Experiment: Benzalkonium Chloride 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01975 and AO356_01980 are separated by 3 nucleotides AO356_01980 and AO356_01985 are separated by 104 nucleotides AO356_01985 and AO356_01990 overlap by 1 nucleotides AO356_01990 and AO356_01995 are separated by 54 nucleotides AO356_01995 and AO356_02000 overlap by 4 nucleotides
AO356_01975: AO356_01975 - capsid protein, at 438,962 to 439,981
_01975
AO356_01980: AO356_01980 - terminase, at 439,985 to 440,686
_01980
AO356_01985: AO356_01985 - head completion/stabilization protein, at 440,791 to 441,252
_01985
AO356_01990: AO356_01990 - phage tail protein, at 441,252 to 441,464
_01990
AO356_01995: AO356_01995 - holin, at 441,519 to 441,833
_01995
AO356_02000: AO356_02000 - peptidoglycan-binding protein, at 441,830 to 442,672
_02000
Position (kb) 440
441
442 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 439.832 kb on + strand, within AO356_01975 at 439.832 kb on + strand, within AO356_01975 at 439.833 kb on - strand, within AO356_01975 at 439.833 kb on - strand, within AO356_01975 at 439.859 kb on + strand, within AO356_01975 at 439.860 kb on - strand, within AO356_01975 at 439.860 kb on - strand, within AO356_01975 at 439.860 kb on - strand, within AO356_01975 at 439.899 kb on - strand at 439.919 kb on + strand at 439.919 kb on + strand at 439.920 kb on - strand at 439.935 kb on - strand at 440.084 kb on + strand, within AO356_01980 at 440.085 kb on - strand, within AO356_01980 at 440.186 kb on + strand, within AO356_01980 at 440.186 kb on + strand, within AO356_01980 at 440.186 kb on + strand, within AO356_01980 at 440.187 kb on - strand, within AO356_01980 at 440.187 kb on - strand, within AO356_01980 at 440.195 kb on + strand, within AO356_01980 at 440.195 kb on + strand, within AO356_01980 at 440.196 kb on - strand, within AO356_01980 at 440.196 kb on - strand, within AO356_01980 at 440.309 kb on + strand, within AO356_01980 at 440.309 kb on + strand, within AO356_01980 at 440.310 kb on - strand, within AO356_01980 at 440.310 kb on - strand, within AO356_01980 at 440.790 kb on + strand at 440.790 kb on + strand at 440.790 kb on + strand at 440.791 kb on - strand at 440.791 kb on - strand at 440.791 kb on - strand at 440.805 kb on - strand at 440.832 kb on + strand at 440.833 kb on - strand at 441.121 kb on + strand, within AO356_01985 at 441.122 kb on - strand, within AO356_01985 at 441.289 kb on + strand, within AO356_01990 at 441.290 kb on - strand, within AO356_01990 at 441.290 kb on - strand, within AO356_01990 at 441.290 kb on - strand, within AO356_01990 at 441.403 kb on + strand, within AO356_01990 at 441.404 kb on - strand, within AO356_01990 at 441.454 kb on + strand at 441.454 kb on + strand at 441.455 kb on - strand at 441.585 kb on + strand, within AO356_01995 at 441.585 kb on + strand, within AO356_01995 at 441.586 kb on - strand, within AO356_01995 at 441.586 kb on - strand, within AO356_01995 at 441.586 kb on - strand, within AO356_01995 at 441.630 kb on + strand, within AO356_01995 at 441.631 kb on - strand, within AO356_01995 at 441.631 kb on - strand, within AO356_01995 at 441.631 kb on - strand, within AO356_01995 at 441.631 kb on - strand, within AO356_01995 at 441.685 kb on + strand, within AO356_01995 at 441.718 kb on + strand, within AO356_01995 at 441.718 kb on + strand, within AO356_01995 at 441.719 kb on - strand, within AO356_01995 at 441.719 kb on - strand, within AO356_01995 at 441.719 kb on - strand, within AO356_01995 at 441.719 kb on - strand, within AO356_01995 at 441.719 kb on - strand, within AO356_01995 at 441.719 kb on - strand, within AO356_01995 at 441.820 kb on + strand at 441.820 kb on + strand at 441.821 kb on - strand at 441.821 kb on - strand at 441.821 kb on - strand at 441.829 kb on + strand at 441.829 kb on + strand at 441.830 kb on - strand at 441.830 kb on - strand at 441.830 kb on - strand at 441.830 kb on - strand at 441.830 kb on - strand at 441.830 kb on - strand at 441.830 kb on - strand at 441.926 kb on + strand, within AO356_02000 at 441.926 kb on + strand, within AO356_02000 at 441.927 kb on - strand, within AO356_02000 at 441.927 kb on - strand, within AO356_02000 at 441.959 kb on + strand, within AO356_02000 at 441.959 kb on + strand, within AO356_02000 at 441.960 kb on - strand, within AO356_02000 at 442.090 kb on - strand, within AO356_02000 at 442.106 kb on + strand, within AO356_02000 at 442.107 kb on - strand, within AO356_02000 at 442.190 kb on + strand, within AO356_02000 at 442.190 kb on + strand, within AO356_02000
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml remove 439,832 + AO356_01975 0.85 -1.0 439,832 + AO356_01975 0.85 -0.7 439,833 - AO356_01975 0.85 -0.1 439,833 - AO356_01975 0.85 -0.4 439,859 + AO356_01975 0.88 -0.1 439,860 - AO356_01975 0.88 +0.5 439,860 - AO356_01975 0.88 -0.1 439,860 - AO356_01975 0.88 +0.7 439,899 - +0.7 439,919 + +0.3 439,919 + -0.5 439,920 - -1.5 439,935 - +1.0 440,084 + AO356_01980 0.14 +0.1 440,085 - AO356_01980 0.14 +0.3 440,186 + AO356_01980 0.29 +0.6 440,186 + AO356_01980 0.29 -0.5 440,186 + AO356_01980 0.29 +1.0 440,187 - AO356_01980 0.29 +0.0 440,187 - AO356_01980 0.29 +0.9 440,195 + AO356_01980 0.30 -0.9 440,195 + AO356_01980 0.30 +0.9 440,196 - AO356_01980 0.30 +0.1 440,196 - AO356_01980 0.30 +0.7 440,309 + AO356_01980 0.46 +0.3 440,309 + AO356_01980 0.46 -0.3 440,310 - AO356_01980 0.46 +0.1 440,310 - AO356_01980 0.46 -0.7 440,790 + +0.2 440,790 + -1.3 440,790 + -0.9 440,791 - +0.6 440,791 - +1.9 440,791 - +0.7 440,805 - -0.6 440,832 + +0.6 440,833 - +0.1 441,121 + AO356_01985 0.71 -1.1 441,122 - AO356_01985 0.72 -1.1 441,289 + AO356_01990 0.17 +0.5 441,290 - AO356_01990 0.18 +0.2 441,290 - AO356_01990 0.18 -1.4 441,290 - AO356_01990 0.18 -0.8 441,403 + AO356_01990 0.71 +1.2 441,404 - AO356_01990 0.71 +1.0 441,454 + -1.4 441,454 + +0.4 441,455 - -0.6 441,585 + AO356_01995 0.21 -0.5 441,585 + AO356_01995 0.21 -2.8 441,586 - AO356_01995 0.21 -0.0 441,586 - AO356_01995 0.21 +0.4 441,586 - AO356_01995 0.21 +0.6 441,630 + AO356_01995 0.35 -0.3 441,631 - AO356_01995 0.36 -0.4 441,631 - AO356_01995 0.36 -2.5 441,631 - AO356_01995 0.36 +0.2 441,631 - AO356_01995 0.36 +0.9 441,685 + AO356_01995 0.53 +0.7 441,718 + AO356_01995 0.63 +0.7 441,718 + AO356_01995 0.63 -1.1 441,719 - AO356_01995 0.63 +1.1 441,719 - AO356_01995 0.63 +1.2 441,719 - AO356_01995 0.63 -1.1 441,719 - AO356_01995 0.63 -1.4 441,719 - AO356_01995 0.63 +1.1 441,719 - AO356_01995 0.63 -0.3 441,820 + -0.2 441,820 + +0.9 441,821 - -0.1 441,821 - +1.2 441,821 - -0.4 441,829 + -0.3 441,829 + -0.4 441,830 - +0.1 441,830 - +0.3 441,830 - -0.0 441,830 - +0.7 441,830 - +0.7 441,830 - -0.5 441,830 - -0.1 441,926 + AO356_02000 0.11 +0.7 441,926 + AO356_02000 0.11 -2.3 441,927 - AO356_02000 0.12 -1.1 441,927 - AO356_02000 0.12 -0.4 441,959 + AO356_02000 0.15 +0.4 441,959 + AO356_02000 0.15 +0.3 441,960 - AO356_02000 0.15 +0.6 442,090 - AO356_02000 0.31 +0.5 442,106 + AO356_02000 0.33 -1.3 442,107 - AO356_02000 0.33 -1.6 442,190 + AO356_02000 0.43 -1.4 442,190 + AO356_02000 0.43 +0.7
Or see this region's nucleotide sequence