Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06285

Experiment: Benzalkonium Chloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06280 and AO356_06285 are separated by 184 nucleotidesAO356_06285 and AO356_06290 are separated by 215 nucleotides AO356_06280: AO356_06280 - hypothetical protein, at 1,391,976 to 1,392,686 _06280 AO356_06285: AO356_06285 - LysR family transcriptional regulator, at 1,392,871 to 1,393,785 _06285 AO356_06290: AO356_06290 - 1-pyrroline dehydrogenase, at 1,394,001 to 1,395,458 _06290 Position (kb) 1392 1393 1394Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1391.898 kb on + strandat 1391.898 kb on + strandat 1391.898 kb on + strandat 1391.898 kb on + strandat 1391.898 kb on + strandat 1391.898 kb on + strandat 1391.898 kb on + strandat 1391.899 kb on - strandat 1391.899 kb on - strandat 1391.899 kb on - strandat 1391.899 kb on - strandat 1391.899 kb on - strandat 1391.961 kb on + strandat 1391.961 kb on + strandat 1391.962 kb on - strandat 1391.977 kb on + strandat 1391.977 kb on + strandat 1392.062 kb on - strand, within AO356_06280at 1392.062 kb on - strand, within AO356_06280at 1392.112 kb on + strand, within AO356_06280at 1392.112 kb on + strand, within AO356_06280at 1392.112 kb on + strand, within AO356_06280at 1392.112 kb on + strand, within AO356_06280at 1392.112 kb on + strand, within AO356_06280at 1392.113 kb on - strand, within AO356_06280at 1392.320 kb on + strand, within AO356_06280at 1392.320 kb on + strand, within AO356_06280at 1392.409 kb on + strand, within AO356_06280at 1392.409 kb on + strand, within AO356_06280at 1392.418 kb on + strand, within AO356_06280at 1392.451 kb on + strand, within AO356_06280at 1392.715 kb on + strandat 1392.715 kb on + strandat 1392.715 kb on + strandat 1392.715 kb on + strandat 1392.716 kb on - strandat 1392.716 kb on - strandat 1392.716 kb on - strandat 1392.716 kb on - strandat 1392.716 kb on - strandat 1392.716 kb on - strandat 1392.729 kb on + strandat 1392.729 kb on + strandat 1392.730 kb on - strandat 1392.805 kb on + strandat 1392.805 kb on + strandat 1392.806 kb on - strandat 1392.826 kb on + strandat 1392.826 kb on + strandat 1392.826 kb on + strandat 1392.826 kb on + strandat 1392.826 kb on + strandat 1392.826 kb on + strandat 1392.826 kb on + strandat 1392.826 kb on + strandat 1392.827 kb on - strandat 1392.827 kb on - strandat 1392.827 kb on - strandat 1392.827 kb on - strandat 1392.827 kb on - strandat 1392.827 kb on - strandat 1392.827 kb on - strandat 1392.827 kb on - strandat 1392.865 kb on - strandat 1392.865 kb on - strandat 1392.865 kb on - strandat 1393.186 kb on + strand, within AO356_06285at 1393.186 kb on + strand, within AO356_06285at 1393.186 kb on + strand, within AO356_06285at 1393.187 kb on - strand, within AO356_06285at 1393.187 kb on - strand, within AO356_06285at 1393.264 kb on + strand, within AO356_06285at 1393.264 kb on + strand, within AO356_06285at 1393.265 kb on - strand, within AO356_06285at 1393.609 kb on + strand, within AO356_06285at 1393.609 kb on + strand, within AO356_06285at 1393.610 kb on - strand, within AO356_06285at 1393.682 kb on + strand, within AO356_06285at 1393.683 kb on - strand, within AO356_06285at 1393.779 kb on + strandat 1393.779 kb on + strandat 1393.779 kb on + strandat 1393.779 kb on + strandat 1393.779 kb on + strandat 1393.779 kb on + strandat 1393.780 kb on - strandat 1393.780 kb on - strandat 1393.780 kb on - strandat 1393.780 kb on - strandat 1393.836 kb on + strandat 1393.837 kb on - strandat 1393.837 kb on - strandat 1393.846 kb on - strandat 1393.846 kb on - strandat 1393.971 kb on + strandat 1393.971 kb on + strandat 1393.971 kb on + strandat 1393.972 kb on - strandat 1393.972 kb on - strandat 1393.972 kb on - strandat 1393.984 kb on + strandat 1393.984 kb on + strandat 1393.985 kb on - strandat 1393.985 kb on - strandat 1394.397 kb on + strand, within AO356_06290at 1394.398 kb on - strand, within AO356_06290at 1394.398 kb on - strand, within AO356_06290at 1394.410 kb on - strand, within AO356_06290at 1394.444 kb on - strand, within AO356_06290at 1394.470 kb on - strand, within AO356_06290at 1394.470 kb on - strand, within AO356_06290at 1394.522 kb on + strand, within AO356_06290at 1394.615 kb on + strand, within AO356_06290at 1394.616 kb on - strand, within AO356_06290at 1394.616 kb on - strand, within AO356_06290at 1394.616 kb on - strand, within AO356_06290

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml
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1,391,898 + +0.6
1,391,898 + +0.4
1,391,898 + -1.0
1,391,898 + -0.2
1,391,898 + +0.8
1,391,898 + -0.8
1,391,898 + +0.6
1,391,899 - +1.3
1,391,899 - +1.6
1,391,899 - +1.2
1,391,899 - +0.8
1,391,899 - -0.1
1,391,961 + +0.6
1,391,961 + -0.6
1,391,962 - +1.1
1,391,977 + -0.0
1,391,977 + -0.9
1,392,062 - AO356_06280 0.12 -0.6
1,392,062 - AO356_06280 0.12 +0.5
1,392,112 + AO356_06280 0.19 +0.8
1,392,112 + AO356_06280 0.19 +0.4
1,392,112 + AO356_06280 0.19 +0.5
1,392,112 + AO356_06280 0.19 +0.7
1,392,112 + AO356_06280 0.19 +0.9
1,392,113 - AO356_06280 0.19 +0.2
1,392,320 + AO356_06280 0.48 +0.8
1,392,320 + AO356_06280 0.48 +2.5
1,392,409 + AO356_06280 0.61 +0.3
1,392,409 + AO356_06280 0.61 -0.7
1,392,418 + AO356_06280 0.62 +0.2
1,392,451 + AO356_06280 0.67 -0.6
1,392,715 + -1.0
1,392,715 + +0.7
1,392,715 + +0.7
1,392,715 + -0.6
1,392,716 - -0.2
1,392,716 - -1.7
1,392,716 - +1.4
1,392,716 - -0.3
1,392,716 - +0.3
1,392,716 - -1.3
1,392,729 + -0.3
1,392,729 + +0.3
1,392,730 - -0.6
1,392,805 + +0.6
1,392,805 + +0.3
1,392,806 - -0.6
1,392,826 + -0.6
1,392,826 + +0.8
1,392,826 + +0.7
1,392,826 + +0.9
1,392,826 + -0.3
1,392,826 + -1.8
1,392,826 + +0.7
1,392,826 + +0.3
1,392,827 - -0.5
1,392,827 - +0.6
1,392,827 - -1.0
1,392,827 - -0.9
1,392,827 - -0.9
1,392,827 - +0.6
1,392,827 - +2.0
1,392,827 - -0.9
1,392,865 - -1.5
1,392,865 - -0.2
1,392,865 - +0.0
1,393,186 + AO356_06285 0.34 -0.7
1,393,186 + AO356_06285 0.34 -0.6
1,393,186 + AO356_06285 0.34 -1.0
1,393,187 - AO356_06285 0.35 -0.2
1,393,187 - AO356_06285 0.35 -1.3
1,393,264 + AO356_06285 0.43 -0.3
1,393,264 + AO356_06285 0.43 -0.5
1,393,265 - AO356_06285 0.43 -0.4
1,393,609 + AO356_06285 0.81 +0.6
1,393,609 + AO356_06285 0.81 -1.8
1,393,610 - AO356_06285 0.81 -2.0
1,393,682 + AO356_06285 0.89 +0.8
1,393,683 - AO356_06285 0.89 +1.1
1,393,779 + -1.1
1,393,779 + +0.2
1,393,779 + +0.8
1,393,779 + -1.3
1,393,779 + +0.4
1,393,779 + -0.4
1,393,780 - +0.1
1,393,780 - -0.6
1,393,780 - -0.6
1,393,780 - -1.0
1,393,836 + -0.3
1,393,837 - -1.0
1,393,837 - +0.6
1,393,846 - -0.2
1,393,846 - +1.7
1,393,971 + -0.4
1,393,971 + -0.2
1,393,971 + -0.3
1,393,972 - -0.1
1,393,972 - -0.4
1,393,972 - -0.9
1,393,984 + +0.3
1,393,984 + -0.6
1,393,985 - +0.2
1,393,985 - -0.4
1,394,397 + AO356_06290 0.27 +0.8
1,394,398 - AO356_06290 0.27 -1.0
1,394,398 - AO356_06290 0.27 -1.5
1,394,410 - AO356_06290 0.28 -0.5
1,394,444 - AO356_06290 0.30 +0.8
1,394,470 - AO356_06290 0.32 -0.1
1,394,470 - AO356_06290 0.32 +2.6
1,394,522 + AO356_06290 0.36 -0.8
1,394,615 + AO356_06290 0.42 -1.5
1,394,616 - AO356_06290 0.42 -3.1
1,394,616 - AO356_06290 0.42 -0.4
1,394,616 - AO356_06290 0.42 -0.8

Or see this region's nucleotide sequence