Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004712 and ABIE53_004713 are separated by 598 nucleotides ABIE53_004713 and ABIE53_004714 are separated by 62 nucleotides
ABIE53_004712: ABIE53_004712 - DNA-binding protein H-NS, at 903,777 to 904,067
_004712
ABIE53_004713: ABIE53_004713 - 5,6,7,8-tetrahydromethanopterin hydro-lyase, at 904,666 to 905,190
_004713
ABIE53_004714: ABIE53_004714 - aryl-alcohol dehydrogenase-like predicted oxidoreductase, at 905,253 to 906,290
_004714
Position (kb) 904
905
906 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 903.732 kb on - strand at 903.732 kb on - strand at 903.732 kb on - strand at 903.786 kb on + strand at 903.786 kb on + strand at 903.786 kb on + strand at 903.786 kb on + strand at 903.786 kb on + strand at 903.787 kb on - strand at 903.787 kb on - strand at 903.787 kb on - strand at 903.787 kb on - strand at 903.863 kb on + strand, within ABIE53_004712 at 903.895 kb on - strand, within ABIE53_004712 at 903.969 kb on + strand, within ABIE53_004712 at 903.969 kb on + strand, within ABIE53_004712 at 903.970 kb on - strand, within ABIE53_004712 at 903.970 kb on - strand, within ABIE53_004712 at 903.970 kb on - strand, within ABIE53_004712 at 904.050 kb on + strand at 904.051 kb on - strand at 904.051 kb on - strand at 904.065 kb on + strand at 904.182 kb on + strand at 904.182 kb on + strand at 904.182 kb on + strand at 904.183 kb on - strand at 904.426 kb on + strand at 904.427 kb on - strand at 904.427 kb on - strand at 904.427 kb on - strand at 904.478 kb on + strand at 904.533 kb on + strand at 904.534 kb on - strand at 904.583 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.607 kb on - strand at 904.607 kb on - strand at 904.607 kb on - strand at 904.607 kb on - strand at 904.607 kb on - strand at 904.607 kb on - strand at 904.648 kb on + strand at 904.648 kb on + strand at 904.649 kb on - strand at 904.649 kb on - strand at 904.649 kb on - strand at 904.673 kb on + strand at 904.695 kb on + strand at 904.696 kb on - strand at 904.737 kb on + strand, within ABIE53_004713 at 904.737 kb on + strand, within ABIE53_004713 at 904.737 kb on + strand, within ABIE53_004713 at 904.737 kb on + strand, within ABIE53_004713 at 904.738 kb on - strand, within ABIE53_004713 at 904.738 kb on - strand, within ABIE53_004713 at 904.738 kb on - strand, within ABIE53_004713 at 904.738 kb on - strand, within ABIE53_004713 at 904.873 kb on + strand, within ABIE53_004713 at 904.873 kb on + strand, within ABIE53_004713 at 904.873 kb on + strand, within ABIE53_004713 at 904.873 kb on + strand, within ABIE53_004713 at 904.873 kb on + strand, within ABIE53_004713 at 904.873 kb on + strand, within ABIE53_004713 at 904.873 kb on + strand, within ABIE53_004713 at 904.874 kb on - strand, within ABIE53_004713 at 904.874 kb on - strand, within ABIE53_004713 at 904.874 kb on - strand, within ABIE53_004713 at 904.874 kb on - strand, within ABIE53_004713 at 905.075 kb on - strand, within ABIE53_004713 at 905.171 kb on - strand at 905.171 kb on - strand at 905.171 kb on - strand at 905.235 kb on + strand at 905.235 kb on + strand at 905.235 kb on + strand at 905.236 kb on - strand at 905.236 kb on - strand at 905.236 kb on - strand at 905.236 kb on - strand at 905.259 kb on + strand at 905.259 kb on + strand at 905.259 kb on + strand at 905.259 kb on + strand at 905.259 kb on + strand at 905.259 kb on + strand at 905.259 kb on + strand at 905.259 kb on + strand at 905.260 kb on - strand at 905.427 kb on + strand, within ABIE53_004714 at 905.517 kb on + strand, within ABIE53_004714 at 905.532 kb on + strand, within ABIE53_004714 at 905.533 kb on - strand, within ABIE53_004714 at 905.610 kb on + strand, within ABIE53_004714 at 905.610 kb on + strand, within ABIE53_004714 at 905.610 kb on + strand, within ABIE53_004714 at 905.611 kb on - strand, within ABIE53_004714 at 905.611 kb on - strand, within ABIE53_004714 at 905.611 kb on - strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.709 kb on + strand, within ABIE53_004714 at 905.709 kb on + strand, within ABIE53_004714 at 905.710 kb on - strand, within ABIE53_004714 at 905.710 kb on - strand, within ABIE53_004714 at 905.710 kb on - strand, within ABIE53_004714 at 905.711 kb on + strand, within ABIE53_004714 at 905.711 kb on + strand, within ABIE53_004714 at 905.712 kb on - strand, within ABIE53_004714 at 905.730 kb on + strand, within ABIE53_004714 at 905.730 kb on + strand, within ABIE53_004714 at 905.730 kb on + strand, within ABIE53_004714 at 905.730 kb on + strand, within ABIE53_004714 at 905.730 kb on + strand, within ABIE53_004714 at 905.730 kb on + strand, within ABIE53_004714 at 905.730 kb on + strand, within ABIE53_004714 at 905.730 kb on + strand, within ABIE53_004714 at 905.730 kb on + strand, within ABIE53_004714 at 905.731 kb on - strand, within ABIE53_004714 at 905.731 kb on - strand, within ABIE53_004714 at 905.731 kb on - strand, within ABIE53_004714 at 905.731 kb on - strand, within ABIE53_004714 at 905.731 kb on - strand, within ABIE53_004714 at 905.731 kb on - strand, within ABIE53_004714 at 905.731 kb on - strand, within ABIE53_004714 at 905.731 kb on - strand, within ABIE53_004714 at 905.731 kb on - strand, within ABIE53_004714 at 905.731 kb on - strand, within ABIE53_004714 at 905.783 kb on + strand, within ABIE53_004714 at 905.783 kb on + strand, within ABIE53_004714 at 905.784 kb on - strand, within ABIE53_004714 at 905.821 kb on - strand, within ABIE53_004714 at 905.851 kb on - strand, within ABIE53_004714 at 906.183 kb on + strand, within ABIE53_004714 at 906.183 kb on + strand, within ABIE53_004714 at 906.183 kb on + strand, within ABIE53_004714 at 906.184 kb on - strand, within ABIE53_004714 at 906.184 kb on - strand, within ABIE53_004714
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 903,732 - -1.5 903,732 - -1.5 903,732 - -0.5 903,786 + +0.4 903,786 + -0.2 903,786 + -0.8 903,786 + +2.2 903,786 + +0.8 903,787 - +0.8 903,787 - -2.7 903,787 - -0.1 903,787 - -0.9 903,863 + ABIE53_004712 0.30 -0.8 903,895 - ABIE53_004712 0.41 -2.2 903,969 + ABIE53_004712 0.66 -0.8 903,969 + ABIE53_004712 0.66 -1.0 903,970 - ABIE53_004712 0.66 -1.4 903,970 - ABIE53_004712 0.66 -0.8 903,970 - ABIE53_004712 0.66 +0.0 904,050 + -2.7 904,051 - -0.5 904,051 - -0.1 904,065 + +1.8 904,182 + -1.9 904,182 + +1.5 904,182 + -0.8 904,183 - -2.6 904,426 + -1.0 904,427 - -1.4 904,427 - -1.5 904,427 - +0.1 904,478 + +0.4 904,533 + +0.7 904,534 - -1.9 904,583 + -0.7 904,606 + -0.2 904,606 + +0.2 904,606 + +1.2 904,606 + +0.2 904,606 + -0.2 904,606 + -0.2 904,606 + -0.7 904,606 + +1.1 904,606 + -0.3 904,607 - -1.1 904,607 - +1.1 904,607 - -1.2 904,607 - +0.5 904,607 - -3.0 904,607 - -1.5 904,648 + -0.2 904,648 + +0.5 904,649 - +2.8 904,649 - -0.4 904,649 - +0.7 904,673 + +2.5 904,695 + +0.6 904,696 - -2.6 904,737 + ABIE53_004713 0.14 +0.8 904,737 + ABIE53_004713 0.14 -1.8 904,737 + ABIE53_004713 0.14 +0.8 904,737 + ABIE53_004713 0.14 -0.9 904,738 - ABIE53_004713 0.14 -1.2 904,738 - ABIE53_004713 0.14 -2.0 904,738 - ABIE53_004713 0.14 -0.5 904,738 - ABIE53_004713 0.14 -1.2 904,873 + ABIE53_004713 0.39 -0.3 904,873 + ABIE53_004713 0.39 +1.0 904,873 + ABIE53_004713 0.39 +0.8 904,873 + ABIE53_004713 0.39 +3.0 904,873 + ABIE53_004713 0.39 +2.2 904,873 + ABIE53_004713 0.39 -2.1 904,873 + ABIE53_004713 0.39 +1.5 904,874 - ABIE53_004713 0.40 +1.4 904,874 - ABIE53_004713 0.40 +0.4 904,874 - ABIE53_004713 0.40 +0.2 904,874 - ABIE53_004713 0.40 -0.2 905,075 - ABIE53_004713 0.78 -0.5 905,171 - -1.4 905,171 - +0.8 905,171 - -1.0 905,235 + +1.8 905,235 + -1.0 905,235 + +0.4 905,236 - +0.4 905,236 - -0.6 905,236 - +0.2 905,236 - -0.8 905,259 + +1.0 905,259 + -0.6 905,259 + +0.3 905,259 + +0.3 905,259 + +0.2 905,259 + -1.5 905,259 + -0.5 905,259 + +0.5 905,260 - -1.7 905,427 + ABIE53_004714 0.17 -0.4 905,517 + ABIE53_004714 0.25 +1.5 905,532 + ABIE53_004714 0.27 +0.1 905,533 - ABIE53_004714 0.27 -3.5 905,610 + ABIE53_004714 0.34 +0.4 905,610 + ABIE53_004714 0.34 +0.8 905,610 + ABIE53_004714 0.34 -1.5 905,611 - ABIE53_004714 0.34 +0.9 905,611 - ABIE53_004714 0.34 -1.5 905,611 - ABIE53_004714 0.34 +1.5 905,622 + ABIE53_004714 0.36 -0.6 905,622 + ABIE53_004714 0.36 +1.4 905,622 + ABIE53_004714 0.36 -1.2 905,622 + ABIE53_004714 0.36 +0.2 905,622 + ABIE53_004714 0.36 -2.3 905,622 + ABIE53_004714 0.36 -0.2 905,622 + ABIE53_004714 0.36 -1.0 905,622 + ABIE53_004714 0.36 -2.0 905,622 + ABIE53_004714 0.36 +2.8 905,622 + ABIE53_004714 0.36 -0.2 905,622 + ABIE53_004714 0.36 +0.6 905,622 + ABIE53_004714 0.36 -2.2 905,622 + ABIE53_004714 0.36 -1.1 905,622 + ABIE53_004714 0.36 +0.8 905,622 + ABIE53_004714 0.36 -0.5 905,622 + ABIE53_004714 0.36 +0.2 905,622 + ABIE53_004714 0.36 +0.1 905,622 + ABIE53_004714 0.36 +0.9 905,622 + ABIE53_004714 0.36 -1.8 905,623 - ABIE53_004714 0.36 -0.5 905,623 - ABIE53_004714 0.36 -1.0 905,623 - ABIE53_004714 0.36 -1.9 905,623 - ABIE53_004714 0.36 +0.8 905,623 - ABIE53_004714 0.36 +1.8 905,623 - ABIE53_004714 0.36 -1.0 905,623 - ABIE53_004714 0.36 +3.9 905,623 - ABIE53_004714 0.36 -2.5 905,623 - ABIE53_004714 0.36 +0.7 905,623 - ABIE53_004714 0.36 +1.1 905,623 - ABIE53_004714 0.36 -0.7 905,623 - ABIE53_004714 0.36 -0.4 905,623 - ABIE53_004714 0.36 +0.2 905,709 + ABIE53_004714 0.44 +1.8 905,709 + ABIE53_004714 0.44 +2.4 905,710 - ABIE53_004714 0.44 -0.5 905,710 - ABIE53_004714 0.44 -0.7 905,710 - ABIE53_004714 0.44 -1.0 905,711 + ABIE53_004714 0.44 -1.4 905,711 + ABIE53_004714 0.44 +0.6 905,712 - ABIE53_004714 0.44 -2.8 905,730 + ABIE53_004714 0.46 +0.9 905,730 + ABIE53_004714 0.46 +0.8 905,730 + ABIE53_004714 0.46 -0.0 905,730 + ABIE53_004714 0.46 -1.0 905,730 + ABIE53_004714 0.46 -0.5 905,730 + ABIE53_004714 0.46 -1.8 905,730 + ABIE53_004714 0.46 -1.0 905,730 + ABIE53_004714 0.46 -0.5 905,730 + ABIE53_004714 0.46 -0.2 905,731 - ABIE53_004714 0.46 -0.8 905,731 - ABIE53_004714 0.46 -2.4 905,731 - ABIE53_004714 0.46 +0.8 905,731 - ABIE53_004714 0.46 +0.2 905,731 - ABIE53_004714 0.46 +0.8 905,731 - ABIE53_004714 0.46 +1.3 905,731 - ABIE53_004714 0.46 +1.8 905,731 - ABIE53_004714 0.46 +0.4 905,731 - ABIE53_004714 0.46 +0.4 905,731 - ABIE53_004714 0.46 -0.8 905,783 + ABIE53_004714 0.51 +0.8 905,783 + ABIE53_004714 0.51 -0.8 905,784 - ABIE53_004714 0.51 +0.8 905,821 - ABIE53_004714 0.55 +2.0 905,851 - ABIE53_004714 0.58 +0.8 906,183 + ABIE53_004714 0.90 -0.8 906,183 + ABIE53_004714 0.90 -0.2 906,183 + ABIE53_004714 0.90 -0.9 906,184 - ABIE53_004714 0.90 +0.8 906,184 - ABIE53_004714 0.90 -0.4
Or see this region's nucleotide sequence