Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02205

Experiment: Benzalkonium Chloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02195 and AO356_02200 are separated by 109 nucleotidesAO356_02200 and AO356_02205 are separated by 184 nucleotidesAO356_02205 and AO356_02210 are separated by 61 nucleotidesAO356_02210 and AO356_02215 are separated by 152 nucleotides AO356_02195: AO356_02195 - phosphatase, at 472,312 to 472,932 _02195 AO356_02200: AO356_02200 - chromosome partitioning protein ParA, at 473,042 to 473,305 _02200 AO356_02205: AO356_02205 - NADPH-dependent 7-cyano-7-deazaguanine reductase, at 473,490 to 474,320 _02205 AO356_02210: AO356_02210 - copper-binding protein, at 474,382 to 474,903 _02210 AO356_02215: AO356_02215 - transcriptional regulator, at 475,056 to 475,736 _02215 Position (kb) 473 474 475Strain fitness (log2 ratio) -3 -2 -1 0 1at 472.491 kb on + strand, within AO356_02195at 472.595 kb on - strand, within AO356_02195at 472.718 kb on + strand, within AO356_02195at 472.718 kb on + strand, within AO356_02195at 472.719 kb on - strand, within AO356_02195at 472.915 kb on - strandat 472.915 kb on - strandat 472.965 kb on - strandat 472.965 kb on - strandat 472.965 kb on - strandat 472.970 kb on + strandat 472.970 kb on + strandat 473.021 kb on - strandat 473.027 kb on - strandat 473.035 kb on + strandat 473.331 kb on + strandat 473.331 kb on + strandat 473.331 kb on + strandat 473.331 kb on + strandat 473.332 kb on - strandat 473.332 kb on - strandat 473.332 kb on - strandat 473.335 kb on + strandat 473.336 kb on - strandat 473.336 kb on - strandat 473.336 kb on - strandat 473.336 kb on - strandat 473.348 kb on + strandat 473.349 kb on - strandat 473.407 kb on + strandat 473.407 kb on + strandat 473.408 kb on - strandat 473.408 kb on - strandat 473.408 kb on - strandat 473.491 kb on + strandat 473.491 kb on + strandat 473.571 kb on + strandat 473.571 kb on + strandat 473.571 kb on + strandat 473.571 kb on + strandat 473.572 kb on - strandat 473.572 kb on - strandat 473.572 kb on - strandat 473.584 kb on + strand, within AO356_02205at 473.584 kb on + strand, within AO356_02205at 473.686 kb on + strand, within AO356_02205at 473.687 kb on - strand, within AO356_02205at 473.687 kb on - strand, within AO356_02205at 473.857 kb on + strand, within AO356_02205at 474.262 kb on + strandat 474.263 kb on - strandat 474.263 kb on - strandat 474.275 kb on - strandat 474.275 kb on - strandat 474.353 kb on + strandat 474.354 kb on - strandat 474.354 kb on - strandat 474.436 kb on - strand, within AO356_02210at 474.436 kb on - strand, within AO356_02210at 474.693 kb on + strand, within AO356_02210at 474.732 kb on + strand, within AO356_02210at 474.909 kb on + strandat 474.978 kb on + strandat 475.019 kb on + strandat 475.019 kb on + strandat 475.019 kb on + strandat 475.019 kb on + strandat 475.020 kb on - strandat 475.020 kb on - strandat 475.021 kb on + strandat 475.021 kb on + strandat 475.022 kb on - strandat 475.098 kb on + strandat 475.098 kb on + strandat 475.099 kb on - strandat 475.099 kb on - strandat 475.188 kb on + strand, within AO356_02215at 475.188 kb on + strand, within AO356_02215at 475.189 kb on - strand, within AO356_02215

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml
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472,491 + AO356_02195 0.29 +1.4
472,595 - AO356_02195 0.46 +0.5
472,718 + AO356_02195 0.65 -0.6
472,718 + AO356_02195 0.65 -0.8
472,719 - AO356_02195 0.66 +0.2
472,915 - +0.4
472,915 - -0.9
472,965 - -0.3
472,965 - -0.2
472,965 - -0.4
472,970 + +0.3
472,970 + -0.3
473,021 - +0.1
473,027 - +0.0
473,035 + -0.7
473,331 + +0.1
473,331 + +0.1
473,331 + -2.1
473,331 + +0.5
473,332 - +0.3
473,332 - -1.8
473,332 - +1.3
473,335 + -2.6
473,336 - +0.6
473,336 - -2.4
473,336 - -0.5
473,336 - +0.6
473,348 + -0.1
473,349 - -0.6
473,407 + -0.7
473,407 + +0.6
473,408 - +0.9
473,408 - -0.0
473,408 - -0.1
473,491 + -2.8
473,491 + +0.9
473,571 + -1.7
473,571 + -0.4
473,571 + -1.1
473,571 + +0.3
473,572 - -1.8
473,572 - -0.3
473,572 - -2.1
473,584 + AO356_02205 0.11 +0.0
473,584 + AO356_02205 0.11 -0.9
473,686 + AO356_02205 0.24 -1.7
473,687 - AO356_02205 0.24 +0.2
473,687 - AO356_02205 0.24 +0.1
473,857 + AO356_02205 0.44 -1.4
474,262 + -0.3
474,263 - +0.7
474,263 - +0.3
474,275 - +0.7
474,275 - -0.1
474,353 + -0.7
474,354 - -0.0
474,354 - -0.8
474,436 - AO356_02210 0.10 +0.0
474,436 - AO356_02210 0.10 +1.3
474,693 + AO356_02210 0.60 -0.3
474,732 + AO356_02210 0.67 +1.1
474,909 + -0.0
474,978 + +0.2
475,019 + +0.3
475,019 + +0.2
475,019 + -0.9
475,019 + +0.4
475,020 - +0.5
475,020 - -0.1
475,021 + -1.5
475,021 + +0.6
475,022 - -0.0
475,098 + -0.6
475,098 + +0.5
475,099 - -0.6
475,099 - +0.1
475,188 + AO356_02215 0.19 -0.2
475,188 + AO356_02215 0.19 -1.1
475,189 - AO356_02215 0.20 -1.9

Or see this region's nucleotide sequence