Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS22325

Experiment: Agro_defined_trehalose 1x (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS22315 and CA265_RS22320 are separated by 307 nucleotidesCA265_RS22320 and CA265_RS22325 are separated by 61 nucleotidesCA265_RS22325 and CA265_RS22330 are separated by 4 nucleotides CA265_RS22315: CA265_RS22315 - hypothetical protein, at 5,479,969 to 5,480,502 _RS22315 CA265_RS22320: CA265_RS22320 - hypothetical protein, at 5,480,810 to 5,481,016 _RS22320 CA265_RS22325: CA265_RS22325 - secretion protein HlyD, at 5,481,078 to 5,482,238 _RS22325 CA265_RS22330: CA265_RS22330 - peptidase C39, at 5,482,243 to 5,484,354 _RS22330 Position (kb) 5481 5482 5483Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 5480.080 kb on - strand, within CA265_RS22315at 5480.161 kb on - strand, within CA265_RS22315at 5480.161 kb on - strand, within CA265_RS22315at 5480.215 kb on + strand, within CA265_RS22315at 5480.241 kb on - strand, within CA265_RS22315at 5480.253 kb on + strand, within CA265_RS22315at 5480.331 kb on + strand, within CA265_RS22315at 5480.345 kb on - strand, within CA265_RS22315at 5480.402 kb on + strand, within CA265_RS22315at 5480.438 kb on - strand, within CA265_RS22315at 5480.457 kb on + strandat 5480.458 kb on - strandat 5480.588 kb on - strandat 5480.660 kb on - strandat 5480.660 kb on - strandat 5480.708 kb on + strandat 5480.709 kb on - strandat 5480.893 kb on + strand, within CA265_RS22320at 5480.894 kb on - strand, within CA265_RS22320at 5480.899 kb on + strand, within CA265_RS22320at 5480.899 kb on + strand, within CA265_RS22320at 5480.900 kb on - strand, within CA265_RS22320at 5481.029 kb on - strandat 5481.165 kb on + strandat 5481.165 kb on + strandat 5481.219 kb on - strand, within CA265_RS22325at 5481.223 kb on + strand, within CA265_RS22325at 5481.231 kb on - strand, within CA265_RS22325at 5481.233 kb on + strand, within CA265_RS22325at 5481.234 kb on - strand, within CA265_RS22325at 5481.235 kb on + strand, within CA265_RS22325at 5481.235 kb on + strand, within CA265_RS22325at 5481.281 kb on + strand, within CA265_RS22325at 5481.307 kb on + strand, within CA265_RS22325at 5481.329 kb on + strand, within CA265_RS22325at 5481.329 kb on + strand, within CA265_RS22325at 5481.330 kb on - strand, within CA265_RS22325at 5481.516 kb on + strand, within CA265_RS22325at 5481.516 kb on + strand, within CA265_RS22325at 5481.517 kb on - strand, within CA265_RS22325at 5481.517 kb on - strand, within CA265_RS22325at 5481.560 kb on + strand, within CA265_RS22325at 5481.599 kb on + strand, within CA265_RS22325at 5481.637 kb on - strand, within CA265_RS22325at 5481.668 kb on - strand, within CA265_RS22325at 5481.684 kb on + strand, within CA265_RS22325at 5481.686 kb on + strand, within CA265_RS22325at 5481.686 kb on + strand, within CA265_RS22325at 5481.780 kb on + strand, within CA265_RS22325at 5481.780 kb on + strand, within CA265_RS22325at 5481.781 kb on - strand, within CA265_RS22325at 5481.811 kb on + strand, within CA265_RS22325at 5481.820 kb on + strand, within CA265_RS22325at 5481.844 kb on - strand, within CA265_RS22325at 5481.900 kb on + strand, within CA265_RS22325at 5481.936 kb on - strand, within CA265_RS22325at 5481.972 kb on + strand, within CA265_RS22325at 5481.974 kb on + strand, within CA265_RS22325at 5481.979 kb on - strand, within CA265_RS22325at 5482.005 kb on - strand, within CA265_RS22325at 5482.029 kb on - strand, within CA265_RS22325at 5482.040 kb on - strand, within CA265_RS22325at 5482.099 kb on + strand, within CA265_RS22325at 5482.100 kb on - strand, within CA265_RS22325at 5482.159 kb on + strandat 5482.183 kb on + strandat 5482.248 kb on + strandat 5482.269 kb on + strandat 5482.374 kb on + strandat 5482.375 kb on - strandat 5482.385 kb on + strandat 5482.394 kb on + strandat 5482.394 kb on + strandat 5482.413 kb on - strandat 5482.433 kb on + strandat 5482.455 kb on - strand, within CA265_RS22330at 5482.485 kb on + strand, within CA265_RS22330at 5482.485 kb on + strand, within CA265_RS22330at 5482.485 kb on + strand, within CA265_RS22330at 5482.485 kb on + strand, within CA265_RS22330at 5482.486 kb on - strand, within CA265_RS22330at 5482.493 kb on + strand, within CA265_RS22330at 5482.513 kb on + strand, within CA265_RS22330at 5482.513 kb on + strand, within CA265_RS22330at 5482.514 kb on - strand, within CA265_RS22330at 5482.533 kb on - strand, within CA265_RS22330at 5482.546 kb on - strand, within CA265_RS22330at 5482.564 kb on - strand, within CA265_RS22330at 5482.564 kb on - strand, within CA265_RS22330at 5482.566 kb on - strand, within CA265_RS22330at 5482.626 kb on - strand, within CA265_RS22330at 5482.687 kb on - strand, within CA265_RS22330at 5482.737 kb on - strand, within CA265_RS22330at 5482.746 kb on + strand, within CA265_RS22330at 5482.747 kb on - strand, within CA265_RS22330at 5482.747 kb on - strand, within CA265_RS22330at 5482.747 kb on - strand, within CA265_RS22330at 5482.754 kb on - strand, within CA265_RS22330at 5482.770 kb on - strand, within CA265_RS22330at 5482.815 kb on - strand, within CA265_RS22330at 5482.827 kb on + strand, within CA265_RS22330at 5482.827 kb on + strand, within CA265_RS22330at 5482.848 kb on + strand, within CA265_RS22330at 5482.848 kb on + strand, within CA265_RS22330at 5482.957 kb on + strand, within CA265_RS22330at 5482.976 kb on + strand, within CA265_RS22330at 5483.016 kb on + strand, within CA265_RS22330at 5483.066 kb on + strand, within CA265_RS22330at 5483.067 kb on - strand, within CA265_RS22330at 5483.067 kb on - strand, within CA265_RS22330at 5483.124 kb on + strand, within CA265_RS22330at 5483.129 kb on - strand, within CA265_RS22330at 5483.132 kb on - strand, within CA265_RS22330at 5483.132 kb on - strand, within CA265_RS22330at 5483.173 kb on + strand, within CA265_RS22330at 5483.183 kb on + strand, within CA265_RS22330at 5483.186 kb on - strand, within CA265_RS22330at 5483.186 kb on - strand, within CA265_RS22330at 5483.186 kb on - strand, within CA265_RS22330at 5483.214 kb on + strand, within CA265_RS22330at 5483.215 kb on - strand, within CA265_RS22330

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Per-strain Table

Position Strand Gene LocusTag Fraction Agro_defined_trehalose 1x (C)
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5,480,080 - CA265_RS22315 0.21 +0.3
5,480,161 - CA265_RS22315 0.36 -2.1
5,480,161 - CA265_RS22315 0.36 +0.6
5,480,215 + CA265_RS22315 0.46 -0.1
5,480,241 - CA265_RS22315 0.51 +1.3
5,480,253 + CA265_RS22315 0.53 -0.5
5,480,331 + CA265_RS22315 0.68 -0.4
5,480,345 - CA265_RS22315 0.70 +0.3
5,480,402 + CA265_RS22315 0.81 -1.6
5,480,438 - CA265_RS22315 0.88 -2.6
5,480,457 + -2.8
5,480,458 - +0.7
5,480,588 - +2.3
5,480,660 - -0.4
5,480,660 - -0.2
5,480,708 + -0.7
5,480,709 - +0.3
5,480,893 + CA265_RS22320 0.40 +0.9
5,480,894 - CA265_RS22320 0.41 +1.3
5,480,899 + CA265_RS22320 0.43 +0.2
5,480,899 + CA265_RS22320 0.43 -0.2
5,480,900 - CA265_RS22320 0.43 +0.6
5,481,029 - +0.3
5,481,165 + +1.0
5,481,165 + +1.4
5,481,219 - CA265_RS22325 0.12 -1.2
5,481,223 + CA265_RS22325 0.12 +1.2
5,481,231 - CA265_RS22325 0.13 -1.6
5,481,233 + CA265_RS22325 0.13 +1.2
5,481,234 - CA265_RS22325 0.13 -1.0
5,481,235 + CA265_RS22325 0.14 -0.4
5,481,235 + CA265_RS22325 0.14 +0.1
5,481,281 + CA265_RS22325 0.17 -0.0
5,481,307 + CA265_RS22325 0.20 -2.1
5,481,329 + CA265_RS22325 0.22 -0.2
5,481,329 + CA265_RS22325 0.22 +1.2
5,481,330 - CA265_RS22325 0.22 +0.3
5,481,516 + CA265_RS22325 0.38 +0.4
5,481,516 + CA265_RS22325 0.38 +1.0
5,481,517 - CA265_RS22325 0.38 -0.9
5,481,517 - CA265_RS22325 0.38 -1.4
5,481,560 + CA265_RS22325 0.42 -0.3
5,481,599 + CA265_RS22325 0.45 -0.5
5,481,637 - CA265_RS22325 0.48 +1.1
5,481,668 - CA265_RS22325 0.51 -0.6
5,481,684 + CA265_RS22325 0.52 -1.7
5,481,686 + CA265_RS22325 0.52 +0.8
5,481,686 + CA265_RS22325 0.52 -2.9
5,481,780 + CA265_RS22325 0.60 +0.5
5,481,780 + CA265_RS22325 0.60 -2.1
5,481,781 - CA265_RS22325 0.61 +0.0
5,481,811 + CA265_RS22325 0.63 +0.6
5,481,820 + CA265_RS22325 0.64 +2.0
5,481,844 - CA265_RS22325 0.66 -0.9
5,481,900 + CA265_RS22325 0.71 +0.0
5,481,936 - CA265_RS22325 0.74 -4.1
5,481,972 + CA265_RS22325 0.77 +1.0
5,481,974 + CA265_RS22325 0.77 -0.4
5,481,979 - CA265_RS22325 0.78 -2.4
5,482,005 - CA265_RS22325 0.80 -0.9
5,482,029 - CA265_RS22325 0.82 +1.2
5,482,040 - CA265_RS22325 0.83 -1.4
5,482,099 + CA265_RS22325 0.88 +2.3
5,482,100 - CA265_RS22325 0.88 -2.2
5,482,159 + +0.0
5,482,183 + +0.2
5,482,248 + -0.7
5,482,269 + -0.3
5,482,374 + -2.1
5,482,375 - -2.2
5,482,385 + -0.8
5,482,394 + -0.1
5,482,394 + -0.6
5,482,413 - -2.2
5,482,433 + +2.1
5,482,455 - CA265_RS22330 0.10 +0.5
5,482,485 + CA265_RS22330 0.11 -0.9
5,482,485 + CA265_RS22330 0.11 -4.0
5,482,485 + CA265_RS22330 0.11 -0.1
5,482,485 + CA265_RS22330 0.11 -0.2
5,482,486 - CA265_RS22330 0.12 -0.2
5,482,493 + CA265_RS22330 0.12 +0.9
5,482,513 + CA265_RS22330 0.13 -0.6
5,482,513 + CA265_RS22330 0.13 -1.4
5,482,514 - CA265_RS22330 0.13 +1.5
5,482,533 - CA265_RS22330 0.14 +0.8
5,482,546 - CA265_RS22330 0.14 +0.1
5,482,564 - CA265_RS22330 0.15 +0.4
5,482,564 - CA265_RS22330 0.15 +0.5
5,482,566 - CA265_RS22330 0.15 +0.1
5,482,626 - CA265_RS22330 0.18 +2.1
5,482,687 - CA265_RS22330 0.21 -0.2
5,482,737 - CA265_RS22330 0.23 +2.8
5,482,746 + CA265_RS22330 0.24 +0.8
5,482,747 - CA265_RS22330 0.24 +0.9
5,482,747 - CA265_RS22330 0.24 +0.6
5,482,747 - CA265_RS22330 0.24 +1.4
5,482,754 - CA265_RS22330 0.24 -0.4
5,482,770 - CA265_RS22330 0.25 +2.1
5,482,815 - CA265_RS22330 0.27 +1.7
5,482,827 + CA265_RS22330 0.28 +0.1
5,482,827 + CA265_RS22330 0.28 +0.7
5,482,848 + CA265_RS22330 0.29 -1.0
5,482,848 + CA265_RS22330 0.29 +3.8
5,482,957 + CA265_RS22330 0.34 +0.3
5,482,976 + CA265_RS22330 0.35 -3.4
5,483,016 + CA265_RS22330 0.37 -0.8
5,483,066 + CA265_RS22330 0.39 +1.3
5,483,067 - CA265_RS22330 0.39 +1.6
5,483,067 - CA265_RS22330 0.39 +1.7
5,483,124 + CA265_RS22330 0.42 -3.9
5,483,129 - CA265_RS22330 0.42 -1.1
5,483,132 - CA265_RS22330 0.42 -0.0
5,483,132 - CA265_RS22330 0.42 -0.2
5,483,173 + CA265_RS22330 0.44 +0.6
5,483,183 + CA265_RS22330 0.45 -2.5
5,483,186 - CA265_RS22330 0.45 +0.9
5,483,186 - CA265_RS22330 0.45 +1.3
5,483,186 - CA265_RS22330 0.45 +0.2
5,483,214 + CA265_RS22330 0.46 +0.7
5,483,215 - CA265_RS22330 0.46 +0.2

Or see this region's nucleotide sequence