Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02595

Experiment: PYE with Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02594 and CCNA_02595 are separated by 9 nucleotidesCCNA_02595 and CCNA_02596 are separated by 264 nucleotides CCNA_02594: CCNA_02594 - heat shock endopeptidase HtpX, at 2,742,178 to 2,743,128 _02594 CCNA_02595: CCNA_02595 - Zn finger TFIIB-family transcription factor, at 2,743,138 to 2,743,458 _02595 CCNA_02596: CCNA_02596 - SSU ribosomal protein S4P, at 2,743,723 to 2,744,340 _02596 Position (kb) 2743 2744Strain fitness (log2 ratio) -2 -1 0 1 2at 2742.158 kb on + strandat 2742.158 kb on + strandat 2742.163 kb on + strandat 2742.166 kb on - strandat 2742.166 kb on - strandat 2742.171 kb on + strandat 2742.171 kb on + strandat 2742.179 kb on - strandat 2742.203 kb on + strandat 2742.216 kb on + strandat 2742.277 kb on + strand, within CCNA_02594at 2742.295 kb on + strand, within CCNA_02594at 2742.303 kb on - strand, within CCNA_02594at 2742.314 kb on + strand, within CCNA_02594at 2742.322 kb on - strand, within CCNA_02594at 2742.338 kb on + strand, within CCNA_02594at 2742.364 kb on + strand, within CCNA_02594at 2742.372 kb on - strand, within CCNA_02594at 2742.392 kb on + strand, within CCNA_02594at 2742.402 kb on + strand, within CCNA_02594at 2742.439 kb on - strand, within CCNA_02594at 2742.448 kb on + strand, within CCNA_02594at 2742.451 kb on - strand, within CCNA_02594at 2742.456 kb on + strand, within CCNA_02594at 2742.456 kb on - strand, within CCNA_02594at 2742.489 kb on + strand, within CCNA_02594at 2742.522 kb on - strand, within CCNA_02594at 2742.522 kb on - strand, within CCNA_02594at 2742.567 kb on + strand, within CCNA_02594at 2742.586 kb on + strand, within CCNA_02594at 2742.586 kb on + strand, within CCNA_02594at 2742.586 kb on + strand, within CCNA_02594at 2742.586 kb on + strand, within CCNA_02594at 2742.591 kb on + strand, within CCNA_02594at 2742.594 kb on - strand, within CCNA_02594at 2742.594 kb on - strand, within CCNA_02594at 2742.604 kb on + strand, within CCNA_02594at 2742.660 kb on - strand, within CCNA_02594at 2742.686 kb on + strand, within CCNA_02594at 2742.686 kb on + strand, within CCNA_02594at 2742.694 kb on - strand, within CCNA_02594at 2742.694 kb on - strand, within CCNA_02594at 2742.694 kb on - strand, within CCNA_02594at 2742.696 kb on + strand, within CCNA_02594at 2742.721 kb on - strand, within CCNA_02594at 2742.726 kb on - strand, within CCNA_02594at 2742.740 kb on + strand, within CCNA_02594at 2742.827 kb on + strandat 2742.834 kb on - strand, within CCNA_02594at 2742.835 kb on - strand, within CCNA_02594at 2742.835 kb on - strand, within CCNA_02594at 2742.835 kb on - strand, within CCNA_02594at 2742.835 kb on - strand, within CCNA_02594at 2742.957 kb on + strand, within CCNA_02594at 2742.957 kb on + strand, within CCNA_02594at 2743.019 kb on + strand, within CCNA_02594at 2743.060 kb on - strandat 2743.073 kb on + strandat 2743.073 kb on + strandat 2743.073 kb on + strandat 2743.081 kb on - strandat 2743.081 kb on - strandat 2743.112 kb on - strandat 2743.190 kb on - strand, within CCNA_02595at 2743.198 kb on - strand, within CCNA_02595at 2743.216 kb on + strand, within CCNA_02595at 2743.236 kb on + strand, within CCNA_02595at 2743.244 kb on - strand, within CCNA_02595at 2743.244 kb on - strand, within CCNA_02595at 2743.244 kb on - strand, within CCNA_02595at 2743.291 kb on - strand, within CCNA_02595at 2743.291 kb on - strand, within CCNA_02595at 2743.291 kb on - strand, within CCNA_02595at 2743.291 kb on - strand, within CCNA_02595at 2743.291 kb on - strand, within CCNA_02595at 2743.294 kb on + strand, within CCNA_02595at 2743.302 kb on - strand, within CCNA_02595at 2743.349 kb on + strand, within CCNA_02595at 2743.398 kb on + strand, within CCNA_02595at 2743.418 kb on - strand, within CCNA_02595at 2743.418 kb on - strand, within CCNA_02595at 2743.443 kb on - strandat 2743.507 kb on - strandat 2743.608 kb on - strandat 2743.632 kb on - strandat 2743.648 kb on + strandat 2743.656 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Chlorite 0.5 mM
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2,742,158 + -1.3
2,742,158 + -1.3
2,742,163 + -0.3
2,742,166 - +0.8
2,742,166 - +1.3
2,742,171 + -1.4
2,742,171 + +0.7
2,742,179 - -0.3
2,742,203 + -1.0
2,742,216 + +0.3
2,742,277 + CCNA_02594 0.10 -0.8
2,742,295 + CCNA_02594 0.12 +0.4
2,742,303 - CCNA_02594 0.13 +2.1
2,742,314 + CCNA_02594 0.14 -0.0
2,742,322 - CCNA_02594 0.15 +1.8
2,742,338 + CCNA_02594 0.17 -1.9
2,742,364 + CCNA_02594 0.20 -0.9
2,742,372 - CCNA_02594 0.20 +0.1
2,742,392 + CCNA_02594 0.23 -0.9
2,742,402 + CCNA_02594 0.24 +0.5
2,742,439 - CCNA_02594 0.27 -0.8
2,742,448 + CCNA_02594 0.28 -0.6
2,742,451 - CCNA_02594 0.29 -0.6
2,742,456 + CCNA_02594 0.29 -1.0
2,742,456 - CCNA_02594 0.29 -0.5
2,742,489 + CCNA_02594 0.33 +0.4
2,742,522 - CCNA_02594 0.36 +0.7
2,742,522 - CCNA_02594 0.36 +0.6
2,742,567 + CCNA_02594 0.41 -0.9
2,742,586 + CCNA_02594 0.43 +0.1
2,742,586 + CCNA_02594 0.43 -0.6
2,742,586 + CCNA_02594 0.43 -0.1
2,742,586 + CCNA_02594 0.43 +0.4
2,742,591 + CCNA_02594 0.43 -0.4
2,742,594 - CCNA_02594 0.44 +1.1
2,742,594 - CCNA_02594 0.44 +1.1
2,742,604 + CCNA_02594 0.45 -0.9
2,742,660 - CCNA_02594 0.51 +0.8
2,742,686 + CCNA_02594 0.53 -0.8
2,742,686 + CCNA_02594 0.53 -0.9
2,742,694 - CCNA_02594 0.54 +1.0
2,742,694 - CCNA_02594 0.54 +0.8
2,742,694 - CCNA_02594 0.54 +0.6
2,742,696 + CCNA_02594 0.54 -0.5
2,742,721 - CCNA_02594 0.57 +0.3
2,742,726 - CCNA_02594 0.58 +0.6
2,742,740 + CCNA_02594 0.59 +0.9
2,742,827 + -0.3
2,742,834 - CCNA_02594 0.69 +0.8
2,742,835 - CCNA_02594 0.69 +0.2
2,742,835 - CCNA_02594 0.69 +0.4
2,742,835 - CCNA_02594 0.69 +0.9
2,742,835 - CCNA_02594 0.69 +0.3
2,742,957 + CCNA_02594 0.82 -0.8
2,742,957 + CCNA_02594 0.82 -0.3
2,743,019 + CCNA_02594 0.88 +0.7
2,743,060 - -0.3
2,743,073 + -0.3
2,743,073 + -0.6
2,743,073 + -0.6
2,743,081 - -2.1
2,743,081 - +0.7
2,743,112 - -0.3
2,743,190 - CCNA_02595 0.16 +0.9
2,743,198 - CCNA_02595 0.19 +1.8
2,743,216 + CCNA_02595 0.24 -0.6
2,743,236 + CCNA_02595 0.31 +2.7
2,743,244 - CCNA_02595 0.33 +1.6
2,743,244 - CCNA_02595 0.33 +1.2
2,743,244 - CCNA_02595 0.33 +0.6
2,743,291 - CCNA_02595 0.48 +1.5
2,743,291 - CCNA_02595 0.48 +0.9
2,743,291 - CCNA_02595 0.48 +0.3
2,743,291 - CCNA_02595 0.48 +1.3
2,743,291 - CCNA_02595 0.48 +0.6
2,743,294 + CCNA_02595 0.49 -0.6
2,743,302 - CCNA_02595 0.51 +1.6
2,743,349 + CCNA_02595 0.66 -1.7
2,743,398 + CCNA_02595 0.81 +1.8
2,743,418 - CCNA_02595 0.87 +1.2
2,743,418 - CCNA_02595 0.87 +1.3
2,743,443 - +1.4
2,743,507 - +1.4
2,743,608 - +1.7
2,743,632 - +1.8
2,743,648 + +0.4
2,743,656 - +1.3

Or see this region's nucleotide sequence