Experiment: Polymyxin B sulfate 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_2739 and Ga0059261_2740 are separated by 13 nucleotides Ga0059261_2740 and Ga0059261_2741 are separated by 92 nucleotides Ga0059261_2741 and Ga0059261_2742 overlap by 4 nucleotides Ga0059261_2742 and Ga0059261_2743 are separated by 29 nucleotides
Ga0059261_2739: Ga0059261_2739 - heat-inducible transcription repressor HrcA, at 2,850,440 to 2,851,519
_2739
Ga0059261_2740: Ga0059261_2740 - hypothetical protein, at 2,851,533 to 2,852,108
_2740
Ga0059261_2741: Ga0059261_2741 - ribonuclease PH, at 2,852,201 to 2,852,917
_2741
Ga0059261_2742: Ga0059261_2742 - non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family, at 2,852,914 to 2,853,555
_2742
Ga0059261_2743: Ga0059261_2743 - hypothetical protein, at 2,853,585 to 2,853,746
_2743
Position (kb)
2852
2853 Strain fitness (log2 ratio)
-1
0
1
2 at 2851.413 kb on + strand at 2851.413 kb on + strand at 2851.413 kb on + strand at 2851.488 kb on + strand at 2851.488 kb on + strand at 2851.488 kb on + strand at 2851.488 kb on + strand at 2851.488 kb on + strand at 2851.488 kb on + strand at 2851.488 kb on + strand at 2851.488 kb on + strand at 2851.489 kb on - strand at 2851.489 kb on - strand at 2851.489 kb on - strand at 2851.489 kb on - strand at 2851.489 kb on - strand at 2851.489 kb on - strand at 2851.496 kb on + strand at 2851.496 kb on + strand at 2851.496 kb on + strand at 2851.496 kb on + strand at 2851.497 kb on - strand at 2851.497 kb on - strand at 2851.497 kb on - strand at 2851.642 kb on + strand, within Ga0059261_2740 at 2851.642 kb on + strand at 2851.643 kb on - strand, within Ga0059261_2740 at 2851.643 kb on - strand, within Ga0059261_2740 at 2851.677 kb on + strand, within Ga0059261_2740 at 2851.677 kb on + strand, within Ga0059261_2740 at 2851.678 kb on - strand, within Ga0059261_2740 at 2851.678 kb on - strand, within Ga0059261_2740 at 2851.678 kb on - strand, within Ga0059261_2740 at 2851.678 kb on - strand, within Ga0059261_2740 at 2851.735 kb on + strand, within Ga0059261_2740 at 2851.735 kb on + strand, within Ga0059261_2740 at 2851.894 kb on + strand, within Ga0059261_2740 at 2851.894 kb on + strand, within Ga0059261_2740 at 2851.894 kb on + strand, within Ga0059261_2740 at 2851.894 kb on + strand, within Ga0059261_2740 at 2851.931 kb on - strand, within Ga0059261_2740 at 2851.931 kb on - strand, within Ga0059261_2740 at 2852.060 kb on + strand at 2852.060 kb on + strand at 2852.061 kb on - strand at 2852.089 kb on - strand at 2852.099 kb on + strand at 2852.163 kb on + strand at 2852.163 kb on + strand at 2852.164 kb on - strand at 2852.164 kb on - strand at 2852.164 kb on - strand at 2852.164 kb on - strand at 2852.393 kb on - strand at 2852.700 kb on - strand at 2852.985 kb on + strand, within Ga0059261_2742 at 2852.985 kb on + strand, within Ga0059261_2742 at 2853.433 kb on + strand, within Ga0059261_2742 at 2853.433 kb on + strand, within Ga0059261_2742 at 2853.434 kb on - strand, within Ga0059261_2742 at 2853.628 kb on + strand, within Ga0059261_2743 at 2853.721 kb on + strand, within Ga0059261_2743 at 2853.721 kb on + strand, within Ga0059261_2743 at 2853.722 kb on - strand, within Ga0059261_2743 at 2853.722 kb on - strand, within Ga0059261_2743 at 2853.722 kb on - strand, within Ga0059261_2743 at 2853.722 kb on - strand, within Ga0059261_2743 at 2853.832 kb on - strand at 2853.832 kb on - strand at 2853.837 kb on + strand at 2853.837 kb on + strand at 2853.838 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.1 mg/ml remove 2,851,413 + +0.9 2,851,413 + -0.2 2,851,413 + +0.4 2,851,488 + -0.0 2,851,488 + -0.2 2,851,488 + +0.3 2,851,488 + +1.1 2,851,488 + +0.4 2,851,488 + +0.3 2,851,488 + -0.0 2,851,488 + +0.3 2,851,489 - +0.8 2,851,489 - +0.7 2,851,489 - +0.4 2,851,489 - +0.2 2,851,489 - +0.1 2,851,489 - +2.0 2,851,496 + -0.9 2,851,496 + -0.1 2,851,496 + +1.4 2,851,496 + +1.1 2,851,497 - +1.1 2,851,497 - +0.1 2,851,497 - +0.7 2,851,642 + Ga0059261_2740 0.19 -0.0 2,851,642 + -0.9 2,851,643 - Ga0059261_2740 0.19 -1.0 2,851,643 - Ga0059261_2740 0.19 +0.6 2,851,677 + Ga0059261_2740 0.25 -0.1 2,851,677 + Ga0059261_2740 0.25 +0.5 2,851,678 - Ga0059261_2740 0.25 -0.1 2,851,678 - Ga0059261_2740 0.25 -0.8 2,851,678 - Ga0059261_2740 0.25 +0.2 2,851,678 - Ga0059261_2740 0.25 -0.0 2,851,735 + Ga0059261_2740 0.35 -0.3 2,851,735 + Ga0059261_2740 0.35 -0.0 2,851,894 + Ga0059261_2740 0.63 -1.0 2,851,894 + Ga0059261_2740 0.63 -0.6 2,851,894 + Ga0059261_2740 0.63 -0.5 2,851,894 + Ga0059261_2740 0.63 +0.4 2,851,931 - Ga0059261_2740 0.69 -0.7 2,851,931 - Ga0059261_2740 0.69 -0.5 2,852,060 + -0.9 2,852,060 + +0.6 2,852,061 - -0.4 2,852,089 - -0.2 2,852,099 + -0.1 2,852,163 + +0.7 2,852,163 + -0.5 2,852,164 - -0.5 2,852,164 - +1.2 2,852,164 - -1.1 2,852,164 - +0.3 2,852,393 - -1.5 2,852,700 - -0.5 2,852,985 + Ga0059261_2742 0.11 +0.1 2,852,985 + Ga0059261_2742 0.11 -0.5 2,853,433 + Ga0059261_2742 0.81 -0.6 2,853,433 + Ga0059261_2742 0.81 +0.0 2,853,434 - Ga0059261_2742 0.81 -0.4 2,853,628 + Ga0059261_2743 0.27 -0.1 2,853,721 + Ga0059261_2743 0.84 -0.0 2,853,721 + Ga0059261_2743 0.84 -0.7 2,853,722 - Ga0059261_2743 0.85 +0.0 2,853,722 - Ga0059261_2743 0.85 +1.1 2,853,722 - Ga0059261_2743 0.85 +0.6 2,853,722 - Ga0059261_2743 0.85 -0.7 2,853,832 - +1.1 2,853,832 - +0.1 2,853,837 + +0.1 2,853,837 + +0.3 2,853,838 - +0.2
Or see this region's nucleotide sequence