Experiment: Polymyxin B sulfate 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_2516 and Ga0059261_2517 are separated by 76 nucleotides Ga0059261_2517 and Ga0059261_2518 are separated by 4 nucleotides Ga0059261_2518 and Ga0059261_2519 are separated by 188 nucleotides
Ga0059261_2516: Ga0059261_2516 - Dioxygenases related to 2-nitropropane dioxygenase, at 2,607,965 to 2,608,983
_2516
Ga0059261_2517: Ga0059261_2517 - Predicted metal-dependent hydrolase of the TIM-barrel fold, at 2,609,060 to 2,609,908
_2517
Ga0059261_2518: Ga0059261_2518 - Metal-dependent hydrolase, at 2,609,913 to 2,610,725
_2518
Ga0059261_2519: Ga0059261_2519 - aspartate kinase (EC 2.7.2.4), at 2,610,914 to 2,612,173
_2519
Position (kb)
2609
2610
2611 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2609.046 kb on + strand at 2609.046 kb on + strand at 2609.046 kb on + strand at 2609.046 kb on + strand at 2609.046 kb on + strand at 2609.046 kb on + strand at 2609.047 kb on - strand at 2609.180 kb on + strand, within Ga0059261_2517 at 2609.180 kb on + strand, within Ga0059261_2517 at 2609.354 kb on + strand, within Ga0059261_2517 at 2609.355 kb on - strand, within Ga0059261_2517 at 2609.355 kb on - strand, within Ga0059261_2517 at 2609.599 kb on + strand, within Ga0059261_2517 at 2609.600 kb on - strand, within Ga0059261_2517 at 2609.600 kb on - strand, within Ga0059261_2517 at 2609.674 kb on + strand, within Ga0059261_2517 at 2609.674 kb on + strand, within Ga0059261_2517 at 2609.674 kb on + strand, within Ga0059261_2517 at 2609.674 kb on + strand, within Ga0059261_2517 at 2609.674 kb on + strand, within Ga0059261_2517 at 2609.674 kb on + strand, within Ga0059261_2517 at 2609.674 kb on + strand, within Ga0059261_2517 at 2609.675 kb on - strand, within Ga0059261_2517 at 2609.675 kb on - strand, within Ga0059261_2517 at 2609.675 kb on - strand, within Ga0059261_2517 at 2609.678 kb on + strand, within Ga0059261_2517 at 2609.678 kb on + strand, within Ga0059261_2517 at 2609.678 kb on + strand, within Ga0059261_2517 at 2609.679 kb on + strand, within Ga0059261_2517 at 2609.679 kb on - strand, within Ga0059261_2517 at 2609.679 kb on - strand, within Ga0059261_2517 at 2609.679 kb on - strand, within Ga0059261_2517 at 2609.679 kb on - strand, within Ga0059261_2517 at 2609.679 kb on - strand, within Ga0059261_2517 at 2609.679 kb on - strand, within Ga0059261_2517 at 2609.679 kb on - strand, within Ga0059261_2517 at 2609.679 kb on - strand, within Ga0059261_2517 at 2609.679 kb on - strand, within Ga0059261_2517 at 2609.679 kb on - strand, within Ga0059261_2517 at 2609.770 kb on + strand, within Ga0059261_2517 at 2609.770 kb on + strand, within Ga0059261_2517 at 2609.770 kb on + strand, within Ga0059261_2517 at 2609.771 kb on - strand, within Ga0059261_2517 at 2609.771 kb on - strand, within Ga0059261_2517 at 2609.771 kb on - strand, within Ga0059261_2517 at 2609.771 kb on - strand, within Ga0059261_2517 at 2609.771 kb on - strand, within Ga0059261_2517 at 2609.771 kb on - strand, within Ga0059261_2517 at 2609.790 kb on - strand, within Ga0059261_2517 at 2609.790 kb on - strand, within Ga0059261_2517 at 2609.925 kb on - strand at 2609.999 kb on + strand, within Ga0059261_2518 at 2610.186 kb on + strand, within Ga0059261_2518 at 2610.186 kb on + strand, within Ga0059261_2518 at 2610.186 kb on + strand, within Ga0059261_2518 at 2610.186 kb on + strand, within Ga0059261_2518 at 2610.186 kb on + strand, within Ga0059261_2518 at 2610.186 kb on + strand, within Ga0059261_2518 at 2610.187 kb on - strand, within Ga0059261_2518 at 2610.187 kb on - strand, within Ga0059261_2518 at 2610.187 kb on - strand, within Ga0059261_2518 at 2610.187 kb on - strand, within Ga0059261_2518 at 2610.188 kb on + strand, within Ga0059261_2518 at 2610.188 kb on + strand, within Ga0059261_2518 at 2610.188 kb on + strand, within Ga0059261_2518 at 2610.189 kb on - strand, within Ga0059261_2518 at 2610.306 kb on + strand, within Ga0059261_2518 at 2610.307 kb on - strand, within Ga0059261_2518 at 2610.307 kb on - strand, within Ga0059261_2518 at 2610.307 kb on - strand, within Ga0059261_2518 at 2610.307 kb on - strand, within Ga0059261_2518 at 2610.356 kb on + strand, within Ga0059261_2518 at 2610.357 kb on - strand at 2610.560 kb on + strand, within Ga0059261_2518 at 2610.560 kb on + strand, within Ga0059261_2518 at 2610.560 kb on + strand, within Ga0059261_2518 at 2610.560 kb on + strand, within Ga0059261_2518 at 2610.561 kb on - strand, within Ga0059261_2518 at 2610.561 kb on - strand, within Ga0059261_2518 at 2610.561 kb on - strand, within Ga0059261_2518 at 2610.561 kb on - strand, within Ga0059261_2518 at 2610.561 kb on - strand, within Ga0059261_2518 at 2610.561 kb on - strand, within Ga0059261_2518 at 2610.561 kb on - strand, within Ga0059261_2518 at 2610.561 kb on - strand, within Ga0059261_2518 at 2610.605 kb on + strand, within Ga0059261_2518 at 2610.605 kb on + strand, within Ga0059261_2518 at 2610.605 kb on + strand, within Ga0059261_2518 at 2610.605 kb on + strand, within Ga0059261_2518 at 2610.605 kb on + strand, within Ga0059261_2518 at 2610.605 kb on + strand, within Ga0059261_2518 at 2610.605 kb on + strand, within Ga0059261_2518 at 2610.606 kb on - strand, within Ga0059261_2518 at 2610.606 kb on - strand, within Ga0059261_2518 at 2610.606 kb on - strand, within Ga0059261_2518 at 2610.606 kb on - strand, within Ga0059261_2518 at 2610.606 kb on - strand, within Ga0059261_2518 at 2610.606 kb on - strand, within Ga0059261_2518 at 2610.606 kb on - strand, within Ga0059261_2518 at 2610.606 kb on - strand, within Ga0059261_2518 at 2610.745 kb on + strand at 2610.745 kb on + strand at 2610.745 kb on + strand at 2610.746 kb on - strand at 2610.746 kb on - strand at 2610.746 kb on - strand at 2610.820 kb on + strand at 2610.820 kb on + strand at 2610.820 kb on + strand at 2610.820 kb on + strand at 2610.820 kb on + strand at 2610.820 kb on + strand at 2610.820 kb on + strand at 2610.820 kb on + strand at 2610.820 kb on + strand at 2610.820 kb on + strand at 2610.820 kb on + strand at 2610.821 kb on - strand at 2610.821 kb on - strand at 2610.821 kb on - strand at 2610.821 kb on - strand at 2610.821 kb on - strand at 2610.821 kb on - strand at 2610.821 kb on - strand at 2610.821 kb on - strand at 2610.821 kb on - strand at 2610.821 kb on - strand at 2610.821 kb on - strand at 2610.821 kb on - strand at 2610.821 kb on - strand at 2610.883 kb on + strand at 2610.883 kb on + strand at 2610.883 kb on + strand at 2610.883 kb on + strand at 2610.883 kb on + strand at 2610.883 kb on + strand at 2610.883 kb on + strand at 2610.883 kb on + strand at 2610.883 kb on + strand at 2610.883 kb on + strand at 2610.883 kb on + strand at 2610.883 kb on + strand at 2610.883 kb on + strand at 2610.883 kb on + strand at 2610.884 kb on - strand at 2610.884 kb on - strand at 2610.884 kb on - strand at 2610.884 kb on - strand at 2610.884 kb on - strand at 2610.884 kb on - strand at 2610.884 kb on - strand at 2610.884 kb on - strand at 2610.884 kb on - strand at 2610.915 kb on + strand at 2610.949 kb on - strand at 2610.949 kb on - strand at 2610.956 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.1 mg/ml remove 2,609,046 + +0.4 2,609,046 + -0.5 2,609,046 + +0.7 2,609,046 + -0.1 2,609,046 + -0.2 2,609,046 + +0.6 2,609,047 - +0.3 2,609,180 + Ga0059261_2517 0.14 +0.4 2,609,180 + Ga0059261_2517 0.14 +0.7 2,609,354 + Ga0059261_2517 0.35 +0.7 2,609,355 - Ga0059261_2517 0.35 +0.1 2,609,355 - Ga0059261_2517 0.35 +0.1 2,609,599 + Ga0059261_2517 0.63 +0.2 2,609,600 - Ga0059261_2517 0.64 -0.1 2,609,600 - Ga0059261_2517 0.64 +1.0 2,609,674 + Ga0059261_2517 0.72 -0.5 2,609,674 + Ga0059261_2517 0.72 +0.1 2,609,674 + Ga0059261_2517 0.72 -1.2 2,609,674 + Ga0059261_2517 0.72 +0.5 2,609,674 + Ga0059261_2517 0.72 +0.3 2,609,674 + Ga0059261_2517 0.72 +0.1 2,609,674 + Ga0059261_2517 0.72 +0.1 2,609,675 - Ga0059261_2517 0.72 -0.2 2,609,675 - Ga0059261_2517 0.72 -0.4 2,609,675 - Ga0059261_2517 0.72 +0.6 2,609,678 + Ga0059261_2517 0.73 -0.1 2,609,678 + Ga0059261_2517 0.73 -2.4 2,609,678 + Ga0059261_2517 0.73 -0.6 2,609,679 + Ga0059261_2517 0.73 -1.5 2,609,679 - Ga0059261_2517 0.73 -0.0 2,609,679 - Ga0059261_2517 0.73 +0.2 2,609,679 - Ga0059261_2517 0.73 +0.4 2,609,679 - Ga0059261_2517 0.73 +0.4 2,609,679 - Ga0059261_2517 0.73 -1.2 2,609,679 - Ga0059261_2517 0.73 -0.0 2,609,679 - Ga0059261_2517 0.73 -1.0 2,609,679 - Ga0059261_2517 0.73 -1.0 2,609,679 - Ga0059261_2517 0.73 +0.2 2,609,679 - Ga0059261_2517 0.73 +0.7 2,609,770 + Ga0059261_2517 0.84 +0.8 2,609,770 + Ga0059261_2517 0.84 +1.0 2,609,770 + Ga0059261_2517 0.84 +0.3 2,609,771 - Ga0059261_2517 0.84 +0.6 2,609,771 - Ga0059261_2517 0.84 -2.0 2,609,771 - Ga0059261_2517 0.84 -1.2 2,609,771 - Ga0059261_2517 0.84 -0.7 2,609,771 - Ga0059261_2517 0.84 +0.5 2,609,771 - Ga0059261_2517 0.84 -0.2 2,609,790 - Ga0059261_2517 0.86 -0.1 2,609,790 - Ga0059261_2517 0.86 -0.0 2,609,925 - -0.4 2,609,999 + Ga0059261_2518 0.11 +0.3 2,610,186 + Ga0059261_2518 0.34 -1.0 2,610,186 + Ga0059261_2518 0.34 -0.8 2,610,186 + Ga0059261_2518 0.34 +0.4 2,610,186 + Ga0059261_2518 0.34 +0.2 2,610,186 + Ga0059261_2518 0.34 +0.4 2,610,186 + Ga0059261_2518 0.34 +0.1 2,610,187 - Ga0059261_2518 0.34 -0.2 2,610,187 - Ga0059261_2518 0.34 +0.5 2,610,187 - Ga0059261_2518 0.34 -0.2 2,610,187 - Ga0059261_2518 0.34 +0.6 2,610,188 + Ga0059261_2518 0.34 -0.1 2,610,188 + Ga0059261_2518 0.34 +0.8 2,610,188 + Ga0059261_2518 0.34 -0.2 2,610,189 - Ga0059261_2518 0.34 -0.2 2,610,306 + Ga0059261_2518 0.48 -0.2 2,610,307 - Ga0059261_2518 0.48 -2.0 2,610,307 - Ga0059261_2518 0.48 +0.2 2,610,307 - Ga0059261_2518 0.48 +0.7 2,610,307 - Ga0059261_2518 0.48 -0.8 2,610,356 + Ga0059261_2518 0.54 -3.2 2,610,357 - +0.2 2,610,560 + Ga0059261_2518 0.80 +0.6 2,610,560 + Ga0059261_2518 0.80 +0.4 2,610,560 + Ga0059261_2518 0.80 -1.3 2,610,560 + Ga0059261_2518 0.80 -0.4 2,610,561 - Ga0059261_2518 0.80 +0.7 2,610,561 - Ga0059261_2518 0.80 +0.7 2,610,561 - Ga0059261_2518 0.80 +0.2 2,610,561 - Ga0059261_2518 0.80 +0.8 2,610,561 - Ga0059261_2518 0.80 +0.2 2,610,561 - Ga0059261_2518 0.80 +0.4 2,610,561 - Ga0059261_2518 0.80 -0.5 2,610,561 - Ga0059261_2518 0.80 +0.6 2,610,605 + Ga0059261_2518 0.85 -0.1 2,610,605 + Ga0059261_2518 0.85 -2.0 2,610,605 + Ga0059261_2518 0.85 -0.0 2,610,605 + Ga0059261_2518 0.85 +0.2 2,610,605 + Ga0059261_2518 0.85 -1.2 2,610,605 + Ga0059261_2518 0.85 +0.2 2,610,605 + Ga0059261_2518 0.85 -0.1 2,610,606 - Ga0059261_2518 0.85 -0.6 2,610,606 - Ga0059261_2518 0.85 -0.8 2,610,606 - Ga0059261_2518 0.85 -0.4 2,610,606 - Ga0059261_2518 0.85 -0.5 2,610,606 - Ga0059261_2518 0.85 -0.4 2,610,606 - Ga0059261_2518 0.85 +0.4 2,610,606 - Ga0059261_2518 0.85 +0.1 2,610,606 - Ga0059261_2518 0.85 -0.4 2,610,745 + -0.2 2,610,745 + +0.6 2,610,745 + +0.2 2,610,746 - -0.1 2,610,746 - -0.8 2,610,746 - -0.5 2,610,820 + +0.8 2,610,820 + -0.2 2,610,820 + +0.5 2,610,820 + -0.3 2,610,820 + +0.2 2,610,820 + -0.8 2,610,820 + -0.2 2,610,820 + -0.0 2,610,820 + -0.0 2,610,820 + +0.2 2,610,820 + +0.4 2,610,821 - -0.7 2,610,821 - +1.9 2,610,821 - +1.7 2,610,821 - -0.5 2,610,821 - +0.5 2,610,821 - -0.3 2,610,821 - +0.2 2,610,821 - +0.4 2,610,821 - -0.4 2,610,821 - -0.6 2,610,821 - +0.3 2,610,821 - +0.1 2,610,821 - -0.8 2,610,883 + -1.2 2,610,883 + +0.1 2,610,883 + -0.3 2,610,883 + -1.4 2,610,883 + +0.1 2,610,883 + -0.2 2,610,883 + -0.4 2,610,883 + -0.1 2,610,883 + +0.5 2,610,883 + -0.2 2,610,883 + -1.2 2,610,883 + +0.2 2,610,883 + -0.2 2,610,883 + -0.0 2,610,884 - +0.2 2,610,884 - -1.1 2,610,884 - -0.3 2,610,884 - -0.2 2,610,884 - +0.2 2,610,884 - +0.2 2,610,884 - +0.4 2,610,884 - -0.3 2,610,884 - -0.4 2,610,915 + +0.3 2,610,949 - +0.2 2,610,949 - +0.1 2,610,956 - +0.0
Or see this region's nucleotide sequence