Experiment: Agro_defined_trehalose 1x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02055 and CA265_RS02060 are separated by 30 nucleotides CA265_RS02060 and CA265_RS02065 are separated by 37 nucleotides CA265_RS02065 and CA265_RS02070 are separated by 170 nucleotides
CA265_RS02055: CA265_RS02055 - DNA ligase (NAD(+)) LigA, at 519,277 to 521,292
_RS02055
CA265_RS02060: CA265_RS02060 - hypothetical protein, at 521,323 to 522,825
_RS02060
CA265_RS02065: CA265_RS02065 - hypothetical protein, at 522,863 to 523,537
_RS02065
CA265_RS02070: CA265_RS02070 - tyrosine--tRNA ligase, at 523,708 to 524,994
_RS02070
Position (kb) 521
522
523 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 521.302 kb on - strand at 521.304 kb on - strand at 521.395 kb on - strand at 521.398 kb on - strand at 521.442 kb on - strand at 521.517 kb on - strand, within CA265_RS02060 at 521.517 kb on - strand, within CA265_RS02060 at 521.518 kb on + strand, within CA265_RS02060 at 521.518 kb on + strand, within CA265_RS02060 at 521.519 kb on - strand, within CA265_RS02060 at 521.519 kb on - strand, within CA265_RS02060 at 521.519 kb on - strand, within CA265_RS02060 at 521.519 kb on - strand, within CA265_RS02060 at 521.519 kb on - strand, within CA265_RS02060 at 521.535 kb on + strand, within CA265_RS02060 at 521.619 kb on + strand, within CA265_RS02060 at 521.619 kb on + strand, within CA265_RS02060 at 521.620 kb on - strand, within CA265_RS02060 at 521.620 kb on - strand at 521.620 kb on - strand, within CA265_RS02060 at 521.620 kb on - strand, within CA265_RS02060 at 521.626 kb on - strand, within CA265_RS02060 at 521.652 kb on - strand, within CA265_RS02060 at 521.676 kb on - strand, within CA265_RS02060 at 521.709 kb on + strand, within CA265_RS02060 at 521.709 kb on + strand at 521.710 kb on - strand, within CA265_RS02060 at 521.748 kb on + strand, within CA265_RS02060 at 521.791 kb on - strand, within CA265_RS02060 at 521.798 kb on + strand, within CA265_RS02060 at 521.798 kb on + strand, within CA265_RS02060 at 521.799 kb on - strand, within CA265_RS02060 at 521.799 kb on - strand, within CA265_RS02060 at 521.799 kb on - strand, within CA265_RS02060 at 521.802 kb on + strand, within CA265_RS02060 at 521.806 kb on - strand, within CA265_RS02060 at 521.868 kb on + strand, within CA265_RS02060 at 521.871 kb on + strand, within CA265_RS02060 at 521.899 kb on - strand, within CA265_RS02060 at 521.904 kb on + strand, within CA265_RS02060 at 521.905 kb on - strand, within CA265_RS02060 at 521.907 kb on - strand, within CA265_RS02060 at 521.974 kb on + strand, within CA265_RS02060 at 522.006 kb on + strand, within CA265_RS02060 at 522.147 kb on + strand, within CA265_RS02060 at 522.231 kb on + strand, within CA265_RS02060 at 522.232 kb on - strand, within CA265_RS02060 at 522.316 kb on + strand, within CA265_RS02060 at 522.414 kb on - strand, within CA265_RS02060 at 522.414 kb on - strand, within CA265_RS02060 at 522.414 kb on - strand, within CA265_RS02060 at 522.431 kb on + strand, within CA265_RS02060 at 522.452 kb on - strand, within CA265_RS02060 at 522.513 kb on - strand, within CA265_RS02060 at 522.535 kb on - strand, within CA265_RS02060 at 522.535 kb on - strand, within CA265_RS02060 at 522.544 kb on - strand, within CA265_RS02060 at 522.612 kb on + strand, within CA265_RS02060 at 522.682 kb on + strand at 522.688 kb on + strand at 522.688 kb on + strand at 522.713 kb on + strand at 522.714 kb on - strand at 522.754 kb on - strand at 522.775 kb on - strand at 522.811 kb on + strand at 522.850 kb on + strand at 522.853 kb on - strand at 522.902 kb on - strand at 522.902 kb on - strand at 522.903 kb on + strand at 522.947 kb on - strand at 522.971 kb on + strand, within CA265_RS02065 at 523.043 kb on + strand, within CA265_RS02065 at 523.043 kb on + strand, within CA265_RS02065 at 523.044 kb on - strand, within CA265_RS02065 at 523.055 kb on - strand, within CA265_RS02065 at 523.055 kb on - strand, within CA265_RS02065 at 523.165 kb on - strand, within CA265_RS02065 at 523.175 kb on + strand, within CA265_RS02065 at 523.262 kb on - strand, within CA265_RS02065 at 523.271 kb on + strand, within CA265_RS02065 at 523.271 kb on + strand, within CA265_RS02065 at 523.272 kb on - strand, within CA265_RS02065 at 523.274 kb on - strand, within CA265_RS02065 at 523.274 kb on - strand, within CA265_RS02065 at 523.291 kb on + strand, within CA265_RS02065 at 523.350 kb on - strand, within CA265_RS02065 at 523.498 kb on + strand at 523.499 kb on - strand at 523.518 kb on + strand at 523.568 kb on + strand at 523.599 kb on + strand at 523.600 kb on - strand at 523.638 kb on + strand at 523.639 kb on - strand at 523.660 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Agro_defined_trehalose 1x (C) remove 521,302 - -0.2 521,304 - -1.0 521,395 - -0.0 521,398 - -1.7 521,442 - -0.7 521,517 - CA265_RS02060 0.13 -3.0 521,517 - CA265_RS02060 0.13 +0.2 521,518 + CA265_RS02060 0.13 +1.2 521,518 + CA265_RS02060 0.13 -1.6 521,519 - CA265_RS02060 0.13 -2.6 521,519 - CA265_RS02060 0.13 +1.6 521,519 - CA265_RS02060 0.13 -0.1 521,519 - CA265_RS02060 0.13 +0.2 521,519 - CA265_RS02060 0.13 -0.4 521,535 + CA265_RS02060 0.14 +0.6 521,619 + CA265_RS02060 0.20 +0.1 521,619 + CA265_RS02060 0.20 +0.5 521,620 - CA265_RS02060 0.20 -1.0 521,620 - +0.9 521,620 - CA265_RS02060 0.20 -0.2 521,620 - CA265_RS02060 0.20 -0.1 521,626 - CA265_RS02060 0.20 +1.8 521,652 - CA265_RS02060 0.22 -1.1 521,676 - CA265_RS02060 0.23 -0.7 521,709 + CA265_RS02060 0.26 +0.1 521,709 + +1.9 521,710 - CA265_RS02060 0.26 +0.2 521,748 + CA265_RS02060 0.28 -0.3 521,791 - CA265_RS02060 0.31 +1.1 521,798 + CA265_RS02060 0.32 -0.6 521,798 + CA265_RS02060 0.32 -1.0 521,799 - CA265_RS02060 0.32 +0.6 521,799 - CA265_RS02060 0.32 +0.4 521,799 - CA265_RS02060 0.32 -1.2 521,802 + CA265_RS02060 0.32 -3.1 521,806 - CA265_RS02060 0.32 +0.1 521,868 + CA265_RS02060 0.36 -0.3 521,871 + CA265_RS02060 0.36 -0.3 521,899 - CA265_RS02060 0.38 +2.0 521,904 + CA265_RS02060 0.39 -0.5 521,905 - CA265_RS02060 0.39 -0.7 521,907 - CA265_RS02060 0.39 +1.2 521,974 + CA265_RS02060 0.43 -0.6 522,006 + CA265_RS02060 0.45 +1.9 522,147 + CA265_RS02060 0.55 +0.2 522,231 + CA265_RS02060 0.60 +0.9 522,232 - CA265_RS02060 0.60 +0.0 522,316 + CA265_RS02060 0.66 +0.4 522,414 - CA265_RS02060 0.73 -0.4 522,414 - CA265_RS02060 0.73 +0.7 522,414 - CA265_RS02060 0.73 +0.9 522,431 + CA265_RS02060 0.74 +2.2 522,452 - CA265_RS02060 0.75 -1.8 522,513 - CA265_RS02060 0.79 -0.6 522,535 - CA265_RS02060 0.81 -0.2 522,535 - CA265_RS02060 0.81 -0.3 522,544 - CA265_RS02060 0.81 -1.8 522,612 + CA265_RS02060 0.86 +1.3 522,682 + +1.0 522,688 + -2.5 522,688 + -0.4 522,713 + +0.1 522,714 - -1.6 522,754 - -1.4 522,775 - -0.1 522,811 + +1.6 522,850 + +0.4 522,853 - +0.2 522,902 - -0.0 522,902 - -0.1 522,903 + +0.8 522,947 - +0.5 522,971 + CA265_RS02065 0.16 -0.1 523,043 + CA265_RS02065 0.27 -1.4 523,043 + CA265_RS02065 0.27 -0.5 523,044 - CA265_RS02065 0.27 -0.6 523,055 - CA265_RS02065 0.28 -0.5 523,055 - CA265_RS02065 0.28 +1.7 523,165 - CA265_RS02065 0.45 -1.3 523,175 + CA265_RS02065 0.46 +0.6 523,262 - CA265_RS02065 0.59 +0.4 523,271 + CA265_RS02065 0.60 +0.3 523,271 + CA265_RS02065 0.60 +0.4 523,272 - CA265_RS02065 0.61 -3.2 523,274 - CA265_RS02065 0.61 -0.3 523,274 - CA265_RS02065 0.61 +0.9 523,291 + CA265_RS02065 0.63 -0.7 523,350 - CA265_RS02065 0.72 +0.3 523,498 + +0.0 523,499 - -2.5 523,518 + +0.2 523,568 + -0.7 523,599 + -1.5 523,600 - +0.5 523,638 + +0.5 523,639 - +0.6 523,660 + +1.0
Or see this region's nucleotide sequence