Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3452

Experiment: Polymyxin B sulfate 0.1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_3449 and Ga0059261_3450 are separated by 22 nucleotidesGa0059261_3450 and Ga0059261_3451 overlap by 4 nucleotidesGa0059261_3451 and Ga0059261_3452 are separated by 134 nucleotidesGa0059261_3452 and Ga0059261_3453 are separated by 63 nucleotidesGa0059261_3453 and Ga0059261_3454 are separated by 350 nucleotides Ga0059261_3449: Ga0059261_3449 - G/U mismatch-specific uracil-DNA glycosylase (EC 3.2.2.-), at 3,575,010 to 3,575,513 _3449 Ga0059261_3450: Ga0059261_3450 - Predicted membrane protein, at 3,575,536 to 3,575,862 _3450 Ga0059261_3451: Ga0059261_3451 - hypothetical protein, at 3,575,859 to 3,576,281 _3451 Ga0059261_3452: Ga0059261_3452 - Cysteine synthase, at 3,576,416 to 3,577,408 _3452 Ga0059261_3453: Ga0059261_3453 - hypothetical protein, at 3,577,472 to 3,577,777 _3453 Ga0059261_3454: Ga0059261_3454 - Uncharacterized protein conserved in bacteria, at 3,578,128 to 3,578,637 _3454 Position (kb) 3576 3577 3578Strain fitness (log2 ratio) -2 -1 0 1at 3575.524 kb on + strandat 3575.524 kb on + strandat 3575.524 kb on + strandat 3575.524 kb on + strandat 3575.524 kb on + strandat 3575.524 kb on + strandat 3575.525 kb on - strandat 3575.525 kb on - strandat 3575.525 kb on - strandat 3575.525 kb on - strandat 3575.525 kb on - strandat 3575.557 kb on + strandat 3575.558 kb on - strandat 3575.575 kb on + strand, within Ga0059261_3450at 3575.575 kb on + strand, within Ga0059261_3450at 3575.576 kb on - strand, within Ga0059261_3450at 3575.576 kb on - strand, within Ga0059261_3450at 3575.576 kb on - strand, within Ga0059261_3450at 3575.578 kb on + strand, within Ga0059261_3450at 3575.578 kb on + strand, within Ga0059261_3450at 3575.578 kb on + strand, within Ga0059261_3450at 3575.578 kb on + strand, within Ga0059261_3450at 3575.579 kb on - strand, within Ga0059261_3450at 3575.579 kb on - strand, within Ga0059261_3450at 3575.579 kb on - strand, within Ga0059261_3450at 3575.579 kb on - strand, within Ga0059261_3450at 3575.620 kb on + strand, within Ga0059261_3450at 3575.620 kb on + strand, within Ga0059261_3450at 3575.620 kb on + strand, within Ga0059261_3450at 3575.620 kb on + strand, within Ga0059261_3450at 3575.621 kb on - strand, within Ga0059261_3450at 3575.621 kb on - strand, within Ga0059261_3450at 3575.621 kb on - strand, within Ga0059261_3450at 3575.621 kb on - strandat 3575.621 kb on - strand, within Ga0059261_3450at 3575.767 kb on + strand, within Ga0059261_3450at 3575.767 kb on + strand, within Ga0059261_3450at 3575.768 kb on - strand, within Ga0059261_3450at 3575.768 kb on - strand, within Ga0059261_3450at 3575.768 kb on - strand, within Ga0059261_3450at 3575.794 kb on + strand, within Ga0059261_3450at 3575.794 kb on + strand, within Ga0059261_3450at 3575.795 kb on - strand, within Ga0059261_3450at 3575.861 kb on - strandat 3576.106 kb on + strand, within Ga0059261_3451at 3576.107 kb on - strand, within Ga0059261_3451at 3576.107 kb on - strand, within Ga0059261_3451at 3576.265 kb on + strandat 3576.266 kb on - strandat 3576.266 kb on - strandat 3576.272 kb on + strandat 3576.272 kb on + strandat 3576.272 kb on + strandat 3576.272 kb on + strandat 3576.273 kb on - strandat 3576.273 kb on - strandat 3576.273 kb on - strandat 3576.506 kb on + strandat 3576.506 kb on + strandat 3576.507 kb on - strandat 3576.507 kb on - strandat 3576.507 kb on - strandat 3576.862 kb on + strandat 3577.055 kb on + strand, within Ga0059261_3452at 3577.055 kb on + strand, within Ga0059261_3452at 3577.055 kb on + strand, within Ga0059261_3452at 3577.055 kb on + strand, within Ga0059261_3452at 3577.058 kb on + strandat 3577.123 kb on + strandat 3577.346 kb on + strandat 3577.347 kb on - strandat 3577.347 kb on - strandat 3577.417 kb on + strandat 3577.417 kb on + strandat 3577.452 kb on + strandat 3577.452 kb on + strandat 3577.757 kb on + strandat 3577.758 kb on - strandat 3577.890 kb on + strandat 3577.890 kb on + strandat 3577.890 kb on + strandat 3577.922 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.1 mg/ml
remove
3,575,524 + +0.4
3,575,524 + -0.6
3,575,524 + -0.3
3,575,524 + -0.6
3,575,524 + -1.1
3,575,524 + -0.9
3,575,525 - +0.4
3,575,525 - -0.7
3,575,525 - +1.2
3,575,525 - -1.3
3,575,525 - -1.4
3,575,557 + +0.1
3,575,558 - -0.4
3,575,575 + Ga0059261_3450 0.12 -1.3
3,575,575 + Ga0059261_3450 0.12 +0.3
3,575,576 - Ga0059261_3450 0.12 +0.4
3,575,576 - Ga0059261_3450 0.12 -0.4
3,575,576 - Ga0059261_3450 0.12 -0.6
3,575,578 + Ga0059261_3450 0.13 +0.3
3,575,578 + Ga0059261_3450 0.13 -1.3
3,575,578 + Ga0059261_3450 0.13 +0.6
3,575,578 + Ga0059261_3450 0.13 +0.1
3,575,579 - Ga0059261_3450 0.13 -0.7
3,575,579 - Ga0059261_3450 0.13 +0.9
3,575,579 - Ga0059261_3450 0.13 -0.4
3,575,579 - Ga0059261_3450 0.13 -0.1
3,575,620 + Ga0059261_3450 0.26 -1.1
3,575,620 + Ga0059261_3450 0.26 -0.6
3,575,620 + Ga0059261_3450 0.26 +0.5
3,575,620 + Ga0059261_3450 0.26 -0.6
3,575,621 - Ga0059261_3450 0.26 +0.4
3,575,621 - Ga0059261_3450 0.26 -0.0
3,575,621 - Ga0059261_3450 0.26 +0.2
3,575,621 - -0.6
3,575,621 - Ga0059261_3450 0.26 -1.1
3,575,767 + Ga0059261_3450 0.71 -0.3
3,575,767 + Ga0059261_3450 0.71 -0.6
3,575,768 - Ga0059261_3450 0.71 -1.0
3,575,768 - Ga0059261_3450 0.71 +0.1
3,575,768 - Ga0059261_3450 0.71 -1.3
3,575,794 + Ga0059261_3450 0.79 -1.9
3,575,794 + Ga0059261_3450 0.79 -0.2
3,575,795 - Ga0059261_3450 0.79 +0.4
3,575,861 - -0.0
3,576,106 + Ga0059261_3451 0.58 -0.2
3,576,107 - Ga0059261_3451 0.59 -0.2
3,576,107 - Ga0059261_3451 0.59 -1.1
3,576,265 + +0.4
3,576,266 - +0.4
3,576,266 - -1.8
3,576,272 + +0.5
3,576,272 + -0.1
3,576,272 + -0.1
3,576,272 + -0.0
3,576,273 - -1.1
3,576,273 - +1.0
3,576,273 - -0.4
3,576,506 + -2.1
3,576,506 + -1.0
3,576,507 - -2.7
3,576,507 - -1.6
3,576,507 - -1.3
3,576,862 + -1.8
3,577,055 + Ga0059261_3452 0.64 -1.8
3,577,055 + Ga0059261_3452 0.64 -1.0
3,577,055 + Ga0059261_3452 0.64 -0.2
3,577,055 + Ga0059261_3452 0.64 -1.3
3,577,058 + -1.0
3,577,123 + +1.0
3,577,346 + -0.3
3,577,347 - +0.6
3,577,347 - +0.6
3,577,417 + -0.3
3,577,417 + -0.2
3,577,452 + +0.1
3,577,452 + +0.3
3,577,757 + +0.4
3,577,758 - +0.5
3,577,890 + -1.0
3,577,890 + +0.2
3,577,890 + -0.3
3,577,922 - +1.0

Or see this region's nucleotide sequence