Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0077

Experiment: m.b. nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0075 and Dshi_0076 are separated by 392 nucleotidesDshi_0076 and Dshi_0077 are separated by 12 nucleotidesDshi_0077 and Dshi_0078 are separated by 42 nucleotidesDshi_0078 and Dshi_R0001 are separated by 329 nucleotides Dshi_0075: Dshi_0075 - hypothetical protein (RefSeq), at 75,136 to 75,378 _0075 Dshi_0076: Dshi_0076 - hypothetical protein (RefSeq), at 75,771 to 76,007 _0076 Dshi_0077: Dshi_0077 - hypothetical protein (RefSeq), at 76,020 to 76,910 _0077 Dshi_0078: Dshi_0078 - hypothetical protein (RefSeq), at 76,953 to 77,537 _0078 Dshi_R0001: Dshi_R0001 - tRNA-Pro (RefSeq), at 77,867 to 77,943 _R0001 Position (kb) 76 77Strain fitness (log2 ratio) -2 -1 0 1 2at 75.102 kb on + strandat 75.119 kb on + strandat 75.191 kb on - strand, within Dshi_0075at 75.246 kb on + strand, within Dshi_0075at 75.246 kb on + strand, within Dshi_0075at 75.259 kb on - strand, within Dshi_0075at 75.278 kb on - strand, within Dshi_0075at 75.293 kb on - strand, within Dshi_0075at 75.333 kb on - strand, within Dshi_0075at 75.411 kb on - strandat 75.418 kb on - strandat 75.421 kb on - strandat 75.451 kb on + strandat 75.459 kb on - strandat 75.502 kb on - strandat 75.508 kb on + strandat 75.508 kb on + strandat 75.508 kb on + strandat 75.508 kb on + strandat 75.553 kb on + strandat 75.575 kb on + strandat 75.583 kb on - strandat 75.685 kb on - strandat 75.807 kb on + strand, within Dshi_0076at 75.832 kb on + strand, within Dshi_0076at 75.837 kb on + strand, within Dshi_0076at 75.840 kb on - strand, within Dshi_0076at 75.845 kb on - strand, within Dshi_0076at 75.894 kb on - strand, within Dshi_0076at 75.965 kb on - strand, within Dshi_0076at 76.123 kb on + strand, within Dshi_0077at 76.381 kb on - strand, within Dshi_0077at 76.439 kb on - strand, within Dshi_0077at 76.484 kb on - strand, within Dshi_0077at 76.551 kb on + strand, within Dshi_0077at 76.819 kb on - strand, within Dshi_0077at 77.047 kb on + strand, within Dshi_0078at 77.057 kb on + strand, within Dshi_0078at 77.155 kb on - strand, within Dshi_0078at 77.196 kb on - strand, within Dshi_0078at 77.219 kb on - strand, within Dshi_0078at 77.294 kb on + strand, within Dshi_0078at 77.341 kb on + strand, within Dshi_0078at 77.478 kb on + strand, within Dshi_0078at 77.483 kb on + strandat 77.483 kb on + strandat 77.483 kb on + strandat 77.483 kb on + strandat 77.491 kb on - strandat 77.491 kb on - strandat 77.498 kb on + strandat 77.602 kb on - strandat 77.633 kb on - strandat 77.655 kb on - strandat 77.655 kb on - strandat 77.655 kb on - strandat 77.683 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 200 mM
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75,102 + -0.0
75,119 + +0.0
75,191 - Dshi_0075 0.23 +2.3
75,246 + Dshi_0075 0.45 -0.3
75,246 + Dshi_0075 0.45 -0.8
75,259 - Dshi_0075 0.51 -0.5
75,278 - Dshi_0075 0.58 +0.0
75,293 - Dshi_0075 0.65 -0.5
75,333 - Dshi_0075 0.81 -0.6
75,411 - +0.2
75,418 - +0.5
75,421 - +0.6
75,451 + +1.3
75,459 - +0.2
75,502 - +0.1
75,508 + -0.9
75,508 + +0.3
75,508 + -0.6
75,508 + +1.4
75,553 + -0.1
75,575 + +0.4
75,583 - +0.4
75,685 - +0.1
75,807 + Dshi_0076 0.15 -0.1
75,832 + Dshi_0076 0.26 +0.4
75,837 + Dshi_0076 0.28 +0.4
75,840 - Dshi_0076 0.29 +0.7
75,845 - Dshi_0076 0.31 +1.0
75,894 - Dshi_0076 0.52 -0.6
75,965 - Dshi_0076 0.82 +0.7
76,123 + Dshi_0077 0.12 -0.6
76,381 - Dshi_0077 0.41 -0.6
76,439 - Dshi_0077 0.47 +1.4
76,484 - Dshi_0077 0.52 -0.1
76,551 + Dshi_0077 0.60 -1.9
76,819 - Dshi_0077 0.90 -0.9
77,047 + Dshi_0078 0.16 +0.4
77,057 + Dshi_0078 0.18 -0.0
77,155 - Dshi_0078 0.35 +0.9
77,196 - Dshi_0078 0.42 -0.2
77,219 - Dshi_0078 0.45 -0.4
77,294 + Dshi_0078 0.58 +0.1
77,341 + Dshi_0078 0.66 +0.8
77,478 + Dshi_0078 0.90 -1.6
77,483 + +0.5
77,483 + +0.1
77,483 + +0.3
77,483 + -0.6
77,491 - +0.4
77,491 - +0.0
77,498 + -0.3
77,602 - -1.1
77,633 - -0.6
77,655 - -0.3
77,655 - +0.9
77,655 - -0.0
77,683 + +0.4

Or see this region's nucleotide sequence