Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04100

Experiment: Agro_defined_trehalose 1x (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS04095 and CA265_RS04100 are separated by 104 nucleotidesCA265_RS04100 and CA265_RS04105 overlap by 17 nucleotides CA265_RS04095: CA265_RS04095 - nitrite reductase, at 985,147 to 987,237 _RS04095 CA265_RS04100: CA265_RS04100 - uroporphyrinogen-III C-methyltransferase, at 987,342 to 988,112 _RS04100 CA265_RS04105: CA265_RS04105 - siroheme synthase, at 988,096 to 989,607 _RS04105 Position (kb) 987 988 989Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 986.343 kb on + strand, within CA265_RS04095at 986.368 kb on - strand, within CA265_RS04095at 986.368 kb on - strand, within CA265_RS04095at 986.374 kb on - strand, within CA265_RS04095at 986.383 kb on - strand, within CA265_RS04095at 986.429 kb on - strand, within CA265_RS04095at 986.604 kb on + strand, within CA265_RS04095at 986.604 kb on + strand, within CA265_RS04095at 986.634 kb on - strand, within CA265_RS04095at 986.634 kb on - strand, within CA265_RS04095at 986.637 kb on + strand, within CA265_RS04095at 986.638 kb on - strand, within CA265_RS04095at 986.638 kb on - strand, within CA265_RS04095at 986.682 kb on - strand, within CA265_RS04095at 986.731 kb on + strand, within CA265_RS04095at 986.787 kb on - strand, within CA265_RS04095at 986.829 kb on - strand, within CA265_RS04095at 986.876 kb on + strand, within CA265_RS04095at 986.898 kb on - strand, within CA265_RS04095at 986.898 kb on - strand, within CA265_RS04095at 986.976 kb on + strand, within CA265_RS04095at 986.981 kb on - strand, within CA265_RS04095at 987.022 kb on - strand, within CA265_RS04095at 987.034 kb on - strandat 987.034 kb on - strandat 987.077 kb on - strandat 987.081 kb on - strandat 987.129 kb on - strandat 987.251 kb on - strandat 987.251 kb on - strandat 987.416 kb on - strandat 987.416 kb on - strandat 987.457 kb on - strand, within CA265_RS04100at 987.676 kb on - strand, within CA265_RS04100at 987.676 kb on - strand, within CA265_RS04100at 987.676 kb on - strand, within CA265_RS04100at 987.725 kb on - strand, within CA265_RS04100at 987.825 kb on + strand, within CA265_RS04100at 987.974 kb on - strand, within CA265_RS04100at 988.020 kb on - strand, within CA265_RS04100at 988.023 kb on - strand, within CA265_RS04100at 988.088 kb on + strandat 988.095 kb on + strandat 988.096 kb on - strandat 988.178 kb on + strandat 988.197 kb on + strandat 988.202 kb on + strandat 988.205 kb on + strandat 988.292 kb on + strand, within CA265_RS04105at 988.310 kb on - strand, within CA265_RS04105at 988.365 kb on - strand, within CA265_RS04105at 988.365 kb on - strand, within CA265_RS04105at 988.365 kb on - strand, within CA265_RS04105at 988.407 kb on + strand, within CA265_RS04105at 988.414 kb on - strand, within CA265_RS04105at 988.418 kb on + strand, within CA265_RS04105at 988.477 kb on - strand, within CA265_RS04105at 988.635 kb on + strand, within CA265_RS04105at 988.658 kb on + strand, within CA265_RS04105at 988.659 kb on - strand, within CA265_RS04105at 988.695 kb on + strand, within CA265_RS04105at 988.778 kb on + strand, within CA265_RS04105at 988.856 kb on + strand, within CA265_RS04105at 988.857 kb on - strand, within CA265_RS04105at 988.886 kb on + strand, within CA265_RS04105at 989.017 kb on - strand, within CA265_RS04105at 989.051 kb on + strand, within CA265_RS04105

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Per-strain Table

Position Strand Gene LocusTag Fraction Agro_defined_trehalose 1x (C)
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986,343 + CA265_RS04095 0.57 -0.7
986,368 - CA265_RS04095 0.58 -5.2
986,368 - CA265_RS04095 0.58 -3.6
986,374 - CA265_RS04095 0.59 -3.8
986,383 - CA265_RS04095 0.59 -4.8
986,429 - CA265_RS04095 0.61 -4.4
986,604 + CA265_RS04095 0.70 -0.3
986,604 + CA265_RS04095 0.70 -0.3
986,634 - CA265_RS04095 0.71 -2.4
986,634 - CA265_RS04095 0.71 -5.8
986,637 + CA265_RS04095 0.71 -1.3
986,638 - CA265_RS04095 0.71 -3.7
986,638 - CA265_RS04095 0.71 -3.6
986,682 - CA265_RS04095 0.73 -5.9
986,731 + CA265_RS04095 0.76 -0.3
986,787 - CA265_RS04095 0.78 -4.2
986,829 - CA265_RS04095 0.80 -3.1
986,876 + CA265_RS04095 0.83 -1.3
986,898 - CA265_RS04095 0.84 -5.1
986,898 - CA265_RS04095 0.84 -4.4
986,976 + CA265_RS04095 0.87 -1.5
986,981 - CA265_RS04095 0.88 -2.4
987,022 - CA265_RS04095 0.90 -4.4
987,034 - -4.6
987,034 - -5.6
987,077 - -3.0
987,081 - -3.3
987,129 - -4.4
987,251 - -4.4
987,251 - -6.4
987,416 - -3.3
987,416 - -4.8
987,457 - CA265_RS04100 0.15 -2.1
987,676 - CA265_RS04100 0.43 -2.9
987,676 - CA265_RS04100 0.43 -0.7
987,676 - CA265_RS04100 0.43 -5.4
987,725 - CA265_RS04100 0.50 -2.4
987,825 + CA265_RS04100 0.63 +0.8
987,974 - CA265_RS04100 0.82 -3.4
988,020 - CA265_RS04100 0.88 -4.0
988,023 - CA265_RS04100 0.88 -1.9
988,088 + -0.0
988,095 + +0.6
988,096 - -3.5
988,178 + -3.6
988,197 + -4.3
988,202 + -3.3
988,205 + -2.2
988,292 + CA265_RS04105 0.13 -2.7
988,310 - CA265_RS04105 0.14 -3.8
988,365 - CA265_RS04105 0.18 -4.6
988,365 - CA265_RS04105 0.18 -4.8
988,365 - CA265_RS04105 0.18 -4.6
988,407 + CA265_RS04105 0.21 -1.4
988,414 - CA265_RS04105 0.21 +0.7
988,418 + CA265_RS04105 0.21 -3.7
988,477 - CA265_RS04105 0.25 -3.6
988,635 + CA265_RS04105 0.36 -2.7
988,658 + CA265_RS04105 0.37 -1.7
988,659 - CA265_RS04105 0.37 -4.2
988,695 + CA265_RS04105 0.40 +0.0
988,778 + CA265_RS04105 0.45 -2.0
988,856 + CA265_RS04105 0.50 -4.8
988,857 - CA265_RS04105 0.50 -2.2
988,886 + CA265_RS04105 0.52 -5.4
989,017 - CA265_RS04105 0.61 -4.5
989,051 + CA265_RS04105 0.63 -4.6

Or see this region's nucleotide sequence