Experiment: PYE with Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00015 and CCNA_00016 are separated by 0 nucleotides CCNA_00016 and CCNA_00017 overlap by 4 nucleotides CCNA_00017 and CCNA_00018 are separated by 3 nucleotides CCNA_00018 and CCNA_00019 are separated by 30 nucleotides CCNA_00019 and CCNA_00020 overlap by 4 nucleotides CCNA_00020 and CCNA_03911 overlap by 4 nucleotides
CCNA_00015: CCNA_00015 - molybdenum cofactor biosynthesis protein B, at 17,491 to 18,042
_00015
CCNA_00016: CCNA_00016 - molybdopterin converting factor, large subunit, at 18,043 to 18,495
_00016
CCNA_00017: CCNA_00017 - molybdopterin converting factor, small subunit, at 18,492 to 18,731
_00017
CCNA_00018: CCNA_00018 - molybdenum cofactor biosynthesis protein A, at 18,735 to 19,784
_00018
CCNA_00019: CCNA_00019 - molybdopterin-guanine dinucleotide biosynthesis protein A, at 19,815 to 20,447
_00019
CCNA_00020: CCNA_00020 - hypothetical protein, at 20,444 to 20,668
_00020
CCNA_03911: CCNA_03911 - hypothetical protein, at 20,665 to 20,778
_03911
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 17.760 kb on + strand, within CCNA_00015 at 17.760 kb on + strand, within CCNA_00015 at 17.830 kb on - strand, within CCNA_00015 at 17.840 kb on + strand, within CCNA_00015 at 17.840 kb on + strand, within CCNA_00015 at 17.843 kb on - strand, within CCNA_00015 at 17.848 kb on - strand, within CCNA_00015 at 17.848 kb on - strand, within CCNA_00015 at 17.848 kb on - strand, within CCNA_00015 at 17.886 kb on + strand, within CCNA_00015 at 17.886 kb on + strand, within CCNA_00015 at 17.886 kb on + strand, within CCNA_00015 at 17.900 kb on + strand, within CCNA_00015 at 17.900 kb on + strand, within CCNA_00015 at 17.908 kb on - strand, within CCNA_00015 at 17.908 kb on - strand, within CCNA_00015 at 17.908 kb on - strand, within CCNA_00015 at 17.923 kb on - strand, within CCNA_00015 at 17.923 kb on - strand, within CCNA_00015 at 17.923 kb on - strand, within CCNA_00015 at 17.931 kb on + strand, within CCNA_00015 at 17.966 kb on - strand, within CCNA_00015 at 17.973 kb on - strand, within CCNA_00015 at 17.981 kb on - strand, within CCNA_00015 at 17.987 kb on + strand at 17.987 kb on + strand at 17.995 kb on - strand at 18.000 kb on + strand at 18.009 kb on - strand at 18.013 kb on - strand at 18.023 kb on + strand at 18.031 kb on - strand at 18.048 kb on - strand at 18.059 kb on - strand at 18.082 kb on - strand at 18.082 kb on - strand at 18.087 kb on - strand at 18.101 kb on - strand, within CCNA_00016 at 18.110 kb on - strand, within CCNA_00016 at 18.148 kb on + strand, within CCNA_00016 at 18.148 kb on + strand, within CCNA_00016 at 18.150 kb on + strand, within CCNA_00016 at 18.150 kb on + strand, within CCNA_00016 at 18.178 kb on + strand, within CCNA_00016 at 18.188 kb on - strand, within CCNA_00016 at 18.290 kb on - strand, within CCNA_00016 at 18.367 kb on + strand, within CCNA_00016 at 18.378 kb on + strand, within CCNA_00016 at 18.381 kb on - strand, within CCNA_00016 at 18.383 kb on + strand, within CCNA_00016 at 18.443 kb on + strand, within CCNA_00016 at 18.461 kb on + strand at 18.479 kb on - strand at 18.537 kb on + strand, within CCNA_00017 at 18.592 kb on + strand, within CCNA_00017 at 18.604 kb on + strand, within CCNA_00017 at 18.609 kb on + strand, within CCNA_00017 at 18.617 kb on - strand, within CCNA_00017 at 18.619 kb on + strand, within CCNA_00017 at 18.622 kb on - strand, within CCNA_00017 at 18.622 kb on - strand, within CCNA_00017 at 18.625 kb on + strand, within CCNA_00017 at 18.657 kb on - strand, within CCNA_00017 at 18.657 kb on - strand, within CCNA_00017 at 18.741 kb on - strand at 18.802 kb on + strand at 18.802 kb on + strand at 18.810 kb on - strand at 18.810 kb on - strand at 18.910 kb on - strand, within CCNA_00018 at 18.920 kb on - strand, within CCNA_00018 at 18.920 kb on - strand, within CCNA_00018 at 18.933 kb on + strand, within CCNA_00018 at 18.941 kb on - strand, within CCNA_00018 at 18.941 kb on - strand, within CCNA_00018 at 18.941 kb on - strand, within CCNA_00018 at 18.989 kb on + strand, within CCNA_00018 at 18.992 kb on - strand, within CCNA_00018 at 18.995 kb on + strand, within CCNA_00018 at 19.064 kb on + strand, within CCNA_00018 at 19.105 kb on + strand, within CCNA_00018 at 19.113 kb on - strand, within CCNA_00018 at 19.113 kb on - strand, within CCNA_00018 at 19.115 kb on + strand, within CCNA_00018 at 19.115 kb on + strand, within CCNA_00018 at 19.123 kb on - strand, within CCNA_00018 at 19.123 kb on - strand, within CCNA_00018 at 19.133 kb on - strand, within CCNA_00018 at 19.133 kb on - strand, within CCNA_00018 at 19.143 kb on - strand, within CCNA_00018 at 19.143 kb on - strand, within CCNA_00018 at 19.161 kb on - strand, within CCNA_00018 at 19.161 kb on - strand, within CCNA_00018 at 19.161 kb on - strand, within CCNA_00018 at 19.163 kb on + strand, within CCNA_00018 at 19.163 kb on + strand, within CCNA_00018 at 19.192 kb on - strand, within CCNA_00018 at 19.200 kb on - strand, within CCNA_00018 at 19.200 kb on - strand, within CCNA_00018 at 19.251 kb on - strand, within CCNA_00018 at 19.315 kb on + strand, within CCNA_00018 at 19.335 kb on - strand, within CCNA_00018 at 19.337 kb on + strand, within CCNA_00018 at 19.340 kb on - strand, within CCNA_00018 at 19.342 kb on + strand, within CCNA_00018 at 19.342 kb on + strand, within CCNA_00018 at 19.342 kb on + strand, within CCNA_00018 at 19.342 kb on + strand, within CCNA_00018 at 19.416 kb on + strand, within CCNA_00018 at 19.441 kb on + strand, within CCNA_00018 at 19.444 kb on - strand, within CCNA_00018 at 19.528 kb on + strand, within CCNA_00018 at 19.561 kb on - strand, within CCNA_00018 at 19.578 kb on + strand, within CCNA_00018 at 19.586 kb on + strand, within CCNA_00018 at 19.620 kb on + strand, within CCNA_00018 at 19.640 kb on + strand, within CCNA_00018 at 19.708 kb on - strand at 19.732 kb on - strand at 19.902 kb on + strand, within CCNA_00019 at 19.904 kb on + strand, within CCNA_00019 at 19.910 kb on - strand, within CCNA_00019 at 19.937 kb on + strand, within CCNA_00019 at 19.945 kb on - strand, within CCNA_00019 at 20.000 kb on + strand, within CCNA_00019 at 20.046 kb on + strand, within CCNA_00019 at 20.170 kb on - strand, within CCNA_00019 at 20.200 kb on - strand, within CCNA_00019 at 20.239 kb on + strand, within CCNA_00019 at 20.247 kb on - strand, within CCNA_00019 at 20.247 kb on - strand, within CCNA_00019 at 20.336 kb on - strand, within CCNA_00019 at 20.336 kb on - strand, within CCNA_00019 at 20.340 kb on - strand, within CCNA_00019 at 20.355 kb on + strand, within CCNA_00019 at 20.382 kb on - strand, within CCNA_00019 at 20.434 kb on + strand at 20.450 kb on - strand at 20.574 kb on - strand, within CCNA_00020 at 20.590 kb on - strand, within CCNA_00020 at 20.678 kb on - strand, within CCNA_03911 at 20.694 kb on + strand, within CCNA_03911 at 20.697 kb on - strand, within CCNA_03911 at 20.697 kb on - strand, within CCNA_03911 at 20.738 kb on - strand, within CCNA_03911 at 20.740 kb on + strand, within CCNA_03911 at 20.749 kb on + strand, within CCNA_03911 at 20.749 kb on + strand, within CCNA_03911 at 20.754 kb on + strand, within CCNA_03911 at 20.757 kb on - strand, within CCNA_03911
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Chlorite 0.5 mM remove 17,760 + CCNA_00015 0.49 -0.9 17,760 + CCNA_00015 0.49 -2.5 17,830 - CCNA_00015 0.61 -0.2 17,840 + CCNA_00015 0.63 -1.3 17,840 + CCNA_00015 0.63 -2.4 17,843 - CCNA_00015 0.64 -2.1 17,848 - CCNA_00015 0.65 -1.5 17,848 - CCNA_00015 0.65 -0.3 17,848 - CCNA_00015 0.65 -1.0 17,886 + CCNA_00015 0.72 -2.1 17,886 + CCNA_00015 0.72 +0.2 17,886 + CCNA_00015 0.72 -2.1 17,900 + CCNA_00015 0.74 -0.2 17,900 + CCNA_00015 0.74 -1.6 17,908 - CCNA_00015 0.76 -1.3 17,908 - CCNA_00015 0.76 -1.9 17,908 - CCNA_00015 0.76 -1.3 17,923 - CCNA_00015 0.78 -0.7 17,923 - CCNA_00015 0.78 -2.4 17,923 - CCNA_00015 0.78 -1.3 17,931 + CCNA_00015 0.80 -2.1 17,966 - CCNA_00015 0.86 -2.0 17,973 - CCNA_00015 0.87 -2.5 17,981 - CCNA_00015 0.89 -1.7 17,987 + +0.2 17,987 + -1.5 17,995 - -0.3 18,000 + -1.6 18,009 - +0.5 18,013 - -0.3 18,023 + -0.8 18,031 - +0.4 18,048 - -0.5 18,059 - +0.4 18,082 - -0.8 18,082 - -0.9 18,087 - -0.7 18,101 - CCNA_00016 0.13 -1.2 18,110 - CCNA_00016 0.15 -2.3 18,148 + CCNA_00016 0.23 -2.1 18,148 + CCNA_00016 0.23 +0.2 18,150 + CCNA_00016 0.24 -1.3 18,150 + CCNA_00016 0.24 -1.3 18,178 + CCNA_00016 0.30 -2.8 18,188 - CCNA_00016 0.32 -0.9 18,290 - CCNA_00016 0.55 -1.3 18,367 + CCNA_00016 0.72 -0.6 18,378 + CCNA_00016 0.74 +0.8 18,381 - CCNA_00016 0.75 -1.4 18,383 + CCNA_00016 0.75 -0.5 18,443 + CCNA_00016 0.88 +0.4 18,461 + +2.4 18,479 - -1.7 18,537 + CCNA_00017 0.19 -0.9 18,592 + CCNA_00017 0.42 -0.2 18,604 + CCNA_00017 0.47 -0.9 18,609 + CCNA_00017 0.49 -1.1 18,617 - CCNA_00017 0.52 -0.4 18,619 + CCNA_00017 0.53 -1.8 18,622 - CCNA_00017 0.54 -1.6 18,622 - CCNA_00017 0.54 -1.3 18,625 + CCNA_00017 0.55 -2.6 18,657 - CCNA_00017 0.69 -1.5 18,657 - CCNA_00017 0.69 -2.4 18,741 - +1.1 18,802 + -0.3 18,802 + -2.9 18,810 - -1.0 18,810 - -1.1 18,910 - CCNA_00018 0.17 -2.4 18,920 - CCNA_00018 0.18 -1.5 18,920 - CCNA_00018 0.18 -1.3 18,933 + CCNA_00018 0.19 -2.0 18,941 - CCNA_00018 0.20 -1.1 18,941 - CCNA_00018 0.20 -2.6 18,941 - CCNA_00018 0.20 -2.7 18,989 + CCNA_00018 0.24 +2.7 18,992 - CCNA_00018 0.24 -0.5 18,995 + CCNA_00018 0.25 -0.9 19,064 + CCNA_00018 0.31 -2.7 19,105 + CCNA_00018 0.35 -2.7 19,113 - CCNA_00018 0.36 -1.2 19,113 - CCNA_00018 0.36 -2.2 19,115 + CCNA_00018 0.36 +1.4 19,115 + CCNA_00018 0.36 -2.2 19,123 - CCNA_00018 0.37 -0.8 19,123 - CCNA_00018 0.37 -1.9 19,133 - CCNA_00018 0.38 -2.5 19,133 - CCNA_00018 0.38 -0.3 19,143 - CCNA_00018 0.39 -0.4 19,143 - CCNA_00018 0.39 -0.9 19,161 - CCNA_00018 0.41 -2.4 19,161 - CCNA_00018 0.41 -0.6 19,161 - CCNA_00018 0.41 -2.1 19,163 + CCNA_00018 0.41 -1.4 19,163 + CCNA_00018 0.41 -0.2 19,192 - CCNA_00018 0.44 -1.1 19,200 - CCNA_00018 0.44 -2.2 19,200 - CCNA_00018 0.44 -0.8 19,251 - CCNA_00018 0.49 -0.8 19,315 + CCNA_00018 0.55 -2.1 19,335 - CCNA_00018 0.57 +1.4 19,337 + CCNA_00018 0.57 -1.8 19,340 - CCNA_00018 0.58 -2.2 19,342 + CCNA_00018 0.58 -2.0 19,342 + CCNA_00018 0.58 -1.6 19,342 + CCNA_00018 0.58 -2.9 19,342 + CCNA_00018 0.58 +1.4 19,416 + CCNA_00018 0.65 +2.4 19,441 + CCNA_00018 0.67 +1.4 19,444 - CCNA_00018 0.68 -0.9 19,528 + CCNA_00018 0.76 -0.6 19,561 - CCNA_00018 0.79 -2.4 19,578 + CCNA_00018 0.80 +1.4 19,586 + CCNA_00018 0.81 -0.6 19,620 + CCNA_00018 0.84 -2.1 19,640 + CCNA_00018 0.86 -2.3 19,708 - -1.0 19,732 - -0.2 19,902 + CCNA_00019 0.14 -1.9 19,904 + CCNA_00019 0.14 -1.1 19,910 - CCNA_00019 0.15 +0.1 19,937 + CCNA_00019 0.19 -0.6 19,945 - CCNA_00019 0.21 -0.9 20,000 + CCNA_00019 0.29 -0.8 20,046 + CCNA_00019 0.36 -0.8 20,170 - CCNA_00019 0.56 -1.2 20,200 - CCNA_00019 0.61 -0.5 20,239 + CCNA_00019 0.67 +0.1 20,247 - CCNA_00019 0.68 +0.8 20,247 - CCNA_00019 0.68 -0.6 20,336 - CCNA_00019 0.82 +0.3 20,336 - CCNA_00019 0.82 -0.8 20,340 - CCNA_00019 0.83 -0.1 20,355 + CCNA_00019 0.85 +0.1 20,382 - CCNA_00019 0.90 +0.3 20,434 + -1.8 20,450 - +0.7 20,574 - CCNA_00020 0.58 +1.4 20,590 - CCNA_00020 0.65 -1.0 20,678 - CCNA_03911 0.11 +2.0 20,694 + CCNA_03911 0.25 -1.4 20,697 - CCNA_03911 0.28 +0.5 20,697 - CCNA_03911 0.28 +0.9 20,738 - CCNA_03911 0.64 -1.9 20,740 + CCNA_03911 0.66 -0.0 20,749 + CCNA_03911 0.74 -0.8 20,749 + CCNA_03911 0.74 -0.9 20,754 + CCNA_03911 0.78 -0.4 20,757 - CCNA_03911 0.81 +0.6
Or see this region's nucleotide sequence