Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0151

Experiment: MoLS4 with Casaminos 0.05%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0149 and DVU0150 are separated by 21 nucleotidesDVU0150 and DVU0151 are separated by 319 nucleotidesDVU0151 and ppsA are separated by 69 nucleotides DVU0149: DVU0149 - membrane protein, putative (TIGR), at 182,353 to 183,405 DVU0149 DVU0150: DVU0150 - membrane protein, putative (TIGR), at 183,427 to 183,723 DVU0150 DVU0151: DVU0151 - HAMP domain/sigma-54 interaction domain protein (TIGR), at 184,043 to 186,916 DVU0151 DVU0152: ppsA - phosphoenolpyruvate synthase-related protein (TIGR), at 186,986 to 189,547 ppsA Position (kb) 184 185 186 187Strain fitness (log2 ratio) -2 -1 0 1at 183.063 kb on + strand, within DVU0149at 183.081 kb on - strand, within DVU0149at 183.126 kb on - strand, within DVU0149at 183.199 kb on - strand, within DVU0149at 183.209 kb on + strand, within DVU0149at 183.335 kb on - strandat 183.459 kb on - strand, within DVU0150at 183.532 kb on + strand, within DVU0150at 183.533 kb on - strand, within DVU0150at 183.607 kb on - strand, within DVU0150at 183.710 kb on + strandat 183.767 kb on + strandat 183.767 kb on + strandat 184.078 kb on + strandat 184.086 kb on - strandat 184.095 kb on + strandat 184.111 kb on - strandat 184.209 kb on - strandat 184.229 kb on + strandat 184.229 kb on + strandat 184.237 kb on - strandat 184.354 kb on - strand, within DVU0151at 184.363 kb on + strand, within DVU0151at 184.363 kb on + strand, within DVU0151at 184.371 kb on - strand, within DVU0151at 184.375 kb on + strand, within DVU0151at 184.399 kb on + strand, within DVU0151at 184.432 kb on + strand, within DVU0151at 184.432 kb on + strand, within DVU0151at 184.440 kb on - strand, within DVU0151at 184.440 kb on - strand, within DVU0151at 184.440 kb on - strand, within DVU0151at 184.440 kb on - strand, within DVU0151at 184.451 kb on - strand, within DVU0151at 184.456 kb on + strand, within DVU0151at 184.464 kb on - strand, within DVU0151at 184.471 kb on - strand, within DVU0151at 184.475 kb on + strand, within DVU0151at 184.659 kb on - strand, within DVU0151at 184.678 kb on - strand, within DVU0151at 184.818 kb on - strand, within DVU0151at 184.824 kb on + strand, within DVU0151at 184.834 kb on + strand, within DVU0151at 184.834 kb on + strand, within DVU0151at 184.891 kb on - strand, within DVU0151at 184.898 kb on + strand, within DVU0151at 184.898 kb on + strand, within DVU0151at 184.898 kb on + strand, within DVU0151at 184.898 kb on + strand, within DVU0151at 184.939 kb on + strand, within DVU0151at 184.979 kb on + strand, within DVU0151at 184.987 kb on - strand, within DVU0151at 185.043 kb on + strand, within DVU0151at 185.178 kb on + strand, within DVU0151at 185.186 kb on - strand, within DVU0151at 185.186 kb on - strand, within DVU0151at 185.287 kb on + strand, within DVU0151at 185.350 kb on - strand, within DVU0151at 185.376 kb on - strand, within DVU0151at 185.614 kb on + strand, within DVU0151at 185.725 kb on + strand, within DVU0151at 185.725 kb on + strand, within DVU0151at 185.795 kb on - strand, within DVU0151at 185.839 kb on - strand, within DVU0151at 185.980 kb on + strand, within DVU0151at 185.991 kb on - strand, within DVU0151at 186.119 kb on + strand, within DVU0151at 186.121 kb on + strand, within DVU0151at 186.141 kb on + strand, within DVU0151at 186.141 kb on + strand, within DVU0151at 186.141 kb on + strand, within DVU0151at 186.149 kb on - strand, within DVU0151at 186.176 kb on + strand, within DVU0151at 186.271 kb on - strand, within DVU0151at 186.296 kb on - strand, within DVU0151at 186.384 kb on + strand, within DVU0151at 186.384 kb on + strand, within DVU0151at 186.384 kb on + strand, within DVU0151at 186.389 kb on + strand, within DVU0151at 186.389 kb on + strand, within DVU0151at 186.389 kb on + strand, within DVU0151at 186.394 kb on + strand, within DVU0151at 186.397 kb on - strand, within DVU0151at 186.397 kb on - strand, within DVU0151at 186.403 kb on + strand, within DVU0151at 186.419 kb on + strand, within DVU0151at 186.608 kb on - strand, within DVU0151at 186.754 kb on + strandat 186.795 kb on - strandat 186.843 kb on + strandat 186.886 kb on - strandat 186.945 kb on - strandat 187.039 kb on - strandat 187.039 kb on - strandat 187.107 kb on - strandat 187.107 kb on - strandat 187.107 kb on - strandat 187.107 kb on - strandat 187.136 kb on + strandat 187.136 kb on + strandat 187.172 kb on + strandat 187.204 kb on + strandat 187.277 kb on + strand, within ppsAat 187.376 kb on + strand, within ppsAat 187.582 kb on + strand, within ppsAat 187.687 kb on + strand, within ppsAat 187.693 kb on - strand, within ppsAat 187.732 kb on + strand, within ppsAat 187.735 kb on - strand, within ppsAat 187.740 kb on - strand, within ppsAat 187.740 kb on - strand, within ppsAat 187.740 kb on - strand, within ppsAat 187.742 kb on + strand, within ppsAat 187.750 kb on - strand, within ppsAat 187.787 kb on + strand, within ppsAat 187.787 kb on + strand, within ppsAat 187.873 kb on - strand, within ppsAat 187.883 kb on - strand, within ppsA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Casaminos 0.05%
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183,063 + DVU0149 0.67 -0.0
183,081 - DVU0149 0.69 -0.5
183,126 - DVU0149 0.73 -0.4
183,199 - DVU0149 0.80 +0.1
183,209 + DVU0149 0.81 -1.8
183,335 - -0.3
183,459 - DVU0150 0.11 -2.1
183,532 + DVU0150 0.35 -0.0
183,533 - DVU0150 0.36 +0.1
183,607 - DVU0150 0.61 +0.1
183,710 + -0.1
183,767 + -0.3
183,767 + +0.1
184,078 + +0.0
184,086 - -0.7
184,095 + -1.0
184,111 - +0.4
184,209 - -0.1
184,229 + -1.1
184,229 + -0.6
184,237 - -0.5
184,354 - DVU0151 0.11 +0.0
184,363 + DVU0151 0.11 -1.7
184,363 + DVU0151 0.11 -0.8
184,371 - DVU0151 0.11 +0.1
184,375 + DVU0151 0.12 -0.1
184,399 + DVU0151 0.12 -0.4
184,432 + DVU0151 0.14 -0.6
184,432 + DVU0151 0.14 -0.6
184,440 - DVU0151 0.14 -1.1
184,440 - DVU0151 0.14 +0.0
184,440 - DVU0151 0.14 -0.3
184,440 - DVU0151 0.14 -1.5
184,451 - DVU0151 0.14 -0.4
184,456 + DVU0151 0.14 -0.9
184,464 - DVU0151 0.15 -0.4
184,471 - DVU0151 0.15 +0.0
184,475 + DVU0151 0.15 -0.1
184,659 - DVU0151 0.21 -2.0
184,678 - DVU0151 0.22 -0.5
184,818 - DVU0151 0.27 -0.2
184,824 + DVU0151 0.27 -0.8
184,834 + DVU0151 0.28 -0.1
184,834 + DVU0151 0.28 -0.7
184,891 - DVU0151 0.30 -1.7
184,898 + DVU0151 0.30 -0.3
184,898 + DVU0151 0.30 -0.2
184,898 + DVU0151 0.30 -0.1
184,898 + DVU0151 0.30 -0.0
184,939 + DVU0151 0.31 -0.2
184,979 + DVU0151 0.33 -0.9
184,987 - DVU0151 0.33 -0.1
185,043 + DVU0151 0.35 -0.3
185,178 + DVU0151 0.39 -0.4
185,186 - DVU0151 0.40 -0.8
185,186 - DVU0151 0.40 -1.4
185,287 + DVU0151 0.43 -1.9
185,350 - DVU0151 0.45 +1.1
185,376 - DVU0151 0.46 +0.4
185,614 + DVU0151 0.55 -1.0
185,725 + DVU0151 0.59 -0.7
185,725 + DVU0151 0.59 -0.4
185,795 - DVU0151 0.61 +0.1
185,839 - DVU0151 0.62 -1.0
185,980 + DVU0151 0.67 -1.0
185,991 - DVU0151 0.68 +0.0
186,119 + DVU0151 0.72 -0.3
186,121 + DVU0151 0.72 -0.4
186,141 + DVU0151 0.73 -0.2
186,141 + DVU0151 0.73 -0.8
186,141 + DVU0151 0.73 -2.2
186,149 - DVU0151 0.73 +0.0
186,176 + DVU0151 0.74 -0.4
186,271 - DVU0151 0.78 -1.5
186,296 - DVU0151 0.78 -1.1
186,384 + DVU0151 0.81 +0.5
186,384 + DVU0151 0.81 -0.2
186,384 + DVU0151 0.81 -0.5
186,389 + DVU0151 0.82 +0.0
186,389 + DVU0151 0.82 -0.2
186,389 + DVU0151 0.82 -1.5
186,394 + DVU0151 0.82 -1.6
186,397 - DVU0151 0.82 -0.4
186,397 - DVU0151 0.82 +0.7
186,403 + DVU0151 0.82 +0.1
186,419 + DVU0151 0.83 -0.2
186,608 - DVU0151 0.89 -0.6
186,754 + -0.9
186,795 - -0.2
186,843 + -0.3
186,886 - +0.8
186,945 - +0.3
187,039 - -0.1
187,039 - -1.5
187,107 - -0.5
187,107 - -0.1
187,107 - -2.1
187,107 - +0.0
187,136 + +0.2
187,136 + -0.2
187,172 + +0.5
187,204 + -0.2
187,277 + ppsA DVU0152 0.11 -0.9
187,376 + ppsA DVU0152 0.15 -1.2
187,582 + ppsA DVU0152 0.23 +0.1
187,687 + ppsA DVU0152 0.27 +0.1
187,693 - ppsA DVU0152 0.28 -0.2
187,732 + ppsA DVU0152 0.29 -0.3
187,735 - ppsA DVU0152 0.29 +0.7
187,740 - ppsA DVU0152 0.29 -0.0
187,740 - ppsA DVU0152 0.29 -0.3
187,740 - ppsA DVU0152 0.29 -0.4
187,742 + ppsA DVU0152 0.30 +0.2
187,750 - ppsA DVU0152 0.30 -0.2
187,787 + ppsA DVU0152 0.31 -0.7
187,787 + ppsA DVU0152 0.31 -2.4
187,873 - ppsA DVU0152 0.35 +0.2
187,883 - ppsA DVU0152 0.35 +0.0

Or see this region's nucleotide sequence