Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01897

Experiment: PYE with Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01895 and CCNA_01896 are separated by 473 nucleotidesCCNA_01896 and CCNA_01897 are separated by 270 nucleotidesCCNA_01897 and CCNA_01898 overlap by 4 nucleotidesCCNA_01898 and CCNA_01899 overlap by 4 nucleotides CCNA_01895: CCNA_01895 - transporter, major facilitator superfamily, at 2,037,657 to 2,039,096 _01895 CCNA_01896: CCNA_01896 - hypothetical protein, at 2,039,570 to 2,039,776 _01896 CCNA_01897: CCNA_01897 - metal-dependent hydrolase, at 2,040,047 to 2,040,853 _01897 CCNA_01898: CCNA_01898 - Mg-dependent Dnase TatD, at 2,040,850 to 2,041,638 _01898 CCNA_01899: CCNA_01899 - DNA polymerase III, delta, at 2,041,635 to 2,042,645 _01899 Position (kb) 2040 2041Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2039.073 kb on + strandat 2039.081 kb on + strandat 2039.100 kb on + strandat 2039.100 kb on + strandat 2039.116 kb on - strandat 2039.120 kb on + strandat 2039.266 kb on + strandat 2039.266 kb on + strandat 2039.297 kb on + strandat 2039.298 kb on + strandat 2039.331 kb on + strandat 2039.351 kb on - strandat 2039.352 kb on + strandat 2039.360 kb on - strandat 2039.363 kb on - strandat 2039.365 kb on + strandat 2039.415 kb on - strandat 2039.461 kb on + strandat 2039.469 kb on - strandat 2039.542 kb on + strandat 2039.582 kb on - strandat 2039.606 kb on + strand, within CCNA_01896at 2039.611 kb on + strand, within CCNA_01896at 2039.618 kb on + strand, within CCNA_01896at 2039.621 kb on - strand, within CCNA_01896at 2039.656 kb on + strand, within CCNA_01896at 2039.722 kb on + strand, within CCNA_01896at 2039.736 kb on + strand, within CCNA_01896at 2039.736 kb on + strand, within CCNA_01896at 2039.902 kb on + strandat 2039.904 kb on + strandat 2039.910 kb on - strandat 2039.922 kb on + strandat 2039.922 kb on + strandat 2039.923 kb on - strandat 2039.930 kb on - strandat 2039.930 kb on - strandat 2039.968 kb on - strandat 2040.019 kb on - strandat 2040.058 kb on + strandat 2040.140 kb on + strand, within CCNA_01897at 2040.150 kb on + strand, within CCNA_01897at 2040.174 kb on + strand, within CCNA_01897at 2040.219 kb on + strand, within CCNA_01897at 2040.227 kb on - strand, within CCNA_01897at 2040.227 kb on - strand, within CCNA_01897at 2040.277 kb on + strand, within CCNA_01897at 2040.280 kb on + strand, within CCNA_01897at 2040.303 kb on + strand, within CCNA_01897at 2040.303 kb on + strand, within CCNA_01897at 2040.303 kb on + strand, within CCNA_01897at 2040.311 kb on - strand, within CCNA_01897at 2040.386 kb on + strand, within CCNA_01897at 2040.392 kb on + strand, within CCNA_01897at 2040.480 kb on - strand, within CCNA_01897at 2040.480 kb on - strand, within CCNA_01897at 2040.498 kb on - strand, within CCNA_01897at 2040.508 kb on - strand, within CCNA_01897at 2040.581 kb on + strand, within CCNA_01897at 2040.603 kb on - strand, within CCNA_01897at 2040.608 kb on - strand, within CCNA_01897at 2040.626 kb on + strand, within CCNA_01897at 2040.626 kb on + strand, within CCNA_01897at 2040.644 kb on + strand, within CCNA_01897at 2040.645 kb on - strand, within CCNA_01897at 2040.677 kb on - strand, within CCNA_01897at 2040.709 kb on + strand, within CCNA_01897at 2040.714 kb on + strand, within CCNA_01897at 2040.737 kb on + strandat 2040.752 kb on - strand, within CCNA_01897at 2040.766 kb on + strand, within CCNA_01897at 2040.766 kb on + strand, within CCNA_01897at 2040.777 kb on + strandat 2040.782 kb on + strandat 2040.846 kb on + strandat 2040.859 kb on - strandat 2040.906 kb on - strandat 2040.911 kb on - strandat 2040.927 kb on - strandat 2041.016 kb on - strand, within CCNA_01898at 2041.067 kb on - strand, within CCNA_01898at 2041.099 kb on + strand, within CCNA_01898at 2041.107 kb on - strand, within CCNA_01898at 2041.107 kb on - strand, within CCNA_01898at 2041.154 kb on - strand, within CCNA_01898at 2041.160 kb on + strand, within CCNA_01898at 2041.263 kb on + strand, within CCNA_01898at 2041.283 kb on + strand, within CCNA_01898at 2041.314 kb on - strand, within CCNA_01898at 2041.350 kb on - strand, within CCNA_01898at 2041.374 kb on - strand, within CCNA_01898at 2041.406 kb on - strand, within CCNA_01898at 2041.408 kb on + strand, within CCNA_01898at 2041.413 kb on + strand, within CCNA_01898at 2041.426 kb on - strand, within CCNA_01898at 2041.496 kb on + strand, within CCNA_01898at 2041.512 kb on - strand, within CCNA_01898at 2041.512 kb on - strand, within CCNA_01898at 2041.513 kb on - strandat 2041.574 kb on + strandat 2041.582 kb on - strandat 2041.588 kb on + strandat 2041.624 kb on - strandat 2041.640 kb on + strandat 2041.653 kb on - strandat 2041.678 kb on + strandat 2041.678 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Chlorite 0.5 mM
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2,039,073 + -0.9
2,039,081 + -0.4
2,039,100 + +2.9
2,039,100 + +0.3
2,039,116 - -1.3
2,039,120 + -2.2
2,039,266 + -0.5
2,039,266 + -1.7
2,039,297 + -0.7
2,039,298 + -0.7
2,039,331 + -1.3
2,039,351 - -0.1
2,039,352 + -0.7
2,039,360 - +0.5
2,039,363 - -0.5
2,039,365 + +0.9
2,039,415 - -2.5
2,039,461 + +0.3
2,039,469 - +1.9
2,039,542 + -1.3
2,039,582 - +0.5
2,039,606 + CCNA_01896 0.17 +1.9
2,039,611 + CCNA_01896 0.20 -1.5
2,039,618 + CCNA_01896 0.23 +0.1
2,039,621 - CCNA_01896 0.25 +0.3
2,039,656 + CCNA_01896 0.42 -2.9
2,039,722 + CCNA_01896 0.73 +1.9
2,039,736 + CCNA_01896 0.80 +0.3
2,039,736 + CCNA_01896 0.80 -1.8
2,039,902 + +0.9
2,039,904 + -1.7
2,039,910 - -0.1
2,039,922 + -0.7
2,039,922 + +1.9
2,039,923 - -0.5
2,039,930 - -1.8
2,039,930 - -1.7
2,039,968 - -0.5
2,040,019 - +0.3
2,040,058 + +0.9
2,040,140 + CCNA_01897 0.12 -1.5
2,040,150 + CCNA_01897 0.13 -0.1
2,040,174 + CCNA_01897 0.16 +0.3
2,040,219 + CCNA_01897 0.21 -3.0
2,040,227 - CCNA_01897 0.22 -1.3
2,040,227 - CCNA_01897 0.22 -1.0
2,040,277 + CCNA_01897 0.29 -1.5
2,040,280 + CCNA_01897 0.29 -0.7
2,040,303 + CCNA_01897 0.32 +0.1
2,040,303 + CCNA_01897 0.32 -1.8
2,040,303 + CCNA_01897 0.32 +0.9
2,040,311 - CCNA_01897 0.33 +0.0
2,040,386 + CCNA_01897 0.42 -2.0
2,040,392 + CCNA_01897 0.43 +0.3
2,040,480 - CCNA_01897 0.54 +0.1
2,040,480 - CCNA_01897 0.54 +0.3
2,040,498 - CCNA_01897 0.56 +0.5
2,040,508 - CCNA_01897 0.57 -1.2
2,040,581 + CCNA_01897 0.66 -1.7
2,040,603 - CCNA_01897 0.69 +0.3
2,040,608 - CCNA_01897 0.70 -0.5
2,040,626 + CCNA_01897 0.72 -1.1
2,040,626 + CCNA_01897 0.72 +1.9
2,040,644 + CCNA_01897 0.74 +0.9
2,040,645 - CCNA_01897 0.74 +0.9
2,040,677 - CCNA_01897 0.78 -0.1
2,040,709 + CCNA_01897 0.82 -0.7
2,040,714 + CCNA_01897 0.83 +1.1
2,040,737 + +1.9
2,040,752 - CCNA_01897 0.87 -0.5
2,040,766 + CCNA_01897 0.89 -0.1
2,040,766 + CCNA_01897 0.89 -0.9
2,040,777 + -0.7
2,040,782 + -0.9
2,040,846 + -0.9
2,040,859 - +1.0
2,040,906 - -1.1
2,040,911 - -2.0
2,040,927 - -1.0
2,041,016 - CCNA_01898 0.21 -0.5
2,041,067 - CCNA_01898 0.28 -1.0
2,041,099 + CCNA_01898 0.32 -1.1
2,041,107 - CCNA_01898 0.33 -2.8
2,041,107 - CCNA_01898 0.33 -2.0
2,041,154 - CCNA_01898 0.39 -2.0
2,041,160 + CCNA_01898 0.39 -2.1
2,041,263 + CCNA_01898 0.52 -1.0
2,041,283 + CCNA_01898 0.55 -0.7
2,041,314 - CCNA_01898 0.59 -1.5
2,041,350 - CCNA_01898 0.63 -0.5
2,041,374 - CCNA_01898 0.66 -1.3
2,041,406 - CCNA_01898 0.70 -1.5
2,041,408 + CCNA_01898 0.71 -0.1
2,041,413 + CCNA_01898 0.71 -1.1
2,041,426 - CCNA_01898 0.73 -1.3
2,041,496 + CCNA_01898 0.82 -0.1
2,041,512 - CCNA_01898 0.84 -0.3
2,041,512 - CCNA_01898 0.84 -2.2
2,041,513 - +0.9
2,041,574 + +0.9
2,041,582 - -1.1
2,041,588 + -2.1
2,041,624 - -1.0
2,041,640 + -1.1
2,041,653 - +1.3
2,041,678 + +0.3
2,041,678 + -1.1

Or see this region's nucleotide sequence