Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15120

Experiment: R2A with Chloride 250 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS15110 and LRK54_RS15115 are separated by 55 nucleotidesLRK54_RS15115 and LRK54_RS15120 are separated by 17 nucleotidesLRK54_RS15120 and LRK54_RS15125 are separated by 100 nucleotidesLRK54_RS15125 and LRK54_RS15130 are separated by 4 nucleotides LRK54_RS15110: LRK54_RS15110 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 3,337,469 to 3,337,948 _RS15110 LRK54_RS15115: LRK54_RS15115 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 3,338,004 to 3,338,834 _RS15115 LRK54_RS15120: LRK54_RS15120 - pantoate--beta-alanine ligase, at 3,338,852 to 3,339,697 _RS15120 LRK54_RS15125: LRK54_RS15125 - aspartate 1-decarboxylase, at 3,339,798 to 3,340,190 _RS15125 LRK54_RS15130: LRK54_RS15130 - tRNA epoxyqueuosine(34) reductase QueG, at 3,340,195 to 3,341,292 _RS15130 Position (kb) 3338 3339 3340Strain fitness (log2 ratio) -1 0 1 2 3at 3337.971 kb on + strandat 3338.007 kb on + strandat 3339.708 kb on + strandat 3339.756 kb on + strandat 3340.344 kb on - strand, within LRK54_RS15130at 3340.344 kb on - strand, within LRK54_RS15130at 3340.586 kb on + strand, within LRK54_RS15130at 3340.586 kb on + strand, within LRK54_RS15130at 3340.586 kb on + strand, within LRK54_RS15130at 3340.586 kb on + strand, within LRK54_RS15130at 3340.586 kb on + strand, within LRK54_RS15130at 3340.586 kb on + strand, within LRK54_RS15130at 3340.586 kb on + strand, within LRK54_RS15130at 3340.586 kb on + strand, within LRK54_RS15130at 3340.586 kb on + strand, within LRK54_RS15130at 3340.586 kb on + strand, within LRK54_RS15130at 3340.586 kb on + strand, within LRK54_RS15130at 3340.586 kb on + strand, within LRK54_RS15130at 3340.586 kb on + strand, within LRK54_RS15130at 3340.587 kb on - strand, within LRK54_RS15130at 3340.587 kb on - strand, within LRK54_RS15130at 3340.587 kb on - strand, within LRK54_RS15130at 3340.587 kb on - strand, within LRK54_RS15130at 3340.587 kb on - strand, within LRK54_RS15130at 3340.587 kb on - strand, within LRK54_RS15130at 3340.587 kb on - strand, within LRK54_RS15130at 3340.587 kb on - strand, within LRK54_RS15130at 3340.587 kb on - strand, within LRK54_RS15130at 3340.587 kb on - strand, within LRK54_RS15130at 3340.587 kb on - strand, within LRK54_RS15130at 3340.587 kb on - strand, within LRK54_RS15130at 3340.587 kb on - strand, within LRK54_RS15130at 3340.645 kb on + strand, within LRK54_RS15130at 3340.645 kb on + strand, within LRK54_RS15130at 3340.645 kb on + strand, within LRK54_RS15130at 3340.645 kb on + strand, within LRK54_RS15130at 3340.645 kb on + strand, within LRK54_RS15130at 3340.645 kb on + strand, within LRK54_RS15130at 3340.645 kb on + strand, within LRK54_RS15130at 3340.645 kb on + strand, within LRK54_RS15130at 3340.645 kb on + strand, within LRK54_RS15130at 3340.645 kb on + strand, within LRK54_RS15130at 3340.645 kb on + strand, within LRK54_RS15130at 3340.645 kb on + strand, within LRK54_RS15130at 3340.645 kb on + strand, within LRK54_RS15130at 3340.646 kb on - strand, within LRK54_RS15130at 3340.646 kb on - strand, within LRK54_RS15130at 3340.646 kb on - strand, within LRK54_RS15130at 3340.646 kb on - strand, within LRK54_RS15130at 3340.646 kb on - strand, within LRK54_RS15130at 3340.646 kb on - strand, within LRK54_RS15130at 3340.646 kb on - strand, within LRK54_RS15130at 3340.646 kb on - strand, within LRK54_RS15130at 3340.646 kb on - strand, within LRK54_RS15130

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chloride 250 mM
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3,337,971 + -0.2
3,338,007 + -0.1
3,339,708 + -0.3
3,339,756 + -0.1
3,340,344 - LRK54_RS15130 0.14 +0.7
3,340,344 - LRK54_RS15130 0.14 +0.5
3,340,586 + LRK54_RS15130 0.36 +1.7
3,340,586 + LRK54_RS15130 0.36 +0.2
3,340,586 + LRK54_RS15130 0.36 -0.3
3,340,586 + LRK54_RS15130 0.36 -0.0
3,340,586 + LRK54_RS15130 0.36 +0.7
3,340,586 + LRK54_RS15130 0.36 +1.9
3,340,586 + LRK54_RS15130 0.36 -0.3
3,340,586 + LRK54_RS15130 0.36 +3.6
3,340,586 + LRK54_RS15130 0.36 +1.0
3,340,586 + LRK54_RS15130 0.36 -0.8
3,340,586 + LRK54_RS15130 0.36 -0.5
3,340,586 + LRK54_RS15130 0.36 +0.3
3,340,586 + LRK54_RS15130 0.36 -0.8
3,340,587 - LRK54_RS15130 0.36 +1.7
3,340,587 - LRK54_RS15130 0.36 -0.6
3,340,587 - LRK54_RS15130 0.36 -1.5
3,340,587 - LRK54_RS15130 0.36 -1.1
3,340,587 - LRK54_RS15130 0.36 -0.1
3,340,587 - LRK54_RS15130 0.36 -0.3
3,340,587 - LRK54_RS15130 0.36 -0.6
3,340,587 - LRK54_RS15130 0.36 -1.0
3,340,587 - LRK54_RS15130 0.36 +1.5
3,340,587 - LRK54_RS15130 0.36 +0.5
3,340,587 - LRK54_RS15130 0.36 -0.4
3,340,587 - LRK54_RS15130 0.36 -1.5
3,340,587 - LRK54_RS15130 0.36 -0.4
3,340,645 + LRK54_RS15130 0.41 -0.1
3,340,645 + LRK54_RS15130 0.41 -1.2
3,340,645 + LRK54_RS15130 0.41 +0.3
3,340,645 + LRK54_RS15130 0.41 -0.7
3,340,645 + LRK54_RS15130 0.41 -0.1
3,340,645 + LRK54_RS15130 0.41 -0.1
3,340,645 + LRK54_RS15130 0.41 +0.3
3,340,645 + LRK54_RS15130 0.41 +0.7
3,340,645 + LRK54_RS15130 0.41 -0.9
3,340,645 + LRK54_RS15130 0.41 +0.3
3,340,645 + LRK54_RS15130 0.41 +0.1
3,340,645 + LRK54_RS15130 0.41 -1.5
3,340,645 + LRK54_RS15130 0.41 +0.4
3,340,646 - LRK54_RS15130 0.41 -0.1
3,340,646 - LRK54_RS15130 0.41 -0.8
3,340,646 - LRK54_RS15130 0.41 +0.3
3,340,646 - LRK54_RS15130 0.41 -0.8
3,340,646 - LRK54_RS15130 0.41 -0.3
3,340,646 - LRK54_RS15130 0.41 -1.0
3,340,646 - LRK54_RS15130 0.41 +1.7
3,340,646 - LRK54_RS15130 0.41 +0.3
3,340,646 - LRK54_RS15130 0.41 -1.1

Or see this region's nucleotide sequence