Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03275

Experiment: Benzalkonium Chloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03265 and AO356_03270 are separated by 230 nucleotidesAO356_03270 and AO356_03275 are separated by 11 nucleotidesAO356_03275 and AO356_03280 are separated by 233 nucleotides AO356_03265: AO356_03265 - chemotaxis protein, at 724,012 to 725,493 _03265 AO356_03270: AO356_03270 - terminase, at 725,724 to 726,098 _03270 AO356_03275: AO356_03275 - acyl-CoA thioesterase, at 726,110 to 726,907 _03275 AO356_03280: AO356_03280 - metal-chelation protein CHAD, at 727,141 to 727,902 _03280 Position (kb) 726 727Strain fitness (log2 ratio) -3 -2 -1 0 1at 725.126 kb on + strand, within AO356_03265at 725.127 kb on - strand, within AO356_03265at 725.602 kb on + strandat 725.621 kb on - strandat 725.621 kb on - strandat 725.682 kb on + strandat 725.682 kb on + strandat 725.682 kb on + strandat 725.682 kb on + strandat 725.683 kb on - strandat 725.683 kb on - strandat 725.683 kb on - strandat 725.683 kb on - strandat 725.683 kb on - strandat 725.683 kb on - strandat 725.695 kb on + strandat 725.695 kb on + strandat 725.695 kb on + strandat 725.695 kb on + strandat 725.695 kb on + strandat 725.696 kb on - strandat 725.696 kb on - strandat 725.696 kb on - strandat 725.696 kb on - strandat 725.696 kb on - strandat 725.696 kb on - strandat 725.696 kb on - strandat 725.717 kb on + strandat 725.717 kb on + strandat 725.718 kb on - strandat 725.718 kb on - strandat 725.718 kb on - strandat 725.718 kb on - strandat 725.718 kb on - strandat 725.769 kb on + strand, within AO356_03270at 725.770 kb on - strand, within AO356_03270at 725.863 kb on + strand, within AO356_03270at 725.863 kb on + strand, within AO356_03270at 725.864 kb on - strand, within AO356_03270at 726.089 kb on + strandat 726.090 kb on - strandat 726.090 kb on - strandat 726.090 kb on - strandat 726.225 kb on + strand, within AO356_03275at 726.225 kb on + strand, within AO356_03275at 726.225 kb on + strand, within AO356_03275at 726.225 kb on + strand, within AO356_03275at 726.226 kb on - strand, within AO356_03275at 726.226 kb on - strand, within AO356_03275at 726.433 kb on + strand, within AO356_03275at 726.434 kb on - strand, within AO356_03275at 726.513 kb on + strand, within AO356_03275at 726.513 kb on + strand, within AO356_03275at 726.514 kb on - strand, within AO356_03275at 726.736 kb on + strand, within AO356_03275at 726.737 kb on - strand, within AO356_03275at 726.737 kb on - strand, within AO356_03275at 726.784 kb on + strand, within AO356_03275at 726.784 kb on + strand, within AO356_03275at 726.785 kb on - strand, within AO356_03275at 726.785 kb on - strand, within AO356_03275at 726.792 kb on + strand, within AO356_03275at 726.792 kb on + strand, within AO356_03275at 726.792 kb on + strand, within AO356_03275at 726.793 kb on - strand, within AO356_03275at 726.793 kb on - strand, within AO356_03275at 727.064 kb on + strandat 727.064 kb on + strandat 727.064 kb on + strandat 727.064 kb on + strandat 727.065 kb on - strandat 727.065 kb on - strandat 727.079 kb on - strandat 727.079 kb on - strandat 727.079 kb on - strandat 727.131 kb on + strandat 727.131 kb on + strandat 727.131 kb on + strandat 727.131 kb on + strandat 727.131 kb on + strandat 727.132 kb on - strandat 727.365 kb on - strand, within AO356_03280at 727.365 kb on - strand, within AO356_03280at 727.615 kb on + strand, within AO356_03280at 727.615 kb on + strand, within AO356_03280at 727.615 kb on + strand, within AO356_03280at 727.616 kb on - strand, within AO356_03280at 727.616 kb on - strand, within AO356_03280at 727.616 kb on - strand, within AO356_03280at 727.661 kb on + strand, within AO356_03280at 727.661 kb on + strand, within AO356_03280at 727.661 kb on + strand, within AO356_03280at 727.661 kb on + strand, within AO356_03280at 727.662 kb on - strand, within AO356_03280at 727.662 kb on - strand, within AO356_03280at 727.662 kb on - strand, within AO356_03280

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml
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725,126 + AO356_03265 0.75 -0.8
725,127 - AO356_03265 0.75 +1.2
725,602 + -1.0
725,621 - +0.5
725,621 - +0.0
725,682 + +0.3
725,682 + +1.4
725,682 + -0.5
725,682 + -2.1
725,683 - +1.2
725,683 - +0.2
725,683 - -1.3
725,683 - -0.7
725,683 - -0.7
725,683 - +1.5
725,695 + -0.2
725,695 + -1.5
725,695 + +0.5
725,695 + -1.0
725,695 + +1.1
725,696 - +0.1
725,696 - -0.4
725,696 - -0.6
725,696 - -1.2
725,696 - +0.7
725,696 - +0.6
725,696 - -0.1
725,717 + -1.4
725,717 + -1.5
725,718 - +1.0
725,718 - -2.2
725,718 - +1.2
725,718 - -0.6
725,718 - +0.3
725,769 + AO356_03270 0.12 -1.3
725,770 - AO356_03270 0.12 -0.1
725,863 + AO356_03270 0.37 +0.5
725,863 + AO356_03270 0.37 +1.4
725,864 - AO356_03270 0.37 -0.4
726,089 + -0.7
726,090 - -0.9
726,090 - +0.6
726,090 - -0.9
726,225 + AO356_03275 0.14 -0.6
726,225 + AO356_03275 0.14 +1.7
726,225 + AO356_03275 0.14 +0.8
726,225 + AO356_03275 0.14 -3.0
726,226 - AO356_03275 0.15 -0.4
726,226 - AO356_03275 0.15 +1.3
726,433 + AO356_03275 0.40 +0.8
726,434 - AO356_03275 0.41 -0.4
726,513 + AO356_03275 0.51 +0.2
726,513 + AO356_03275 0.51 +0.0
726,514 - AO356_03275 0.51 -0.3
726,736 + AO356_03275 0.78 +0.4
726,737 - AO356_03275 0.79 +0.4
726,737 - AO356_03275 0.79 +1.2
726,784 + AO356_03275 0.84 +0.6
726,784 + AO356_03275 0.84 +1.6
726,785 - AO356_03275 0.85 +1.5
726,785 - AO356_03275 0.85 +0.5
726,792 + AO356_03275 0.85 +0.3
726,792 + AO356_03275 0.85 +0.7
726,792 + AO356_03275 0.85 -1.6
726,793 - AO356_03275 0.86 -0.7
726,793 - AO356_03275 0.86 -0.0
727,064 + +0.6
727,064 + -0.3
727,064 + +1.6
727,064 + -0.4
727,065 - +0.5
727,065 - -0.7
727,079 - -1.9
727,079 - -0.6
727,079 - +0.6
727,131 + -0.9
727,131 + +0.3
727,131 + -0.5
727,131 + +0.7
727,131 + +0.2
727,132 - +0.1
727,365 - AO356_03280 0.29 -0.5
727,365 - AO356_03280 0.29 +0.1
727,615 + AO356_03280 0.62 +0.6
727,615 + AO356_03280 0.62 -0.3
727,615 + AO356_03280 0.62 +0.0
727,616 - AO356_03280 0.62 +0.9
727,616 - AO356_03280 0.62 +0.3
727,616 - AO356_03280 0.62 -0.2
727,661 + AO356_03280 0.68 -1.0
727,661 + AO356_03280 0.68 +1.1
727,661 + AO356_03280 0.68 +0.8
727,661 + AO356_03280 0.68 +1.3
727,662 - AO356_03280 0.68 +1.2
727,662 - AO356_03280 0.68 -0.6
727,662 - AO356_03280 0.68 +0.5

Or see this region's nucleotide sequence