Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03260

Experiment: Benzalkonium Chloride 0.016 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_03255 and AO356_03260 are separated by 235 nucleotidesAO356_03260 and AO356_03265 are separated by 245 nucleotides AO356_03255: AO356_03255 - glycosylase, at 721,303 to 722,724 _03255 AO356_03260: AO356_03260 - hydrolase TatD, at 722,960 to 723,766 _03260 AO356_03265: AO356_03265 - chemotaxis protein, at 724,012 to 725,493 _03265 Position (kb) 722 723 724Strain fitness (log2 ratio) -2 -1 0 1 2at 721.983 kb on - strand, within AO356_03255at 722.008 kb on + strand, within AO356_03255at 722.008 kb on + strand, within AO356_03255at 722.008 kb on + strand, within AO356_03255at 722.009 kb on - strand, within AO356_03255at 722.133 kb on + strand, within AO356_03255at 722.134 kb on - strand, within AO356_03255at 722.270 kb on + strand, within AO356_03255at 722.317 kb on - strand, within AO356_03255at 722.451 kb on + strand, within AO356_03255at 722.452 kb on - strand, within AO356_03255at 722.452 kb on - strand, within AO356_03255at 722.452 kb on - strand, within AO356_03255at 722.486 kb on + strand, within AO356_03255at 722.486 kb on + strand, within AO356_03255at 722.486 kb on + strand, within AO356_03255at 722.487 kb on - strand, within AO356_03255at 722.487 kb on - strand, within AO356_03255at 722.487 kb on - strand, within AO356_03255at 722.701 kb on + strandat 722.701 kb on + strandat 722.701 kb on + strandat 722.701 kb on + strandat 722.702 kb on - strandat 722.702 kb on - strandat 722.702 kb on - strandat 722.707 kb on + strandat 722.707 kb on + strandat 722.707 kb on + strandat 722.707 kb on + strandat 722.707 kb on + strandat 722.707 kb on + strandat 722.707 kb on + strandat 722.708 kb on - strandat 722.708 kb on - strandat 722.708 kb on - strandat 722.708 kb on - strandat 722.708 kb on - strandat 722.708 kb on - strandat 722.840 kb on + strandat 722.842 kb on + strandat 722.842 kb on + strandat 722.843 kb on - strandat 722.851 kb on + strandat 722.851 kb on + strandat 722.852 kb on - strandat 722.852 kb on - strandat 722.852 kb on - strandat 722.852 kb on - strandat 722.852 kb on - strandat 722.891 kb on + strandat 722.892 kb on - strandat 722.927 kb on + strandat 722.953 kb on + strandat 722.954 kb on - strandat 723.038 kb on + strandat 723.038 kb on + strandat 723.038 kb on + strandat 723.039 kb on - strandat 723.342 kb on + strand, within AO356_03260at 723.467 kb on + strand, within AO356_03260at 723.487 kb on + strand, within AO356_03260at 723.487 kb on + strand, within AO356_03260at 723.487 kb on + strand, within AO356_03260at 723.488 kb on - strand, within AO356_03260at 723.488 kb on - strand, within AO356_03260at 723.493 kb on + strand, within AO356_03260at 723.494 kb on - strand, within AO356_03260at 723.494 kb on - strand, within AO356_03260at 723.494 kb on - strand, within AO356_03260at 723.494 kb on - strand, within AO356_03260at 723.555 kb on + strand, within AO356_03260at 723.594 kb on - strand, within AO356_03260at 723.607 kb on + strand, within AO356_03260at 723.650 kb on + strand, within AO356_03260at 723.651 kb on - strand, within AO356_03260at 723.812 kb on + strandat 724.026 kb on + strandat 724.027 kb on - strandat 724.032 kb on + strandat 724.032 kb on + strandat 724.032 kb on + strandat 724.032 kb on + strandat 724.032 kb on + strandat 724.033 kb on - strandat 724.033 kb on - strandat 724.033 kb on - strandat 724.046 kb on - strandat 724.046 kb on - strandat 724.077 kb on + strandat 724.102 kb on + strandat 724.400 kb on + strand, within AO356_03265at 724.400 kb on + strand, within AO356_03265at 724.400 kb on + strand, within AO356_03265at 724.400 kb on + strand, within AO356_03265at 724.401 kb on - strand, within AO356_03265at 724.401 kb on - strand, within AO356_03265at 724.401 kb on - strand, within AO356_03265at 724.401 kb on - strand, within AO356_03265at 724.401 kb on - strand, within AO356_03265at 724.401 kb on - strand, within AO356_03265at 724.401 kb on - strand, within AO356_03265at 724.401 kb on - strand, within AO356_03265at 724.401 kb on - strand, within AO356_03265at 724.438 kb on + strand, within AO356_03265

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml
remove
721,983 - AO356_03255 0.48 -2.6
722,008 + AO356_03255 0.50 -1.2
722,008 + AO356_03255 0.50 -2.7
722,008 + AO356_03255 0.50 -0.7
722,009 - AO356_03255 0.50 +0.1
722,133 + AO356_03255 0.58 -0.8
722,134 - AO356_03255 0.58 -0.3
722,270 + AO356_03255 0.68 -2.2
722,317 - AO356_03255 0.71 -0.1
722,451 + AO356_03255 0.81 -2.2
722,452 - AO356_03255 0.81 -0.6
722,452 - AO356_03255 0.81 -1.4
722,452 - AO356_03255 0.81 +0.2
722,486 + AO356_03255 0.83 +0.7
722,486 + AO356_03255 0.83 -0.7
722,486 + AO356_03255 0.83 -0.7
722,487 - AO356_03255 0.83 -1.2
722,487 - AO356_03255 0.83 -0.1
722,487 - AO356_03255 0.83 -0.7
722,701 + +0.0
722,701 + +0.1
722,701 + -0.2
722,701 + +0.2
722,702 - +0.1
722,702 - +0.1
722,702 - -0.8
722,707 + -1.0
722,707 + -1.1
722,707 + +0.3
722,707 + -1.0
722,707 + +1.2
722,707 + -1.4
722,707 + -0.3
722,708 - -0.1
722,708 - -1.9
722,708 - +0.3
722,708 - +1.1
722,708 - +1.0
722,708 - +0.8
722,840 + +1.1
722,842 + -0.5
722,842 + -0.3
722,843 - +0.2
722,851 + +0.4
722,851 + -1.5
722,852 - +0.4
722,852 - +0.8
722,852 - +1.2
722,852 - +0.4
722,852 - -0.2
722,891 + -0.2
722,892 - +1.3
722,927 + -0.2
722,953 + -0.7
722,954 - +1.2
723,038 + -0.3
723,038 + +0.3
723,038 + +0.8
723,039 - -0.4
723,342 + AO356_03260 0.47 -1.9
723,467 + AO356_03260 0.63 +0.2
723,487 + AO356_03260 0.65 -0.6
723,487 + AO356_03260 0.65 -1.4
723,487 + AO356_03260 0.65 +0.5
723,488 - AO356_03260 0.65 -0.0
723,488 - AO356_03260 0.65 +0.3
723,493 + AO356_03260 0.66 -0.4
723,494 - AO356_03260 0.66 +0.8
723,494 - AO356_03260 0.66 +1.1
723,494 - AO356_03260 0.66 +0.9
723,494 - AO356_03260 0.66 +0.5
723,555 + AO356_03260 0.74 -0.7
723,594 - AO356_03260 0.79 +0.4
723,607 + AO356_03260 0.80 +0.2
723,650 + AO356_03260 0.86 -0.3
723,651 - AO356_03260 0.86 -0.7
723,812 + -0.3
724,026 + -0.8
724,027 - +1.0
724,032 + -0.0
724,032 + -0.4
724,032 + +0.3
724,032 + -0.1
724,032 + -0.8
724,033 - +1.3
724,033 - +1.2
724,033 - -0.7
724,046 - -0.6
724,046 - +0.2
724,077 + -0.2
724,102 + -1.2
724,400 + AO356_03265 0.26 +0.1
724,400 + AO356_03265 0.26 -1.0
724,400 + AO356_03265 0.26 +0.9
724,400 + AO356_03265 0.26 -1.1
724,401 - AO356_03265 0.26 +1.1
724,401 - AO356_03265 0.26 +0.0
724,401 - AO356_03265 0.26 -0.1
724,401 - AO356_03265 0.26 +0.3
724,401 - AO356_03265 0.26 +1.5
724,401 - AO356_03265 0.26 -0.4
724,401 - AO356_03265 0.26 +0.4
724,401 - AO356_03265 0.26 +0.1
724,401 - AO356_03265 0.26 +0.0
724,438 + AO356_03265 0.29 +2.6

Or see this region's nucleotide sequence