Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06305

Experiment: Formate N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS06300 and MMJJ_RS06305 are separated by 24 nucleotidesMMJJ_RS06305 and MMJJ_RS06310 are separated by 4 nucleotidesMMJJ_RS06310 and MMJJ_RS06315 are separated by 16 nucleotides MMJJ_RS06300: MMJJ_RS06300 - tetrahydromethanopterin S-methyltransferase subunit H, at 1,168,125 to 1,169,084 _RS06300 MMJJ_RS06305: MMJJ_RS06305 - tetrahydromethanopterin S-methyltransferase subunit G, at 1,169,109 to 1,169,333 _RS06305 MMJJ_RS06310: MMJJ_RS06310 - tetrahydromethanopterin S-methyltransferase subunit A, at 1,169,338 to 1,170,099 _RS06310 MMJJ_RS06315: MMJJ_RS06315 - tetrahydromethanopterin S-methyltransferase subunit A, at 1,170,116 to 1,170,835 _RS06315 Position (kb) 1169 1170Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1168.123 kb on + strandat 1168.127 kb on + strandat 1168.127 kb on + strandat 1168.285 kb on + strand, within MMJJ_RS06300at 1168.592 kb on - strand, within MMJJ_RS06300

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine
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1,168,123 + -1.0
1,168,127 + +0.6
1,168,127 + -3.8
1,168,285 + MMJJ_RS06300 0.17 +0.2
1,168,592 - MMJJ_RS06300 0.49 -1.7

Or see this region's nucleotide sequence