Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002316

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
2,597,815	+		ABIE53_002315	0.16	+0.4
2,597,815	+		ABIE53_002315	0.16	-1.0
2,597,815	+		ABIE53_002315	0.16	+1.7
2,597,816	-		ABIE53_002315	0.16	+0.7
2,597,816	-		ABIE53_002315	0.16	-0.0
2,597,878	-		ABIE53_002315	0.22	+0.7
2,597,922	+		ABIE53_002315	0.26	-0.1
2,597,923	-		ABIE53_002315	0.26	-2.8
2,597,923	-		ABIE53_002315	0.26	+0.7
2,597,923	-		ABIE53_002315	0.26	-1.3
2,598,080	+		ABIE53_002315	0.42	-0.8
2,598,080	+		ABIE53_002315	0.42	-1.0
2,598,094	+		ABIE53_002315	0.43	+1.0
2,598,094	+		ABIE53_002315	0.43	-0.6
2,598,094	+		ABIE53_002315	0.43	-0.6
2,598,095	-		ABIE53_002315	0.43	-2.1
2,598,095	-		ABIE53_002315	0.43	-0.8
2,598,335	+		ABIE53_002315	0.66	-0.3
2,598,335	+		ABIE53_002315	0.66	+1.0
2,598,335	+		ABIE53_002315	0.66	+0.4
2,598,336	-		ABIE53_002315	0.66	-1.0
2,598,336	-		ABIE53_002315	0.66	-0.4
2,598,344	+		ABIE53_002315	0.67	-3.2
2,598,344	+		ABIE53_002315	0.67	-1.8
2,598,345	-		ABIE53_002315	0.67	-0.0
2,598,345	-		ABIE53_002315	0.67	+0.2
2,598,361	+		ABIE53_002315	0.69	+1.3
2,598,362	-		ABIE53_002315	0.69	-0.0
2,598,374	-		ABIE53_002315	0.70	+0.4
2,598,618	+				+1.3
2,598,618	+				+0.4
2,598,619	-				-0.8
2,598,684	-				-1.7
2,598,684	-				-1.3
2,598,731	+				+1.4
2,598,731	+				-1.5
2,598,732	-				-1.2
2,598,732	-				-1.2
2,598,824	+				-0.2
2,598,824	+				+0.7
2,598,825	-				+1.4
2,598,878	+				-0.2
2,598,879	-				-5.4
2,598,879	-				-0.0
2,598,994	-		ABIE53_002316	0.11	+0.4
2,598,994	-		ABIE53_002316	0.11	-0.6
2,598,994	-		ABIE53_002316	0.11	-0.6
2,599,040	+		ABIE53_002316	0.14	-3.5
2,599,040	+		ABIE53_002316	0.14	+1.0
2,599,041	-		ABIE53_002316	0.14	-0.8
2,599,067	+		ABIE53_002316	0.16	-2.8
2,599,067	+		ABIE53_002316	0.16	-2.3
2,599,067	+		ABIE53_002316	0.16	+2.0
2,599,067	+		ABIE53_002316	0.16	-2.1
2,599,068	-		ABIE53_002316	0.16	-1.5
2,599,068	-		ABIE53_002316	0.16	-2.3
2,599,068	-		ABIE53_002316	0.16	-3.0
2,599,068	-		ABIE53_002316	0.16	-0.0
2,599,133	-		ABIE53_002316	0.19	+2.0
2,599,175	+		ABIE53_002316	0.22	+0.4
2,599,175	+		ABIE53_002316	0.22	-0.3
2,599,176	-		ABIE53_002316	0.22	-1.5
2,599,176	-		ABIE53_002316	0.22	-2.3
2,599,217	+		ABIE53_002316	0.24	-1.0
2,599,335	-		ABIE53_002316	0.31	-2.5
2,599,352	+		ABIE53_002316	0.32	-1.0
2,599,352	+		ABIE53_002316	0.32	-2.3
2,599,353	-		ABIE53_002316	0.32	-1.6
2,599,353	-		ABIE53_002316	0.32	-1.2
2,599,353	-		ABIE53_002316	0.32	-0.3
2,599,355	+		ABIE53_002316	0.32	+0.4
2,599,355	+		ABIE53_002316	0.32	+0.4
2,599,356	-		ABIE53_002316	0.32	-3.2
2,599,356	-		ABIE53_002316	0.32	-2.7
2,599,379	+		ABIE53_002316	0.34	-1.0
2,599,380	-		ABIE53_002316	0.34	-0.0
2,599,445	+		ABIE53_002316	0.38	-2.3
2,599,445	+		ABIE53_002316	0.38	-1.5
2,599,445	+		ABIE53_002316	0.38	-1.7
2,599,445	+		ABIE53_002316	0.38	-2.2
2,599,445	+		ABIE53_002316	0.38	+0.4
2,599,445	+		ABIE53_002316	0.38	-2.5
2,599,446	-		ABIE53_002316	0.38	-1.0
2,599,446	-		ABIE53_002316	0.38	-2.1
2,599,446	-		ABIE53_002316	0.38	-2.1
2,599,446	-		ABIE53_002316	0.38	-0.0
2,599,446	-		ABIE53_002316	0.38	-1.9
2,599,446	-		ABIE53_002316	0.38	-2.9
2,599,466	+		ABIE53_002316	0.39	-1.5
2,599,466	+		ABIE53_002316	0.39	-3.3
2,599,466	+		ABIE53_002316	0.39	-0.0
2,599,467	-		ABIE53_002316	0.39	+2.0
2,599,467	-		ABIE53_002316	0.39	-0.8
2,599,467	-		ABIE53_002316	0.39	-3.9
2,599,467	-		ABIE53_002316	0.39	-3.0
2,599,467	-		ABIE53_002316	0.39	+1.0
2,599,467	-		ABIE53_002316	0.39	+1.0
2,599,604	+		ABIE53_002316	0.47	+0.0
2,599,604	+		ABIE53_002316	0.47	-1.9
2,599,604	+		ABIE53_002316	0.47	-0.8
2,599,604	+		ABIE53_002316	0.47	-0.4
2,599,604	+		ABIE53_002316	0.47	-0.3
2,599,604	+		ABIE53_002316	0.47	-2.8
2,599,605	-		ABIE53_002316	0.47	+1.0
2,599,665	+		ABIE53_002316	0.50	-0.3
2,599,665	+		ABIE53_002316	0.50	-3.0
2,599,666	-		ABIE53_002316	0.51	-1.9
2,599,666	-		ABIE53_002316	0.51	-0.6
2,599,666	-		ABIE53_002316	0.51	-2.3
2,599,666	-		ABIE53_002316	0.51	+1.0
2,599,690	+		ABIE53_002316	0.52	+0.4
2,599,690	+		ABIE53_002316	0.52	-1.5
2,599,691	-		ABIE53_002316	0.52	-1.7
2,599,715	+		ABIE53_002316	0.53	-2.2
2,599,716	-		ABIE53_002316	0.53	-3.7
2,599,716	-		ABIE53_002316	0.53	-2.0
2,599,716	-		ABIE53_002316	0.53	+2.0
2,599,778	+		ABIE53_002316	0.57	+0.4
2,599,778	+		ABIE53_002316	0.57	-2.0
2,599,778	+		ABIE53_002316	0.57	+1.0
2,599,779	-		ABIE53_002316	0.57	+1.0
2,599,779	-		ABIE53_002316	0.57	-2.8
2,599,779	-		ABIE53_002316	0.57	-0.3
2,599,793	+		ABIE53_002316	0.58	+0.4
2,599,793	+		ABIE53_002316	0.58	-1.2
2,599,793	+		ABIE53_002316	0.58	-1.9
2,599,793	+		ABIE53_002316	0.58	-0.6
2,599,871	+		ABIE53_002316	0.62	-0.3
2,599,872	-		ABIE53_002316	0.63	-3.6
2,599,872	-		ABIE53_002316	0.63	-3.3
2,599,872	-		ABIE53_002316	0.63	-1.7
2,599,884	-		ABIE53_002316	0.63	-3.0
2,599,893	-		ABIE53_002316	0.64	-2.3
2,599,934	+		ABIE53_002316	0.66	-2.5
2,599,934	+		ABIE53_002316	0.66	-1.6
2,599,934	+		ABIE53_002316	0.66	-1.6
2,599,934	+		ABIE53_002316	0.66	+0.4
2,599,934	+		ABIE53_002316	0.66	-0.8
2,599,935	-		ABIE53_002316	0.66	-0.8
2,599,935	-		ABIE53_002316	0.66	-0.3
2,599,935	-		ABIE53_002316	0.66	-1.2
2,599,935	-		ABIE53_002316	0.66	-1.5
2,599,935	-		ABIE53_002316	0.66	+2.0
2,599,935	-		ABIE53_002316	0.66	+1.0
2,599,964	+		ABIE53_002316	0.68	+2.0
2,600,021	+		ABIE53_002316	0.71	-3.9
2,600,022	-		ABIE53_002316	0.71	-0.3
2,600,057	+		ABIE53_002316	0.73	-1.0
2,600,084	+		ABIE53_002316	0.75	-0.0
2,600,159	+		ABIE53_002316	0.79	-1.5
2,600,160	-		ABIE53_002316	0.79	+2.0
2,600,222	+		ABIE53_002316	0.83	-1.6
2,600,222	+		ABIE53_002316	0.83	+0.4
2,600,222	+		ABIE53_002316	0.83	-3.5
2,600,223	-		ABIE53_002316	0.83	-1.0
2,600,245	-		ABIE53_002316	0.84	+0.4
2,600,245	-		ABIE53_002316	0.84	+0.4
2,600,255	+		ABIE53_002316	0.85	-2.1
2,600,255	+		ABIE53_002316	0.85	-1.7
2,600,256	-		ABIE53_002316	0.85	-1.3
2,600,256	-		ABIE53_002316	0.85	-2.4
2,600,256	-		ABIE53_002316	0.85	-2.2
2,600,256	-		ABIE53_002316	0.85	-0.4
2,600,256	-		ABIE53_002316	0.85	+0.1
2,600,557	+				+0.2
2,600,558	-				-1.4
2,600,558	-				-4.5
2,600,558	-				-1.7
2,600,594	+				-1.8
2,600,594	+				-0.3
2,600,624	-				-1.0
2,600,663	+		ABIE53_002317	0.12	-4.9
2,600,663	+		ABIE53_002317	0.12	-2.3
2,600,664	-		ABIE53_002317	0.12	-0.6
2,600,664	-		ABIE53_002317	0.12	-1.8
2,600,666	-		ABIE53_002317	0.12	+1.0
2,600,666	-		ABIE53_002317	0.12	-1.6
2,600,666	-		ABIE53_002317	0.12	-2.3
2,600,675	-		ABIE53_002317	0.13	-2.1
2,600,707	-		ABIE53_002317	0.15	-0.3
2,600,707	-		ABIE53_002317	0.15	-1.6
2,600,707	-		ABIE53_002317	0.15	-2.1
2,600,768	-		ABIE53_002317	0.20	+0.4
2,600,768	-		ABIE53_002317	0.20	+1.0
2,600,836	-		ABIE53_002317	0.26	-3.2
2,600,935	+		ABIE53_002317	0.33	-2.2
2,600,936	-		ABIE53_002317	0.33	+0.7
2,600,936	-		ABIE53_002317	0.33	-2.1
2,600,956	+		ABIE53_002317	0.35	-2.1
2,600,956	+		ABIE53_002317	0.35	-0.2
2,600,956	+		ABIE53_002317	0.35	-2.6
2,600,956	+		ABIE53_002317	0.35	-3.0
2,600,956	+		ABIE53_002317	0.35	-2.8
2,600,956	+		ABIE53_002317	0.35	+2.0
2,600,957	-		ABIE53_002317	0.35	-1.6
2,600,957	-		ABIE53_002317	0.35	-0.3
2,600,957	-		ABIE53_002317	0.35	+1.0
2,601,079	+		ABIE53_002317	0.45	-3.9
2,601,080	-		ABIE53_002317	0.45	+0.4
2,601,407	-		ABIE53_002317	0.70	-0.8
2,601,407	-		ABIE53_002317	0.70	-2.2
2,601,407	-		ABIE53_002317	0.70	+2.0