Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04525

Experiment: Formate N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04520 and MMJJ_RS04525 are separated by 81 nucleotidesMMJJ_RS04525 and MMJJ_RS04530 are separated by 2 nucleotidesMMJJ_RS04530 and MMJJ_RS04535 are separated by 3 nucleotides MMJJ_RS04520: MMJJ_RS04520 - coenzyme F430 synthase, at 843,922 to 845,124 _RS04520 MMJJ_RS04525: MMJJ_RS04525 - hypothetical protein, at 845,206 to 845,490 _RS04525 MMJJ_RS04530: MMJJ_RS04530 - iron export ABC transporter permease subunit FetB, at 845,493 to 846,239 _RS04530 MMJJ_RS04535: MMJJ_RS04535 - coenzyme gamma-F420-2:alpha-L-glutamate ligase, at 846,243 to 847,100 _RS04535 Position (kb) 845 846Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 844.295 kb on + strand, within MMJJ_RS04520at 844.316 kb on - strand, within MMJJ_RS04520at 844.324 kb on - strand, within MMJJ_RS04520at 844.324 kb on - strand, within MMJJ_RS04520at 844.324 kb on - strandat 844.325 kb on + strand, within MMJJ_RS04520at 844.558 kb on + strand, within MMJJ_RS04520at 844.575 kb on + strand, within MMJJ_RS04520at 844.690 kb on - strand, within MMJJ_RS04520at 844.729 kb on + strand, within MMJJ_RS04520at 844.732 kb on + strand, within MMJJ_RS04520at 844.786 kb on + strand, within MMJJ_RS04520at 844.935 kb on + strand, within MMJJ_RS04520at 845.092 kb on - strandat 845.147 kb on + strandat 845.163 kb on - strandat 845.213 kb on - strandat 845.213 kb on - strandat 845.213 kb on - strandat 845.213 kb on - strandat 845.213 kb on - strandat 845.213 kb on - strandat 845.214 kb on + strandat 845.214 kb on + strandat 845.214 kb on + strandat 845.228 kb on - strandat 845.231 kb on - strandat 845.231 kb on - strandat 845.231 kb on - strandat 845.232 kb on + strandat 845.236 kb on + strand, within MMJJ_RS04525at 845.238 kb on - strand, within MMJJ_RS04525at 845.238 kb on - strand, within MMJJ_RS04525at 845.239 kb on + strand, within MMJJ_RS04525at 845.359 kb on + strand, within MMJJ_RS04525at 845.385 kb on - strand, within MMJJ_RS04525at 845.468 kb on - strandat 845.513 kb on - strandat 845.514 kb on + strandat 845.525 kb on + strandat 845.533 kb on - strandat 845.561 kb on - strandat 845.562 kb on + strandat 845.585 kb on - strand, within MMJJ_RS04530at 845.585 kb on - strand, within MMJJ_RS04530at 845.585 kb on - strand, within MMJJ_RS04530at 845.585 kb on - strand, within MMJJ_RS04530at 845.585 kb on - strand, within MMJJ_RS04530at 845.586 kb on + strand, within MMJJ_RS04530at 845.586 kb on + strand, within MMJJ_RS04530at 845.586 kb on + strand, within MMJJ_RS04530at 845.590 kb on + strand, within MMJJ_RS04530at 845.611 kb on + strand, within MMJJ_RS04530at 845.657 kb on - strand, within MMJJ_RS04530at 845.658 kb on + strand, within MMJJ_RS04530at 845.689 kb on + strand, within MMJJ_RS04530at 845.733 kb on + strand, within MMJJ_RS04530at 845.826 kb on - strand, within MMJJ_RS04530at 845.828 kb on - strand, within MMJJ_RS04530at 845.829 kb on + strand, within MMJJ_RS04530at 845.877 kb on - strand, within MMJJ_RS04530at 845.878 kb on + strand, within MMJJ_RS04530at 845.895 kb on - strand, within MMJJ_RS04530at 845.895 kb on - strand, within MMJJ_RS04530at 845.895 kb on - strand, within MMJJ_RS04530at 845.946 kb on + strand, within MMJJ_RS04530at 845.970 kb on - strand, within MMJJ_RS04530at 845.970 kb on - strand, within MMJJ_RS04530at 845.970 kb on - strand, within MMJJ_RS04530at 845.973 kb on - strand, within MMJJ_RS04530at 846.039 kb on - strand, within MMJJ_RS04530at 846.040 kb on + strand, within MMJJ_RS04530at 846.043 kb on + strand, within MMJJ_RS04530at 846.043 kb on + strand, within MMJJ_RS04530at 846.047 kb on - strand, within MMJJ_RS04530at 846.047 kb on - strand, within MMJJ_RS04530at 846.048 kb on + strand, within MMJJ_RS04530at 846.074 kb on - strand, within MMJJ_RS04530at 846.141 kb on - strand, within MMJJ_RS04530at 846.142 kb on + strand, within MMJJ_RS04530at 846.180 kb on - strandat 846.180 kb on - strandat 846.262 kb on + strandat 846.349 kb on - strand, within MMJJ_RS04535at 846.349 kb on - strand, within MMJJ_RS04535at 846.350 kb on + strand, within MMJJ_RS04535at 846.350 kb on + strand, within MMJJ_RS04535at 846.350 kb on + strand, within MMJJ_RS04535at 846.352 kb on - strand, within MMJJ_RS04535at 846.352 kb on - strand, within MMJJ_RS04535at 846.353 kb on + strand, within MMJJ_RS04535at 846.389 kb on - strand, within MMJJ_RS04535at 846.389 kb on - strand, within MMJJ_RS04535at 846.389 kb on - strand, within MMJJ_RS04535at 846.390 kb on + strand, within MMJJ_RS04535at 846.390 kb on + strand, within MMJJ_RS04535at 846.390 kb on + strand, within MMJJ_RS04535at 846.444 kb on - strand, within MMJJ_RS04535at 846.445 kb on + strand, within MMJJ_RS04535at 846.475 kb on - strand, within MMJJ_RS04535at 846.475 kb on - strand, within MMJJ_RS04535at 846.475 kb on - strand, within MMJJ_RS04535at 846.476 kb on + strand, within MMJJ_RS04535at 846.477 kb on - strand, within MMJJ_RS04535at 846.477 kb on - strand, within MMJJ_RS04535at 846.477 kb on - strand, within MMJJ_RS04535at 846.477 kb on - strand, within MMJJ_RS04535at 846.477 kb on - strand, within MMJJ_RS04535at 846.478 kb on + strand, within MMJJ_RS04535at 846.478 kb on + strand, within MMJJ_RS04535at 846.478 kb on + strand, within MMJJ_RS04535at 846.478 kb on + strand, within MMJJ_RS04535

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine
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844,295 + MMJJ_RS04520 0.31 -0.6
844,316 - MMJJ_RS04520 0.33 -2.0
844,324 - MMJJ_RS04520 0.33 -1.9
844,324 - MMJJ_RS04520 0.33 -3.1
844,324 - +0.3
844,325 + MMJJ_RS04520 0.33 -2.4
844,558 + MMJJ_RS04520 0.53 -1.0
844,575 + MMJJ_RS04520 0.54 -1.3
844,690 - MMJJ_RS04520 0.64 -2.0
844,729 + MMJJ_RS04520 0.67 -0.9
844,732 + MMJJ_RS04520 0.67 -2.9
844,786 + MMJJ_RS04520 0.72 -0.9
844,935 + MMJJ_RS04520 0.84 -1.8
845,092 - -3.1
845,147 + +1.6
845,163 - -2.0
845,213 - -1.9
845,213 - +1.6
845,213 - -0.9
845,213 - +0.2
845,213 - -1.9
845,213 - -1.4
845,214 + +2.2
845,214 + -1.5
845,214 + -0.9
845,228 - -0.2
845,231 - -0.9
845,231 - -0.3
845,231 - -0.4
845,232 + +0.8
845,236 + MMJJ_RS04525 0.11 -1.7
845,238 - MMJJ_RS04525 0.11 +1.2
845,238 - MMJJ_RS04525 0.11 +1.2
845,239 + MMJJ_RS04525 0.12 +3.7
845,359 + MMJJ_RS04525 0.54 +2.4
845,385 - MMJJ_RS04525 0.63 +1.4
845,468 - -0.3
845,513 - +0.2
845,514 + -0.8
845,525 + +0.3
845,533 - -3.2
845,561 - -0.7
845,562 + -0.1
845,585 - MMJJ_RS04530 0.12 +0.3
845,585 - MMJJ_RS04530 0.12 -2.6
845,585 - MMJJ_RS04530 0.12 +1.8
845,585 - MMJJ_RS04530 0.12 -2.7
845,585 - MMJJ_RS04530 0.12 -0.5
845,586 + MMJJ_RS04530 0.12 -0.4
845,586 + MMJJ_RS04530 0.12 +1.3
845,586 + MMJJ_RS04530 0.12 +1.6
845,590 + MMJJ_RS04530 0.13 +2.4
845,611 + MMJJ_RS04530 0.16 +0.7
845,657 - MMJJ_RS04530 0.22 +0.7
845,658 + MMJJ_RS04530 0.22 +3.2
845,689 + MMJJ_RS04530 0.26 -0.8
845,733 + MMJJ_RS04530 0.32 -0.4
845,826 - MMJJ_RS04530 0.45 -1.3
845,828 - MMJJ_RS04530 0.45 -1.1
845,829 + MMJJ_RS04530 0.45 +1.0
845,877 - MMJJ_RS04530 0.51 -2.4
845,878 + MMJJ_RS04530 0.52 +1.1
845,895 - MMJJ_RS04530 0.54 -2.3
845,895 - MMJJ_RS04530 0.54 -2.5
845,895 - MMJJ_RS04530 0.54 -3.4
845,946 + MMJJ_RS04530 0.61 -3.5
845,970 - MMJJ_RS04530 0.64 -0.0
845,970 - MMJJ_RS04530 0.64 -1.1
845,970 - MMJJ_RS04530 0.64 +0.5
845,973 - MMJJ_RS04530 0.64 +1.8
846,039 - MMJJ_RS04530 0.73 -2.1
846,040 + MMJJ_RS04530 0.73 +0.1
846,043 + MMJJ_RS04530 0.74 -3.4
846,043 + MMJJ_RS04530 0.74 +0.2
846,047 - MMJJ_RS04530 0.74 +0.3
846,047 - MMJJ_RS04530 0.74 +0.7
846,048 + MMJJ_RS04530 0.74 -0.5
846,074 - MMJJ_RS04530 0.78 -1.4
846,141 - MMJJ_RS04530 0.87 +0.6
846,142 + MMJJ_RS04530 0.87 -0.3
846,180 - +1.5
846,180 - -1.5
846,262 + +0.3
846,349 - MMJJ_RS04535 0.12 +1.4
846,349 - MMJJ_RS04535 0.12 -1.5
846,350 + MMJJ_RS04535 0.12 -1.4
846,350 + MMJJ_RS04535 0.12 +1.6
846,350 + MMJJ_RS04535 0.12 +0.1
846,352 - MMJJ_RS04535 0.13 +1.9
846,352 - MMJJ_RS04535 0.13 -0.2
846,353 + MMJJ_RS04535 0.13 +0.0
846,389 - MMJJ_RS04535 0.17 -1.0
846,389 - MMJJ_RS04535 0.17 +1.9
846,389 - MMJJ_RS04535 0.17 +2.6
846,390 + MMJJ_RS04535 0.17 +3.3
846,390 + MMJJ_RS04535 0.17 -4.5
846,390 + MMJJ_RS04535 0.17 +1.2
846,444 - MMJJ_RS04535 0.23 -0.7
846,445 + MMJJ_RS04535 0.24 -1.8
846,475 - MMJJ_RS04535 0.27 -0.0
846,475 - MMJJ_RS04535 0.27 +1.1
846,475 - MMJJ_RS04535 0.27 +0.9
846,476 + MMJJ_RS04535 0.27 -1.5
846,477 - MMJJ_RS04535 0.27 +0.4
846,477 - MMJJ_RS04535 0.27 -3.7
846,477 - MMJJ_RS04535 0.27 -1.0
846,477 - MMJJ_RS04535 0.27 +2.4
846,477 - MMJJ_RS04535 0.27 +1.7
846,478 + MMJJ_RS04535 0.27 +3.5
846,478 + MMJJ_RS04535 0.27 -2.3
846,478 + MMJJ_RS04535 0.27 +3.9
846,478 + MMJJ_RS04535 0.27 +1.9

Or see this region's nucleotide sequence