Experiment: m.b. nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0075 and Dshi_0076 are separated by 392 nucleotides Dshi_0076 and Dshi_0077 are separated by 12 nucleotides Dshi_0077 and Dshi_0078 are separated by 42 nucleotides Dshi_0078 and Dshi_R0001 are separated by 329 nucleotides
Dshi_0075: Dshi_0075 - hypothetical protein (RefSeq), at 75,136 to 75,378
_0075
Dshi_0076: Dshi_0076 - hypothetical protein (RefSeq), at 75,771 to 76,007
_0076
Dshi_0077: Dshi_0077 - hypothetical protein (RefSeq), at 76,020 to 76,910
_0077
Dshi_0078: Dshi_0078 - hypothetical protein (RefSeq), at 76,953 to 77,537
_0078
Dshi_R0001: Dshi_R0001 - tRNA-Pro (RefSeq), at 77,867 to 77,943
_R0001
Position (kb)
76
77 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 75.102 kb on + strand at 75.119 kb on + strand at 75.191 kb on - strand, within Dshi_0075 at 75.246 kb on + strand, within Dshi_0075 at 75.246 kb on + strand, within Dshi_0075 at 75.259 kb on - strand, within Dshi_0075 at 75.278 kb on - strand, within Dshi_0075 at 75.293 kb on - strand, within Dshi_0075 at 75.333 kb on - strand, within Dshi_0075 at 75.411 kb on - strand at 75.418 kb on - strand at 75.421 kb on - strand at 75.451 kb on + strand at 75.459 kb on - strand at 75.502 kb on - strand at 75.508 kb on + strand at 75.508 kb on + strand at 75.508 kb on + strand at 75.508 kb on + strand at 75.553 kb on + strand at 75.575 kb on + strand at 75.583 kb on - strand at 75.685 kb on - strand at 75.807 kb on + strand, within Dshi_0076 at 75.832 kb on + strand, within Dshi_0076 at 75.837 kb on + strand, within Dshi_0076 at 75.840 kb on - strand, within Dshi_0076 at 75.845 kb on - strand, within Dshi_0076 at 75.894 kb on - strand, within Dshi_0076 at 75.965 kb on - strand, within Dshi_0076 at 76.123 kb on + strand, within Dshi_0077 at 76.381 kb on - strand, within Dshi_0077 at 76.439 kb on - strand, within Dshi_0077 at 76.484 kb on - strand, within Dshi_0077 at 76.551 kb on + strand, within Dshi_0077 at 76.819 kb on - strand, within Dshi_0077 at 77.047 kb on + strand, within Dshi_0078 at 77.057 kb on + strand, within Dshi_0078 at 77.155 kb on - strand, within Dshi_0078 at 77.196 kb on - strand, within Dshi_0078 at 77.219 kb on - strand, within Dshi_0078 at 77.294 kb on + strand, within Dshi_0078 at 77.341 kb on + strand, within Dshi_0078 at 77.478 kb on + strand, within Dshi_0078 at 77.483 kb on + strand at 77.483 kb on + strand at 77.483 kb on + strand at 77.483 kb on + strand at 77.491 kb on - strand at 77.491 kb on - strand at 77.498 kb on + strand at 77.602 kb on - strand at 77.633 kb on - strand at 77.655 kb on - strand at 77.655 kb on - strand at 77.655 kb on - strand at 77.683 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 200 mM remove 75,102 + -0.0 75,119 + +0.0 75,191 - Dshi_0075 0.23 +2.3 75,246 + Dshi_0075 0.45 -0.3 75,246 + Dshi_0075 0.45 -0.8 75,259 - Dshi_0075 0.51 -0.5 75,278 - Dshi_0075 0.58 +0.0 75,293 - Dshi_0075 0.65 -0.5 75,333 - Dshi_0075 0.81 -0.6 75,411 - +0.2 75,418 - +0.5 75,421 - +0.6 75,451 + +1.3 75,459 - +0.2 75,502 - +0.1 75,508 + -0.9 75,508 + +0.3 75,508 + -0.6 75,508 + +1.4 75,553 + -0.1 75,575 + +0.4 75,583 - +0.4 75,685 - +0.1 75,807 + Dshi_0076 0.15 -0.1 75,832 + Dshi_0076 0.26 +0.4 75,837 + Dshi_0076 0.28 +0.4 75,840 - Dshi_0076 0.29 +0.7 75,845 - Dshi_0076 0.31 +1.0 75,894 - Dshi_0076 0.52 -0.6 75,965 - Dshi_0076 0.82 +0.7 76,123 + Dshi_0077 0.12 -0.6 76,381 - Dshi_0077 0.41 -0.6 76,439 - Dshi_0077 0.47 +1.4 76,484 - Dshi_0077 0.52 -0.1 76,551 + Dshi_0077 0.60 -1.9 76,819 - Dshi_0077 0.90 -0.9 77,047 + Dshi_0078 0.16 +0.4 77,057 + Dshi_0078 0.18 -0.0 77,155 - Dshi_0078 0.35 +0.9 77,196 - Dshi_0078 0.42 -0.2 77,219 - Dshi_0078 0.45 -0.4 77,294 + Dshi_0078 0.58 +0.1 77,341 + Dshi_0078 0.66 +0.8 77,478 + Dshi_0078 0.90 -1.6 77,483 + +0.5 77,483 + +0.1 77,483 + +0.3 77,483 + -0.6 77,491 - +0.4 77,491 - +0.0 77,498 + -0.3 77,602 - -1.1 77,633 - -0.6 77,655 - -0.3 77,655 - +0.9 77,655 - -0.0 77,683 + +0.4
Or see this region's nucleotide sequence