Experiment: Benzalkonium Chloride 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_06995 and AO356_07000 overlap by 1 nucleotides AO356_07000 and AO356_07005 overlap by 1 nucleotides AO356_07005 and AO356_07010 are separated by 273 nucleotides
AO356_06995: AO356_06995 - outer membrane lipid asymmetry maintenance protein MlaD, at 1,546,365 to 1,546,832
_06995
AO356_07000: AO356_07000 - ABC transporter permease, at 1,546,832 to 1,547,629
_07000
AO356_07005: AO356_07005 - ABC transporter ATP-binding protein, at 1,547,629 to 1,548,438
_07005
AO356_07010: AO356_07010 - D-arabinose 5-phosphate isomerase, at 1,548,712 to 1,549,686
_07010
Position (kb)
1547
1548
1549 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1546.712 kb on + strand, within AO356_06995 at 1546.713 kb on - strand, within AO356_06995 at 1546.714 kb on + strand, within AO356_06995 at 1546.714 kb on + strand at 1546.714 kb on + strand, within AO356_06995 at 1546.714 kb on + strand, within AO356_06995 at 1546.715 kb on - strand, within AO356_06995 at 1546.715 kb on - strand, within AO356_06995 at 1546.715 kb on - strand, within AO356_06995 at 1546.715 kb on - strand, within AO356_06995 at 1546.715 kb on - strand, within AO356_06995 at 1546.715 kb on - strand, within AO356_06995 at 1546.715 kb on - strand, within AO356_06995 at 1546.719 kb on - strand, within AO356_06995 at 1546.719 kb on - strand, within AO356_06995 at 1546.864 kb on + strand at 1546.896 kb on + strand at 1547.193 kb on + strand, within AO356_07000 at 1547.193 kb on + strand, within AO356_07000 at 1547.193 kb on + strand, within AO356_07000 at 1547.193 kb on + strand, within AO356_07000 at 1547.193 kb on + strand, within AO356_07000 at 1547.376 kb on + strand, within AO356_07000 at 1547.376 kb on + strand, within AO356_07000 at 1547.652 kb on + strand at 1547.792 kb on + strand, within AO356_07005 at 1547.792 kb on + strand, within AO356_07005 at 1547.798 kb on + strand, within AO356_07005 at 1547.936 kb on + strand, within AO356_07005 at 1548.419 kb on + strand at 1548.419 kb on + strand at 1548.440 kb on + strand at 1548.440 kb on + strand at 1548.441 kb on - strand at 1548.441 kb on - strand at 1548.441 kb on - strand at 1548.528 kb on + strand at 1548.528 kb on + strand at 1548.528 kb on + strand at 1548.528 kb on + strand at 1548.528 kb on + strand at 1548.528 kb on + strand at 1548.529 kb on - strand at 1548.529 kb on - strand at 1548.529 kb on - strand at 1548.529 kb on - strand at 1548.529 kb on - strand at 1548.529 kb on - strand at 1548.529 kb on - strand at 1548.529 kb on - strand at 1548.531 kb on - strand at 1548.531 kb on - strand at 1548.531 kb on - strand at 1548.590 kb on + strand at 1548.590 kb on + strand at 1548.590 kb on + strand at 1548.604 kb on + strand at 1548.646 kb on + strand at 1548.646 kb on + strand at 1548.672 kb on + strand at 1548.672 kb on + strand at 1548.674 kb on + strand at 1548.697 kb on + strand at 1548.699 kb on + strand at 1548.699 kb on + strand at 1548.699 kb on + strand at 1548.699 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml remove 1,546,712 + AO356_06995 0.74 -2.6 1,546,713 - AO356_06995 0.74 -0.1 1,546,714 + AO356_06995 0.75 -1.0 1,546,714 + +1.1 1,546,714 + AO356_06995 0.75 -1.0 1,546,714 + AO356_06995 0.75 -2.1 1,546,715 - AO356_06995 0.75 -1.5 1,546,715 - AO356_06995 0.75 -1.6 1,546,715 - AO356_06995 0.75 -1.5 1,546,715 - AO356_06995 0.75 -2.6 1,546,715 - AO356_06995 0.75 -2.4 1,546,715 - AO356_06995 0.75 -1.8 1,546,715 - AO356_06995 0.75 -3.2 1,546,719 - AO356_06995 0.76 -0.5 1,546,719 - AO356_06995 0.76 -1.5 1,546,864 + -1.5 1,546,896 + -1.5 1,547,193 + AO356_07000 0.45 -2.9 1,547,193 + AO356_07000 0.45 -1.2 1,547,193 + AO356_07000 0.45 -1.7 1,547,193 + AO356_07000 0.45 -1.4 1,547,193 + AO356_07000 0.45 -2.4 1,547,376 + AO356_07000 0.68 -0.2 1,547,376 + AO356_07000 0.68 -0.8 1,547,652 + -2.1 1,547,792 + AO356_07005 0.20 -2.1 1,547,792 + AO356_07005 0.20 -1.1 1,547,798 + AO356_07005 0.21 -1.9 1,547,936 + AO356_07005 0.38 -1.7 1,548,419 + +0.1 1,548,419 + -3.2 1,548,440 + +0.5 1,548,440 + -1.9 1,548,441 - -2.2 1,548,441 - -1.1 1,548,441 - -0.5 1,548,528 + -1.1 1,548,528 + -1.7 1,548,528 + -1.0 1,548,528 + -2.6 1,548,528 + -2.8 1,548,528 + -2.4 1,548,529 - +4.0 1,548,529 - +3.5 1,548,529 - +3.9 1,548,529 - +5.5 1,548,529 - +3.3 1,548,529 - +3.8 1,548,529 - +3.7 1,548,529 - +4.1 1,548,531 - +4.3 1,548,531 - +4.0 1,548,531 - +5.1 1,548,590 + -3.3 1,548,590 + -2.6 1,548,590 + -3.4 1,548,604 + -0.2 1,548,646 + -1.7 1,548,646 + -2.8 1,548,672 + -2.4 1,548,672 + -3.4 1,548,674 + -0.7 1,548,697 + -1.4 1,548,699 + -3.0 1,548,699 + -1.5 1,548,699 + -3.2 1,548,699 + -3.1
Or see this region's nucleotide sequence