to 1,549,686 _07010 AO356_07015: AO356_07015 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 1,549,687 to 1,550,211 _07015 AO356_07020: AO356_07020 - LPS export ABC transporter periplasmic protein LptC, at 1,550,219 to 1,550,788 _07020 Position (kb) 1548 1549 1550Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1547.792 kb on + strand, within AO356_07005at 1547.792 kb on + strand, within AO356_07005at 1547.798 kb on + strand, within AO356_07005at 1547.936 kb on + strand, within AO356_07005at 1548.419 kb on + strandat 1548.419 kb on + strandat 1548.440 kb on + strandat 1548.440 kb on + strandat 1548.441 kb on - strandat 1548.441 kb on - strandat 1548.441 kb on - strandat 1548.528 kb on + strandat 1548.528 kb on + strandat 1548.528 kb on + strandat 1548.528 kb on + strandat 1548.528 kb on + strandat 1548.528 kb on + strandat 1548.529 kb on - strandat 1548.529 kb on - strandat 1548.529 kb on - strandat 1548.529 kb on - strandat 1548.529 kb on - strandat 1548.529 kb on - strandat 1548.529 kb on - strandat 1548.529 kb on - strandat 1548.531 kb on - strandat 1548.531 kb on - strandat 1548.531 kb on - strandat 1548.590 kb on + strandat 1548.590 kb on + strandat 1548.590 kb on + strandat 1548.604 kb on + strandat 1548.646 kb on + strandat 1548.646 kb on + strandat 1548.672 kb on + strandat 1548.672 kb on + strandat 1548.674 kb on + strandat 1548.697 kb on + strandat 1548.699 kb on + strandat 1548.699 kb on + strandat 1548.699 kb on + strandat 1548.699 kb on + strandat 1549.684 kb on + strandat 1549.684 kb on + strandat 1549.684 kb on + strandat 1549.684 kb on + strandat 1549.684 kb on + strandat 1550.218 kb on + strandat 1550.218 kb on + strandat 1550.218 kb on + strandat 1550.654 kb on + strand, within AO356_07020

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml
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1,547,792 + AO356_07005 0.20 -2.1
1,547,792 + AO356_07005 0.20 -1.1
1,547,798 + AO356_07005 0.21 -1.9
1,547,936 + AO356_07005 0.38 -1.7
1,548,419 + +0.1
1,548,419 + -3.2
1,548,440 + +0.5
1,548,440 + -1.9
1,548,441 - -2.2
1,548,441 - -1.1
1,548,441 - -0.5
1,548,528 + -1.1
1,548,528 + -1.7
1,548,528 + -1.0
1,548,528 + -2.6
1,548,528 + -2.8
1,548,528 + -2.4
1,548,529 - +4.0
1,548,529 - +3.5
1,548,529 - +3.9
1,548,529 - +5.5
1,548,529 - +3.3
1,548,529 - +3.8
1,548,529 - +3.7
1,548,529 - +4.1
1,548,531 - +4.3
1,548,531 - +4.0
1,548,531 - +5.1
1,548,590 + -3.3
1,548,590 + -2.6
1,548,590 + -3.4
1,548,604 + -0.2
1,548,646 + -1.7
1,548,646 + -2.8
1,548,672 + -2.4
1,548,672 + -3.4
1,548,674 + -0.7
1,548,697 + -1.4
1,548,699 + -3.0
1,548,699 + -1.5
1,548,699 + -3.2
1,548,699 + -3.1
1,549,684 + -0.9
1,549,684 + -1.8
1,549,684 + +1.1
1,549,684 + -0.4
1,549,684 + -0.6
1,550,218 + +2.8
1,550,218 + +4.6
1,550,218 + +3.5
1,550,654 + AO356_07020 0.76 +4.2

Or see this region's nucleotide sequence