Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07005

Experiment: Benzalkonium Chloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06995 and AO356_07000 overlap by 1 nucleotidesAO356_07000 and AO356_07005 overlap by 1 nucleotidesAO356_07005 and AO356_07010 are separated by 273 nucleotides AO356_06995: AO356_06995 - outer membrane lipid asymmetry maintenance protein MlaD, at 1,546,365 to 1,546,832 _06995 AO356_07000: AO356_07000 - ABC transporter permease, at 1,546,832 to 1,547,629 _07000 AO356_07005: AO356_07005 - ABC transporter ATP-binding protein, at 1,547,629 to 1,548,438 _07005 AO356_07010: AO356_07010 - D-arabinose 5-phosphate isomerase, at 1,548,712 to 1,549,686 _07010 Position (kb) 1547 1548 1549Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1546.712 kb on + strand, within AO356_06995at 1546.713 kb on - strand, within AO356_06995at 1546.714 kb on + strand, within AO356_06995at 1546.714 kb on + strandat 1546.714 kb on + strand, within AO356_06995at 1546.714 kb on + strand, within AO356_06995at 1546.715 kb on - strand, within AO356_06995at 1546.715 kb on - strand, within AO356_06995at 1546.715 kb on - strand, within AO356_06995at 1546.715 kb on - strand, within AO356_06995at 1546.715 kb on - strand, within AO356_06995at 1546.715 kb on - strand, within AO356_06995at 1546.715 kb on - strand, within AO356_06995at 1546.719 kb on - strand, within AO356_06995at 1546.719 kb on - strand, within AO356_06995at 1546.864 kb on + strandat 1546.896 kb on + strandat 1547.193 kb on + strand, within AO356_07000at 1547.193 kb on + strand, within AO356_07000at 1547.193 kb on + strand, within AO356_07000at 1547.193 kb on + strand, within AO356_07000at 1547.193 kb on + strand, within AO356_07000at 1547.376 kb on + strand, within AO356_07000at 1547.376 kb on + strand, within AO356_07000at 1547.652 kb on + strandat 1547.792 kb on + strand, within AO356_07005at 1547.792 kb on + strand, within AO356_07005at 1547.798 kb on + strand, within AO356_07005at 1547.936 kb on + strand, within AO356_07005at 1548.419 kb on + strandat 1548.419 kb on + strandat 1548.440 kb on + strandat 1548.440 kb on + strandat 1548.441 kb on - strandat 1548.441 kb on - strandat 1548.441 kb on - strandat 1548.528 kb on + strandat 1548.528 kb on + strandat 1548.528 kb on + strandat 1548.528 kb on + strandat 1548.528 kb on + strandat 1548.528 kb on + strandat 1548.529 kb on - strandat 1548.529 kb on - strandat 1548.529 kb on - strandat 1548.529 kb on - strandat 1548.529 kb on - strandat 1548.529 kb on - strandat 1548.529 kb on - strandat 1548.529 kb on - strandat 1548.531 kb on - strandat 1548.531 kb on - strandat 1548.531 kb on - strandat 1548.590 kb on + strandat 1548.590 kb on + strandat 1548.590 kb on + strandat 1548.604 kb on + strandat 1548.646 kb on + strandat 1548.646 kb on + strandat 1548.672 kb on + strandat 1548.672 kb on + strandat 1548.674 kb on + strandat 1548.697 kb on + strandat 1548.699 kb on + strandat 1548.699 kb on + strandat 1548.699 kb on + strandat 1548.699 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml
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1,546,712 + AO356_06995 0.74 -2.6
1,546,713 - AO356_06995 0.74 -0.1
1,546,714 + AO356_06995 0.75 -1.0
1,546,714 + +1.1
1,546,714 + AO356_06995 0.75 -1.0
1,546,714 + AO356_06995 0.75 -2.1
1,546,715 - AO356_06995 0.75 -1.5
1,546,715 - AO356_06995 0.75 -1.6
1,546,715 - AO356_06995 0.75 -1.5
1,546,715 - AO356_06995 0.75 -2.6
1,546,715 - AO356_06995 0.75 -2.4
1,546,715 - AO356_06995 0.75 -1.8
1,546,715 - AO356_06995 0.75 -3.2
1,546,719 - AO356_06995 0.76 -0.5
1,546,719 - AO356_06995 0.76 -1.5
1,546,864 + -1.5
1,546,896 + -1.5
1,547,193 + AO356_07000 0.45 -2.9
1,547,193 + AO356_07000 0.45 -1.2
1,547,193 + AO356_07000 0.45 -1.7
1,547,193 + AO356_07000 0.45 -1.4
1,547,193 + AO356_07000 0.45 -2.4
1,547,376 + AO356_07000 0.68 -0.2
1,547,376 + AO356_07000 0.68 -0.8
1,547,652 + -2.1
1,547,792 + AO356_07005 0.20 -2.1
1,547,792 + AO356_07005 0.20 -1.1
1,547,798 + AO356_07005 0.21 -1.9
1,547,936 + AO356_07005 0.38 -1.7
1,548,419 + +0.1
1,548,419 + -3.2
1,548,440 + +0.5
1,548,440 + -1.9
1,548,441 - -2.2
1,548,441 - -1.1
1,548,441 - -0.5
1,548,528 + -1.1
1,548,528 + -1.7
1,548,528 + -1.0
1,548,528 + -2.6
1,548,528 + -2.8
1,548,528 + -2.4
1,548,529 - +4.0
1,548,529 - +3.5
1,548,529 - +3.9
1,548,529 - +5.5
1,548,529 - +3.3
1,548,529 - +3.8
1,548,529 - +3.7
1,548,529 - +4.1
1,548,531 - +4.3
1,548,531 - +4.0
1,548,531 - +5.1
1,548,590 + -3.3
1,548,590 + -2.6
1,548,590 + -3.4
1,548,604 + -0.2
1,548,646 + -1.7
1,548,646 + -2.8
1,548,672 + -2.4
1,548,672 + -3.4
1,548,674 + -0.7
1,548,697 + -1.4
1,548,699 + -3.0
1,548,699 + -1.5
1,548,699 + -3.2
1,548,699 + -3.1

Or see this region's nucleotide sequence