Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00855

Experiment: Formate N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS00850 and MMJJ_RS00855 are separated by 46 nucleotidesMMJJ_RS00855 and MMJJ_RS00860 are separated by 90 nucleotides MMJJ_RS00850: MMJJ_RS00850 - formylmethanofuran dehydrogenase subunit B, at 161,068 to 162,372 _RS00850 MMJJ_RS00855: MMJJ_RS00855 - CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein, at 162,419 to 164,383 _RS00855 MMJJ_RS00860: MMJJ_RS00860 - 4Fe-4S binding protein, at 164,474 to 165,667 _RS00860 Position (kb) 162 163 164 165Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 161.430 kb on + strand, within MMJJ_RS00850at 161.485 kb on - strand, within MMJJ_RS00850at 161.485 kb on - strand, within MMJJ_RS00850at 161.486 kb on + strand, within MMJJ_RS00850at 161.492 kb on - strand, within MMJJ_RS00850at 161.492 kb on - strand, within MMJJ_RS00850at 161.493 kb on + strand, within MMJJ_RS00850at 161.575 kb on + strand, within MMJJ_RS00850at 161.589 kb on - strand, within MMJJ_RS00850at 161.657 kb on - strand, within MMJJ_RS00850at 161.657 kb on - strand, within MMJJ_RS00850at 161.657 kb on - strand, within MMJJ_RS00850at 161.657 kb on - strand, within MMJJ_RS00850at 161.658 kb on + strand, within MMJJ_RS00850at 161.658 kb on + strand, within MMJJ_RS00850at 161.658 kb on + strand, within MMJJ_RS00850at 161.660 kb on + strand, within MMJJ_RS00850at 161.687 kb on + strand, within MMJJ_RS00850at 161.734 kb on - strand, within MMJJ_RS00850at 161.734 kb on - strand, within MMJJ_RS00850at 161.734 kb on - strand, within MMJJ_RS00850at 161.735 kb on + strand, within MMJJ_RS00850at 161.735 kb on + strand, within MMJJ_RS00850at 161.736 kb on - strand, within MMJJ_RS00850at 161.736 kb on - strand, within MMJJ_RS00850at 161.736 kb on - strand, within MMJJ_RS00850at 161.736 kb on - strand, within MMJJ_RS00850at 161.744 kb on - strand, within MMJJ_RS00850at 161.745 kb on + strand, within MMJJ_RS00850at 161.752 kb on + strand, within MMJJ_RS00850at 161.783 kb on + strand, within MMJJ_RS00850at 161.815 kb on - strand, within MMJJ_RS00850at 161.815 kb on - strand, within MMJJ_RS00850at 161.816 kb on + strand, within MMJJ_RS00850at 161.821 kb on - strand, within MMJJ_RS00850at 161.821 kb on - strand, within MMJJ_RS00850at 161.925 kb on + strand, within MMJJ_RS00850at 161.929 kb on - strand, within MMJJ_RS00850at 161.964 kb on - strand, within MMJJ_RS00850at 161.964 kb on - strand, within MMJJ_RS00850at 161.964 kb on - strand, within MMJJ_RS00850at 161.965 kb on + strand, within MMJJ_RS00850at 161.969 kb on + strand, within MMJJ_RS00850at 161.969 kb on + strand, within MMJJ_RS00850at 161.969 kb on + strand, within MMJJ_RS00850at 161.969 kb on + strand, within MMJJ_RS00850at 161.998 kb on - strand, within MMJJ_RS00850at 161.998 kb on - strand, within MMJJ_RS00850at 162.016 kb on - strand, within MMJJ_RS00850at 162.016 kb on - strand, within MMJJ_RS00850at 162.034 kb on - strand, within MMJJ_RS00850at 162.034 kb on - strand, within MMJJ_RS00850at 162.034 kb on - strand, within MMJJ_RS00850at 162.034 kb on - strand, within MMJJ_RS00850at 162.034 kb on - strand, within MMJJ_RS00850at 162.035 kb on + strand, within MMJJ_RS00850at 162.066 kb on - strand, within MMJJ_RS00850at 162.076 kb on + strand, within MMJJ_RS00850at 162.111 kb on - strand, within MMJJ_RS00850at 162.111 kb on - strand, within MMJJ_RS00850at 162.226 kb on - strand, within MMJJ_RS00850at 162.286 kb on - strandat 162.287 kb on + strandat 162.292 kb on + strandat 162.292 kb on + strandat 162.350 kb on + strandat 162.350 kb on + strandat 162.352 kb on - strandat 162.364 kb on + strandat 162.373 kb on - strandat 162.374 kb on + strandat 162.459 kb on + strandat 162.532 kb on - strandat 162.533 kb on + strandat 162.533 kb on + strandat 162.533 kb on + strandat 162.558 kb on + strandat 162.611 kb on - strandat 162.620 kb on + strand, within MMJJ_RS00855at 162.654 kb on + strand, within MMJJ_RS00855at 162.661 kb on - strand, within MMJJ_RS00855at 162.662 kb on + strand, within MMJJ_RS00855at 162.696 kb on + strand, within MMJJ_RS00855at 162.696 kb on + strand, within MMJJ_RS00855at 162.745 kb on - strand, within MMJJ_RS00855at 162.777 kb on - strand, within MMJJ_RS00855at 162.777 kb on - strand, within MMJJ_RS00855at 162.777 kb on - strand, within MMJJ_RS00855at 162.777 kb on - strand, within MMJJ_RS00855at 162.778 kb on + strand, within MMJJ_RS00855at 162.778 kb on + strand, within MMJJ_RS00855at 162.778 kb on + strand, within MMJJ_RS00855at 162.810 kb on + strand, within MMJJ_RS00855at 162.814 kb on - strand, within MMJJ_RS00855at 162.901 kb on - strand, within MMJJ_RS00855at 162.901 kb on - strand, within MMJJ_RS00855at 162.901 kb on - strand, within MMJJ_RS00855at 162.901 kb on - strand, within MMJJ_RS00855at 162.906 kb on + strand, within MMJJ_RS00855at 162.920 kb on - strand, within MMJJ_RS00855at 162.921 kb on + strand, within MMJJ_RS00855at 162.921 kb on + strand, within MMJJ_RS00855at 162.921 kb on + strand, within MMJJ_RS00855at 162.974 kb on - strand, within MMJJ_RS00855at 162.997 kb on - strand, within MMJJ_RS00855at 163.005 kb on + strand, within MMJJ_RS00855at 163.005 kb on + strand, within MMJJ_RS00855at 163.104 kb on - strand, within MMJJ_RS00855at 163.105 kb on + strand, within MMJJ_RS00855at 163.107 kb on - strand, within MMJJ_RS00855at 163.108 kb on + strand, within MMJJ_RS00855at 163.108 kb on + strand, within MMJJ_RS00855at 163.167 kb on - strand, within MMJJ_RS00855at 163.167 kb on - strand, within MMJJ_RS00855at 163.168 kb on + strand, within MMJJ_RS00855at 163.168 kb on + strand, within MMJJ_RS00855at 163.171 kb on - strand, within MMJJ_RS00855at 163.171 kb on - strand, within MMJJ_RS00855at 163.171 kb on - strand, within MMJJ_RS00855at 163.172 kb on + strand, within MMJJ_RS00855at 163.172 kb on + strand, within MMJJ_RS00855at 163.178 kb on - strand, within MMJJ_RS00855at 163.179 kb on + strand, within MMJJ_RS00855at 163.395 kb on - strand, within MMJJ_RS00855at 163.396 kb on + strand, within MMJJ_RS00855at 163.401 kb on + strand, within MMJJ_RS00855at 163.418 kb on + strand, within MMJJ_RS00855at 163.455 kb on - strand, within MMJJ_RS00855at 163.561 kb on + strand, within MMJJ_RS00855at 163.610 kb on - strand, within MMJJ_RS00855at 163.611 kb on + strand, within MMJJ_RS00855at 163.612 kb on - strand, within MMJJ_RS00855at 163.612 kb on - strand, within MMJJ_RS00855at 163.613 kb on + strand, within MMJJ_RS00855at 163.613 kb on + strand, within MMJJ_RS00855at 163.613 kb on + strand, within MMJJ_RS00855at 163.613 kb on + strand, within MMJJ_RS00855at 163.619 kb on - strand, within MMJJ_RS00855at 163.619 kb on - strand, within MMJJ_RS00855at 163.619 kb on - strand, within MMJJ_RS00855at 163.619 kb on - strand, within MMJJ_RS00855at 163.620 kb on + strand, within MMJJ_RS00855at 163.620 kb on + strand, within MMJJ_RS00855at 163.665 kb on - strand, within MMJJ_RS00855at 163.666 kb on + strand, within MMJJ_RS00855at 163.708 kb on + strand, within MMJJ_RS00855at 163.716 kb on + strand, within MMJJ_RS00855at 163.750 kb on - strand, within MMJJ_RS00855at 163.751 kb on + strand, within MMJJ_RS00855at 163.829 kb on - strand, within MMJJ_RS00855at 163.830 kb on + strand, within MMJJ_RS00855at 163.974 kb on - strand, within MMJJ_RS00855at 163.975 kb on + strand, within MMJJ_RS00855at 164.132 kb on - strand, within MMJJ_RS00855at 164.133 kb on + strand, within MMJJ_RS00855at 164.133 kb on + strand, within MMJJ_RS00855at 164.144 kb on + strand, within MMJJ_RS00855at 164.150 kb on + strand, within MMJJ_RS00855at 164.187 kb on + strandat 164.306 kb on - strandat 164.465 kb on - strandat 164.465 kb on - strandat 164.465 kb on - strandat 164.466 kb on + strandat 164.486 kb on - strandat 164.487 kb on + strandat 164.501 kb on + strandat 164.501 kb on + strandat 164.522 kb on + strandat 164.538 kb on + strandat 164.577 kb on + strandat 164.609 kb on + strand, within MMJJ_RS00860at 164.738 kb on + strand, within MMJJ_RS00860at 164.835 kb on + strand, within MMJJ_RS00860at 164.853 kb on - strand, within MMJJ_RS00860at 164.960 kb on - strand, within MMJJ_RS00860at 164.960 kb on - strand, within MMJJ_RS00860at 164.961 kb on + strand, within MMJJ_RS00860at 165.008 kb on - strand, within MMJJ_RS00860at 165.018 kb on + strand, within MMJJ_RS00860at 165.062 kb on - strand, within MMJJ_RS00860at 165.062 kb on - strand, within MMJJ_RS00860at 165.063 kb on + strand, within MMJJ_RS00860at 165.063 kb on + strand, within MMJJ_RS00860at 165.092 kb on + strand, within MMJJ_RS00860at 165.166 kb on - strand, within MMJJ_RS00860at 165.171 kb on - strand, within MMJJ_RS00860at 165.172 kb on + strand, within MMJJ_RS00860at 165.172 kb on + strand, within MMJJ_RS00860at 165.174 kb on + strand, within MMJJ_RS00860at 165.174 kb on + strand, within MMJJ_RS00860at 165.176 kb on + strand, within MMJJ_RS00860at 165.244 kb on - strand, within MMJJ_RS00860at 165.244 kb on - strand, within MMJJ_RS00860at 165.245 kb on + strand, within MMJJ_RS00860at 165.245 kb on + strand, within MMJJ_RS00860at 165.248 kb on - strand, within MMJJ_RS00860at 165.301 kb on - strand, within MMJJ_RS00860at 165.326 kb on - strand, within MMJJ_RS00860at 165.326 kb on - strand, within MMJJ_RS00860at 165.345 kb on - strand, within MMJJ_RS00860

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine
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161,430 + MMJJ_RS00850 0.28 +1.6
161,485 - MMJJ_RS00850 0.32 -0.8
161,485 - MMJJ_RS00850 0.32 +0.5
161,486 + MMJJ_RS00850 0.32 -0.4
161,492 - MMJJ_RS00850 0.32 -1.0
161,492 - MMJJ_RS00850 0.32 +0.0
161,493 + MMJJ_RS00850 0.33 -1.9
161,575 + MMJJ_RS00850 0.39 +0.4
161,589 - MMJJ_RS00850 0.40 -0.4
161,657 - MMJJ_RS00850 0.45 -0.9
161,657 - MMJJ_RS00850 0.45 +2.9
161,657 - MMJJ_RS00850 0.45 -2.7
161,657 - MMJJ_RS00850 0.45 -0.1
161,658 + MMJJ_RS00850 0.45 -1.5
161,658 + MMJJ_RS00850 0.45 -2.5
161,658 + MMJJ_RS00850 0.45 +3.0
161,660 + MMJJ_RS00850 0.45 -0.4
161,687 + MMJJ_RS00850 0.47 +0.8
161,734 - MMJJ_RS00850 0.51 +0.8
161,734 - MMJJ_RS00850 0.51 -1.8
161,734 - MMJJ_RS00850 0.51 -0.8
161,735 + MMJJ_RS00850 0.51 -0.3
161,735 + MMJJ_RS00850 0.51 +1.0
161,736 - MMJJ_RS00850 0.51 +0.8
161,736 - MMJJ_RS00850 0.51 +2.7
161,736 - MMJJ_RS00850 0.51 +1.5
161,736 - MMJJ_RS00850 0.51 +2.8
161,744 - MMJJ_RS00850 0.52 +0.7
161,745 + MMJJ_RS00850 0.52 +0.3
161,752 + MMJJ_RS00850 0.52 -3.1
161,783 + MMJJ_RS00850 0.55 -1.7
161,815 - MMJJ_RS00850 0.57 +0.3
161,815 - MMJJ_RS00850 0.57 -0.5
161,816 + MMJJ_RS00850 0.57 +1.1
161,821 - MMJJ_RS00850 0.58 +0.8
161,821 - MMJJ_RS00850 0.58 -1.0
161,925 + MMJJ_RS00850 0.66 +1.6
161,929 - MMJJ_RS00850 0.66 -3.4
161,964 - MMJJ_RS00850 0.69 -0.6
161,964 - MMJJ_RS00850 0.69 -1.9
161,964 - MMJJ_RS00850 0.69 -1.0
161,965 + MMJJ_RS00850 0.69 -0.3
161,969 + MMJJ_RS00850 0.69 -1.9
161,969 + MMJJ_RS00850 0.69 +1.8
161,969 + MMJJ_RS00850 0.69 -0.3
161,969 + MMJJ_RS00850 0.69 +1.1
161,998 - MMJJ_RS00850 0.71 +2.1
161,998 - MMJJ_RS00850 0.71 -0.5
162,016 - MMJJ_RS00850 0.73 +1.2
162,016 - MMJJ_RS00850 0.73 -2.7
162,034 - MMJJ_RS00850 0.74 -0.6
162,034 - MMJJ_RS00850 0.74 +2.2
162,034 - MMJJ_RS00850 0.74 +3.3
162,034 - MMJJ_RS00850 0.74 +0.6
162,034 - MMJJ_RS00850 0.74 -0.2
162,035 + MMJJ_RS00850 0.74 -0.5
162,066 - MMJJ_RS00850 0.76 +1.8
162,076 + MMJJ_RS00850 0.77 +0.2
162,111 - MMJJ_RS00850 0.80 +2.4
162,111 - MMJJ_RS00850 0.80 +0.7
162,226 - MMJJ_RS00850 0.89 -1.3
162,286 - -3.1
162,287 + +0.9
162,292 + +1.7
162,292 + +1.8
162,350 + +1.3
162,350 + -1.5
162,352 - +1.0
162,364 + +1.4
162,373 - +0.4
162,374 + +0.2
162,459 + -0.7
162,532 - +0.8
162,533 + -1.1
162,533 + -0.3
162,533 + +1.7
162,558 + -2.4
162,611 - -1.0
162,620 + MMJJ_RS00855 0.10 +2.2
162,654 + MMJJ_RS00855 0.12 +2.9
162,661 - MMJJ_RS00855 0.12 -0.8
162,662 + MMJJ_RS00855 0.12 +2.2
162,696 + MMJJ_RS00855 0.14 +1.6
162,696 + MMJJ_RS00855 0.14 -0.9
162,745 - MMJJ_RS00855 0.17 +4.4
162,777 - MMJJ_RS00855 0.18 +2.5
162,777 - MMJJ_RS00855 0.18 +0.5
162,777 - MMJJ_RS00855 0.18 +1.6
162,777 - MMJJ_RS00855 0.18 -0.8
162,778 + MMJJ_RS00855 0.18 -1.4
162,778 + MMJJ_RS00855 0.18 +0.7
162,778 + MMJJ_RS00855 0.18 +0.7
162,810 + MMJJ_RS00855 0.20 -2.5
162,814 - MMJJ_RS00855 0.20 -0.3
162,901 - MMJJ_RS00855 0.25 +3.2
162,901 - MMJJ_RS00855 0.25 -0.3
162,901 - MMJJ_RS00855 0.25 +2.3
162,901 - MMJJ_RS00855 0.25 +0.5
162,906 + MMJJ_RS00855 0.25 -3.0
162,920 - MMJJ_RS00855 0.25 -4.7
162,921 + MMJJ_RS00855 0.26 -0.2
162,921 + MMJJ_RS00855 0.26 -2.0
162,921 + MMJJ_RS00855 0.26 +4.0
162,974 - MMJJ_RS00855 0.28 -0.1
162,997 - MMJJ_RS00855 0.29 +0.8
163,005 + MMJJ_RS00855 0.30 +0.4
163,005 + MMJJ_RS00855 0.30 +1.0
163,104 - MMJJ_RS00855 0.35 -0.9
163,105 + MMJJ_RS00855 0.35 +0.5
163,107 - MMJJ_RS00855 0.35 -1.0
163,108 + MMJJ_RS00855 0.35 -1.3
163,108 + MMJJ_RS00855 0.35 -0.8
163,167 - MMJJ_RS00855 0.38 -2.1
163,167 - MMJJ_RS00855 0.38 +0.2
163,168 + MMJJ_RS00855 0.38 -0.9
163,168 + MMJJ_RS00855 0.38 +0.7
163,171 - MMJJ_RS00855 0.38 +2.9
163,171 - MMJJ_RS00855 0.38 +1.8
163,171 - MMJJ_RS00855 0.38 +3.9
163,172 + MMJJ_RS00855 0.38 -0.3
163,172 + MMJJ_RS00855 0.38 -0.3
163,178 - MMJJ_RS00855 0.39 -0.7
163,179 + MMJJ_RS00855 0.39 -1.7
163,395 - MMJJ_RS00855 0.50 +1.4
163,396 + MMJJ_RS00855 0.50 +1.8
163,401 + MMJJ_RS00855 0.50 -0.0
163,418 + MMJJ_RS00855 0.51 +3.4
163,455 - MMJJ_RS00855 0.53 -0.5
163,561 + MMJJ_RS00855 0.58 +2.6
163,610 - MMJJ_RS00855 0.61 +0.3
163,611 + MMJJ_RS00855 0.61 +0.4
163,612 - MMJJ_RS00855 0.61 -1.2
163,612 - MMJJ_RS00855 0.61 -0.3
163,613 + MMJJ_RS00855 0.61 -4.2
163,613 + MMJJ_RS00855 0.61 +2.4
163,613 + MMJJ_RS00855 0.61 +4.5
163,613 + MMJJ_RS00855 0.61 -3.0
163,619 - MMJJ_RS00855 0.61 +2.6
163,619 - MMJJ_RS00855 0.61 -1.0
163,619 - MMJJ_RS00855 0.61 +0.9
163,619 - MMJJ_RS00855 0.61 -1.2
163,620 + MMJJ_RS00855 0.61 -0.8
163,620 + MMJJ_RS00855 0.61 -0.8
163,665 - MMJJ_RS00855 0.63 -0.6
163,666 + MMJJ_RS00855 0.63 +1.3
163,708 + MMJJ_RS00855 0.66 -2.7
163,716 + MMJJ_RS00855 0.66 +1.2
163,750 - MMJJ_RS00855 0.68 +2.2
163,751 + MMJJ_RS00855 0.68 -4.2
163,829 - MMJJ_RS00855 0.72 -1.6
163,830 + MMJJ_RS00855 0.72 +1.2
163,974 - MMJJ_RS00855 0.79 +1.5
163,975 + MMJJ_RS00855 0.79 +2.9
164,132 - MMJJ_RS00855 0.87 -1.1
164,133 + MMJJ_RS00855 0.87 +2.9
164,133 + MMJJ_RS00855 0.87 +0.3
164,144 + MMJJ_RS00855 0.88 +0.1
164,150 + MMJJ_RS00855 0.88 +0.4
164,187 + -0.5
164,306 - +3.1
164,465 - +3.3
164,465 - -0.8
164,465 - -0.5
164,466 + -2.0
164,486 - +1.2
164,487 + +2.2
164,501 + +1.5
164,501 + -0.4
164,522 + -1.8
164,538 + -0.8
164,577 + -3.0
164,609 + MMJJ_RS00860 0.11 +2.3
164,738 + MMJJ_RS00860 0.22 -1.3
164,835 + MMJJ_RS00860 0.30 -1.4
164,853 - MMJJ_RS00860 0.32 -1.7
164,960 - MMJJ_RS00860 0.41 -3.5
164,960 - MMJJ_RS00860 0.41 +3.2
164,961 + MMJJ_RS00860 0.41 +0.0
165,008 - MMJJ_RS00860 0.45 -0.1
165,018 + MMJJ_RS00860 0.46 +1.2
165,062 - MMJJ_RS00860 0.49 -1.8
165,062 - MMJJ_RS00860 0.49 -0.7
165,063 + MMJJ_RS00860 0.49 -1.1
165,063 + MMJJ_RS00860 0.49 -1.4
165,092 + MMJJ_RS00860 0.52 -1.1
165,166 - MMJJ_RS00860 0.58 +0.3
165,171 - MMJJ_RS00860 0.58 -0.2
165,172 + MMJJ_RS00860 0.58 +1.5
165,172 + MMJJ_RS00860 0.58 -0.5
165,174 + MMJJ_RS00860 0.59 +3.0
165,174 + MMJJ_RS00860 0.59 +0.2
165,176 + MMJJ_RS00860 0.59 +4.2
165,244 - MMJJ_RS00860 0.64 +2.9
165,244 - MMJJ_RS00860 0.64 +0.0
165,245 + MMJJ_RS00860 0.65 -0.5
165,245 + MMJJ_RS00860 0.65 -3.2
165,248 - MMJJ_RS00860 0.65 -1.2
165,301 - MMJJ_RS00860 0.69 -1.0
165,326 - MMJJ_RS00860 0.71 -0.4
165,326 - MMJJ_RS00860 0.71 +3.8
165,345 - MMJJ_RS00860 0.73 +1.6

Or see this region's nucleotide sequence