Experiment: Benzalkonium Chloride 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00635 and AO356_00640 are separated by 163 nucleotides AO356_00640 and AO356_00645 are separated by 144 nucleotides AO356_00645 and AO356_00650 are separated by 54 nucleotides
AO356_00635: AO356_00635 - phenylacetic acid degradation protein, at 136,446 to 136,886
_00635
AO356_00640: AO356_00640 - TetR family transcriptional regulator, at 137,050 to 137,670
_00640
AO356_00645: AO356_00645 - phenol degradation protein meta, at 137,815 to 138,807
_00645
AO356_00650: AO356_00650 - MFS transporter, at 138,862 to 140,043
_00650
Position (kb) 137
138
139 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 136.833 kb on - strand, within AO356_00635 at 136.833 kb on - strand, within AO356_00635 at 136.864 kb on + strand at 136.864 kb on + strand at 136.864 kb on + strand at 136.864 kb on + strand at 136.864 kb on + strand at 136.865 kb on - strand at 136.931 kb on - strand at 137.019 kb on + strand at 137.020 kb on - strand at 137.020 kb on - strand at 137.020 kb on - strand at 137.153 kb on + strand, within AO356_00640 at 137.154 kb on - strand, within AO356_00640 at 137.154 kb on - strand, within AO356_00640 at 137.212 kb on + strand, within AO356_00640 at 137.213 kb on - strand, within AO356_00640 at 137.213 kb on - strand, within AO356_00640 at 137.213 kb on - strand, within AO356_00640 at 137.254 kb on + strand, within AO356_00640 at 137.255 kb on - strand, within AO356_00640 at 137.255 kb on - strand, within AO356_00640 at 137.296 kb on + strand, within AO356_00640 at 137.296 kb on + strand, within AO356_00640 at 137.296 kb on + strand, within AO356_00640 at 137.297 kb on - strand, within AO356_00640 at 137.297 kb on - strand, within AO356_00640 at 137.350 kb on + strand, within AO356_00640 at 137.350 kb on + strand, within AO356_00640 at 137.618 kb on - strand at 137.756 kb on - strand at 137.990 kb on - strand, within AO356_00645 at 138.097 kb on + strand, within AO356_00645 at 138.097 kb on + strand, within AO356_00645 at 138.098 kb on - strand, within AO356_00645 at 138.098 kb on - strand, within AO356_00645 at 138.100 kb on + strand, within AO356_00645 at 138.100 kb on + strand, within AO356_00645 at 138.100 kb on + strand, within AO356_00645 at 138.100 kb on + strand, within AO356_00645 at 138.101 kb on - strand, within AO356_00645 at 138.101 kb on - strand, within AO356_00645 at 138.101 kb on - strand at 138.213 kb on + strand, within AO356_00645 at 138.445 kb on + strand, within AO356_00645 at 138.446 kb on - strand, within AO356_00645 at 138.446 kb on - strand, within AO356_00645 at 138.446 kb on - strand, within AO356_00645 at 138.452 kb on - strand, within AO356_00645 at 138.452 kb on - strand, within AO356_00645 at 138.605 kb on - strand, within AO356_00645 at 138.605 kb on - strand, within AO356_00645 at 138.605 kb on - strand, within AO356_00645 at 138.605 kb on - strand, within AO356_00645 at 138.733 kb on + strand at 138.733 kb on + strand at 138.734 kb on - strand at 138.734 kb on - strand at 138.816 kb on + strand at 138.829 kb on + strand at 138.829 kb on + strand at 138.830 kb on - strand at 138.830 kb on - strand at 139.011 kb on + strand, within AO356_00650 at 139.222 kb on + strand, within AO356_00650 at 139.717 kb on + strand, within AO356_00650 at 139.717 kb on + strand, within AO356_00650 at 139.718 kb on - strand, within AO356_00650 at 139.764 kb on + strand, within AO356_00650 at 139.765 kb on - strand, within AO356_00650 at 139.765 kb on - strand, within AO356_00650 at 139.765 kb on - strand, within AO356_00650
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml remove 136,833 - AO356_00635 0.88 +0.6 136,833 - AO356_00635 0.88 -1.0 136,864 + +0.8 136,864 + +0.6 136,864 + -0.7 136,864 + -0.9 136,864 + -1.2 136,865 - +0.4 136,931 - +0.3 137,019 + -0.2 137,020 - -0.6 137,020 - +0.5 137,020 - +0.8 137,153 + AO356_00640 0.17 -0.2 137,154 - AO356_00640 0.17 -1.0 137,154 - AO356_00640 0.17 +0.4 137,212 + AO356_00640 0.26 +1.0 137,213 - AO356_00640 0.26 +1.1 137,213 - AO356_00640 0.26 -0.7 137,213 - AO356_00640 0.26 +2.2 137,254 + AO356_00640 0.33 +0.8 137,255 - AO356_00640 0.33 +0.3 137,255 - AO356_00640 0.33 -0.5 137,296 + AO356_00640 0.40 -0.1 137,296 + AO356_00640 0.40 -0.5 137,296 + AO356_00640 0.40 +1.2 137,297 - AO356_00640 0.40 +0.7 137,297 - AO356_00640 0.40 +1.4 137,350 + AO356_00640 0.48 +0.3 137,350 + AO356_00640 0.48 +0.5 137,618 - +1.0 137,756 - +0.0 137,990 - AO356_00645 0.18 -0.3 138,097 + AO356_00645 0.28 -0.0 138,097 + AO356_00645 0.28 -0.6 138,098 - AO356_00645 0.28 +0.1 138,098 - AO356_00645 0.28 -0.4 138,100 + AO356_00645 0.29 +1.7 138,100 + AO356_00645 0.29 -0.2 138,100 + AO356_00645 0.29 +0.6 138,100 + AO356_00645 0.29 -0.1 138,101 - AO356_00645 0.29 -1.8 138,101 - AO356_00645 0.29 -0.6 138,101 - +0.2 138,213 + AO356_00645 0.40 -0.3 138,445 + AO356_00645 0.63 -1.2 138,446 - AO356_00645 0.64 -0.7 138,446 - AO356_00645 0.64 -0.2 138,446 - AO356_00645 0.64 -3.4 138,452 - AO356_00645 0.64 -0.1 138,452 - AO356_00645 0.64 +0.6 138,605 - AO356_00645 0.80 +0.9 138,605 - AO356_00645 0.80 -1.3 138,605 - AO356_00645 0.80 +0.0 138,605 - AO356_00645 0.80 -0.7 138,733 + +0.7 138,733 + -0.5 138,734 - -0.6 138,734 - -0.9 138,816 + -0.4 138,829 + +0.1 138,829 + +0.9 138,830 - -2.3 138,830 - -0.6 139,011 + AO356_00650 0.13 -0.2 139,222 + AO356_00650 0.30 +0.3 139,717 + AO356_00650 0.72 -0.1 139,717 + AO356_00650 0.72 +0.8 139,718 - AO356_00650 0.72 +1.2 139,764 + AO356_00650 0.76 +0.6 139,765 - AO356_00650 0.76 +1.4 139,765 - AO356_00650 0.76 +0.9 139,765 - AO356_00650 0.76 +0.3
Or see this region's nucleotide sequence