Experiment: m.b. nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1746 and Dshi_1747 are separated by 99 nucleotides Dshi_1747 and Dshi_1748 are separated by 71 nucleotides
Dshi_1746: Dshi_1746 - transcriptional regulator, LysR family (RefSeq), at 1,811,339 to 1,812,232
_1746
Dshi_1747: Dshi_1747 - methylmalonate-semialdehyde dehydrogenase (RefSeq), at 1,812,332 to 1,813,831
_1747
Dshi_1748: Dshi_1748 - hypothetical protein (RefSeq), at 1,813,903 to 1,814,532
_1748
Position (kb)
1812
1813
1814 Strain fitness (log2 ratio)
-1
0
1 at 1811.767 kb on - strand, within Dshi_1746 at 1811.781 kb on + strand, within Dshi_1746 at 1811.799 kb on - strand, within Dshi_1746 at 1811.831 kb on + strand, within Dshi_1746 at 1811.935 kb on - strand, within Dshi_1746 at 1811.962 kb on + strand, within Dshi_1746 at 1812.221 kb on + strand at 1812.302 kb on + strand at 1812.317 kb on + strand at 1812.587 kb on + strand, within Dshi_1747 at 1812.645 kb on + strand, within Dshi_1747 at 1812.645 kb on + strand, within Dshi_1747 at 1812.645 kb on + strand, within Dshi_1747 at 1812.645 kb on + strand, within Dshi_1747 at 1812.645 kb on + strand, within Dshi_1747 at 1812.653 kb on - strand, within Dshi_1747 at 1812.653 kb on - strand, within Dshi_1747 at 1812.713 kb on + strand, within Dshi_1747 at 1812.713 kb on + strand, within Dshi_1747 at 1813.013 kb on - strand, within Dshi_1747 at 1813.286 kb on + strand, within Dshi_1747 at 1813.286 kb on + strand, within Dshi_1747 at 1813.307 kb on - strand, within Dshi_1747 at 1813.332 kb on - strand, within Dshi_1747 at 1813.664 kb on - strand, within Dshi_1747 at 1813.725 kb on - strand at 1813.728 kb on + strand at 1813.728 kb on + strand at 1813.728 kb on + strand at 1813.736 kb on - strand at 1813.736 kb on - strand at 1813.773 kb on + strand at 1813.870 kb on - strand at 1813.947 kb on - strand at 1814.022 kb on - strand, within Dshi_1748 at 1814.090 kb on + strand, within Dshi_1748 at 1814.182 kb on - strand, within Dshi_1748 at 1814.285 kb on + strand, within Dshi_1748 at 1814.285 kb on + strand, within Dshi_1748 at 1814.285 kb on + strand, within Dshi_1748 at 1814.355 kb on + strand, within Dshi_1748 at 1814.367 kb on + strand, within Dshi_1748 at 1814.369 kb on - strand, within Dshi_1748 at 1814.374 kb on + strand, within Dshi_1748 at 1814.382 kb on - strand, within Dshi_1748 at 1814.402 kb on - strand, within Dshi_1748 at 1814.407 kb on - strand, within Dshi_1748 at 1814.411 kb on + strand, within Dshi_1748 at 1814.413 kb on + strand, within Dshi_1748 at 1814.442 kb on + strand, within Dshi_1748 at 1814.466 kb on + strand, within Dshi_1748 at 1814.469 kb on - strand, within Dshi_1748 at 1814.486 kb on - strand at 1814.499 kb on - strand at 1814.539 kb on - strand at 1814.539 kb on - strand at 1814.613 kb on + strand at 1814.655 kb on + strand at 1814.655 kb on + strand at 1814.655 kb on + strand at 1814.655 kb on + strand at 1814.663 kb on + strand at 1814.663 kb on - strand at 1814.665 kb on + strand at 1814.665 kb on + strand at 1814.708 kb on - strand at 1814.710 kb on + strand at 1814.718 kb on - strand at 1814.740 kb on - strand at 1814.740 kb on - strand at 1814.740 kb on - strand at 1814.792 kb on + strand at 1814.800 kb on - strand at 1814.807 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 200 mM remove 1,811,767 - Dshi_1746 0.48 +0.8 1,811,781 + Dshi_1746 0.49 +1.1 1,811,799 - Dshi_1746 0.51 +0.1 1,811,831 + Dshi_1746 0.55 -0.1 1,811,935 - Dshi_1746 0.67 -0.4 1,811,962 + Dshi_1746 0.70 +0.2 1,812,221 + +0.1 1,812,302 + +1.1 1,812,317 + -0.1 1,812,587 + Dshi_1747 0.17 -0.4 1,812,645 + Dshi_1747 0.21 -0.2 1,812,645 + Dshi_1747 0.21 -1.6 1,812,645 + Dshi_1747 0.21 +0.1 1,812,645 + Dshi_1747 0.21 +0.3 1,812,645 + Dshi_1747 0.21 +1.1 1,812,653 - Dshi_1747 0.21 +0.2 1,812,653 - Dshi_1747 0.21 -0.1 1,812,713 + Dshi_1747 0.25 -0.6 1,812,713 + Dshi_1747 0.25 -0.9 1,813,013 - Dshi_1747 0.45 +0.5 1,813,286 + Dshi_1747 0.64 +0.0 1,813,286 + Dshi_1747 0.64 +0.4 1,813,307 - Dshi_1747 0.65 +0.3 1,813,332 - Dshi_1747 0.67 +0.4 1,813,664 - Dshi_1747 0.89 -0.6 1,813,725 - +0.2 1,813,728 + +0.1 1,813,728 + -0.5 1,813,728 + +0.4 1,813,736 - -0.4 1,813,736 - -0.4 1,813,773 + -0.8 1,813,870 - -0.1 1,813,947 - -0.2 1,814,022 - Dshi_1748 0.19 +0.8 1,814,090 + Dshi_1748 0.30 -0.1 1,814,182 - Dshi_1748 0.44 -0.6 1,814,285 + Dshi_1748 0.61 -0.1 1,814,285 + Dshi_1748 0.61 +0.4 1,814,285 + Dshi_1748 0.61 -0.6 1,814,355 + Dshi_1748 0.72 -0.1 1,814,367 + Dshi_1748 0.74 +0.5 1,814,369 - Dshi_1748 0.74 -0.4 1,814,374 + Dshi_1748 0.75 +0.7 1,814,382 - Dshi_1748 0.76 +0.2 1,814,402 - Dshi_1748 0.79 +0.6 1,814,407 - Dshi_1748 0.80 -0.6 1,814,411 + Dshi_1748 0.81 -1.1 1,814,413 + Dshi_1748 0.81 -1.4 1,814,442 + Dshi_1748 0.86 -0.4 1,814,466 + Dshi_1748 0.89 -0.2 1,814,469 - Dshi_1748 0.90 -0.4 1,814,486 - -0.8 1,814,499 - -0.3 1,814,539 - +0.3 1,814,539 - -0.4 1,814,613 + -0.5 1,814,655 + -0.8 1,814,655 + +0.9 1,814,655 + +0.1 1,814,655 + -0.8 1,814,663 + +0.5 1,814,663 - +0.5 1,814,665 + -0.6 1,814,665 + -0.1 1,814,708 - -0.9 1,814,710 + -0.4 1,814,718 - +0.1 1,814,740 - -1.4 1,814,740 - -0.4 1,814,740 - +0.0 1,814,792 + -0.1 1,814,800 - -0.9 1,814,807 + +0.8
Or see this region's nucleotide sequence