Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01800

Experiment: Agro_defined_trehalose 1x (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01795 and CA265_RS01800 are separated by 58 nucleotidesCA265_RS01800 and CA265_RS01805 are separated by 5 nucleotides CA265_RS01795: CA265_RS01795 - ABC transporter, at 448,544 to 449,821 _RS01795 CA265_RS01800: CA265_RS01800 - ABC transporter permease, at 449,880 to 450,734 _RS01800 CA265_RS01805: CA265_RS01805 - hypothetical protein, at 450,740 to 451,921 _RS01805 Position (kb) 449 450 451Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 448.922 kb on - strand, within CA265_RS01795at 448.922 kb on - strand, within CA265_RS01795at 448.925 kb on + strand, within CA265_RS01795at 448.925 kb on + strand, within CA265_RS01795at 448.929 kb on + strand, within CA265_RS01795at 448.929 kb on + strand, within CA265_RS01795at 448.930 kb on - strand, within CA265_RS01795at 448.941 kb on - strand, within CA265_RS01795at 448.988 kb on - strand, within CA265_RS01795at 449.004 kb on - strand, within CA265_RS01795at 449.035 kb on + strand, within CA265_RS01795at 449.194 kb on + strand, within CA265_RS01795at 449.252 kb on + strand, within CA265_RS01795at 449.255 kb on + strand, within CA265_RS01795at 449.431 kb on + strand, within CA265_RS01795at 449.467 kb on + strand, within CA265_RS01795at 449.468 kb on - strand, within CA265_RS01795at 449.481 kb on - strand, within CA265_RS01795at 449.544 kb on - strand, within CA265_RS01795at 449.687 kb on - strand, within CA265_RS01795at 449.725 kb on - strandat 449.762 kb on + strandat 449.805 kb on - strandat 449.815 kb on + strandat 449.834 kb on + strandat 449.861 kb on + strandat 449.861 kb on + strandat 449.862 kb on - strandat 449.966 kb on - strand, within CA265_RS01800at 449.984 kb on + strand, within CA265_RS01800at 449.984 kb on + strand, within CA265_RS01800at 450.044 kb on + strand, within CA265_RS01800at 450.105 kb on + strand, within CA265_RS01800at 450.127 kb on - strand, within CA265_RS01800at 450.188 kb on + strand, within CA265_RS01800at 450.226 kb on - strand, within CA265_RS01800at 450.290 kb on - strand, within CA265_RS01800at 450.292 kb on + strand, within CA265_RS01800at 450.293 kb on - strand, within CA265_RS01800at 450.301 kb on - strand, within CA265_RS01800at 450.303 kb on + strand, within CA265_RS01800at 450.304 kb on - strand, within CA265_RS01800at 450.356 kb on + strand, within CA265_RS01800at 450.361 kb on - strand, within CA265_RS01800at 450.368 kb on + strand, within CA265_RS01800at 450.388 kb on - strand, within CA265_RS01800at 450.417 kb on - strand, within CA265_RS01800at 450.480 kb on - strand, within CA265_RS01800at 450.482 kb on - strand, within CA265_RS01800at 450.515 kb on + strand, within CA265_RS01800at 450.515 kb on + strand, within CA265_RS01800at 450.515 kb on + strand, within CA265_RS01800at 450.515 kb on + strand, within CA265_RS01800at 450.608 kb on - strand, within CA265_RS01800at 450.639 kb on + strand, within CA265_RS01800at 450.679 kb on - strandat 450.699 kb on - strandat 450.729 kb on - strandat 450.734 kb on + strandat 450.735 kb on - strandat 450.738 kb on + strandat 450.790 kb on + strandat 450.791 kb on - strandat 450.796 kb on + strandat 450.844 kb on + strandat 450.875 kb on + strand, within CA265_RS01805at 450.875 kb on + strand, within CA265_RS01805at 450.963 kb on - strand, within CA265_RS01805at 451.056 kb on - strand, within CA265_RS01805at 451.107 kb on - strand, within CA265_RS01805at 451.184 kb on + strand, within CA265_RS01805at 451.233 kb on - strand, within CA265_RS01805at 451.251 kb on + strand, within CA265_RS01805at 451.252 kb on - strand, within CA265_RS01805at 451.252 kb on - strand, within CA265_RS01805at 451.254 kb on - strand, within CA265_RS01805at 451.262 kb on + strand, within CA265_RS01805at 451.262 kb on + strand, within CA265_RS01805at 451.274 kb on + strand, within CA265_RS01805at 451.285 kb on + strand, within CA265_RS01805at 451.285 kb on + strand, within CA265_RS01805at 451.286 kb on - strand, within CA265_RS01805at 451.301 kb on - strand, within CA265_RS01805at 451.301 kb on - strand, within CA265_RS01805at 451.303 kb on - strand, within CA265_RS01805at 451.303 kb on - strand, within CA265_RS01805at 451.303 kb on - strand, within CA265_RS01805at 451.303 kb on - strand, within CA265_RS01805at 451.359 kb on - strand, within CA265_RS01805at 451.365 kb on + strand, within CA265_RS01805at 451.365 kb on + strand, within CA265_RS01805at 451.377 kb on - strand, within CA265_RS01805at 451.402 kb on + strand, within CA265_RS01805at 451.406 kb on + strand, within CA265_RS01805at 451.411 kb on - strand, within CA265_RS01805at 451.411 kb on - strand, within CA265_RS01805at 451.439 kb on + strand, within CA265_RS01805at 451.492 kb on + strand, within CA265_RS01805at 451.493 kb on - strand, within CA265_RS01805at 451.510 kb on + strand, within CA265_RS01805at 451.554 kb on - strand, within CA265_RS01805at 451.591 kb on - strand, within CA265_RS01805at 451.641 kb on - strand, within CA265_RS01805at 451.649 kb on - strand, within CA265_RS01805at 451.723 kb on + strand, within CA265_RS01805

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Per-strain Table

Position Strand Gene LocusTag Fraction Agro_defined_trehalose 1x (C)
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448,922 - CA265_RS01795 0.30 +0.8
448,922 - CA265_RS01795 0.30 -1.8
448,925 + CA265_RS01795 0.30 -0.2
448,925 + CA265_RS01795 0.30 +0.2
448,929 + CA265_RS01795 0.30 -2.2
448,929 + CA265_RS01795 0.30 +2.1
448,930 - CA265_RS01795 0.30 -3.3
448,941 - CA265_RS01795 0.31 +0.9
448,988 - CA265_RS01795 0.35 -1.3
449,004 - CA265_RS01795 0.36 -0.7
449,035 + CA265_RS01795 0.38 +0.8
449,194 + CA265_RS01795 0.51 +1.8
449,252 + CA265_RS01795 0.55 -0.1
449,255 + CA265_RS01795 0.56 -1.2
449,431 + CA265_RS01795 0.69 +0.7
449,467 + CA265_RS01795 0.72 -0.6
449,468 - CA265_RS01795 0.72 -1.1
449,481 - CA265_RS01795 0.73 -1.2
449,544 - CA265_RS01795 0.78 +2.3
449,687 - CA265_RS01795 0.89 +1.5
449,725 - -2.1
449,762 + -0.5
449,805 - -3.8
449,815 + -3.8
449,834 + -2.6
449,861 + +0.2
449,861 + -2.1
449,862 - +0.5
449,966 - CA265_RS01800 0.10 +0.2
449,984 + CA265_RS01800 0.12 +0.1
449,984 + CA265_RS01800 0.12 +0.6
450,044 + CA265_RS01800 0.19 -1.4
450,105 + CA265_RS01800 0.26 +0.3
450,127 - CA265_RS01800 0.29 -0.2
450,188 + CA265_RS01800 0.36 -0.8
450,226 - CA265_RS01800 0.40 -0.1
450,290 - CA265_RS01800 0.48 -3.4
450,292 + CA265_RS01800 0.48 -0.5
450,293 - CA265_RS01800 0.48 +0.6
450,301 - CA265_RS01800 0.49 -2.3
450,303 + CA265_RS01800 0.49 +0.6
450,304 - CA265_RS01800 0.50 -0.4
450,356 + CA265_RS01800 0.56 -1.2
450,361 - CA265_RS01800 0.56 -0.0
450,368 + CA265_RS01800 0.57 -0.7
450,388 - CA265_RS01800 0.59 +2.4
450,417 - CA265_RS01800 0.63 +0.5
450,480 - CA265_RS01800 0.70 +0.8
450,482 - CA265_RS01800 0.70 +0.0
450,515 + CA265_RS01800 0.74 -0.1
450,515 + CA265_RS01800 0.74 -0.5
450,515 + CA265_RS01800 0.74 -1.0
450,515 + CA265_RS01800 0.74 -2.9
450,608 - CA265_RS01800 0.85 +0.7
450,639 + CA265_RS01800 0.89 -0.0
450,679 - +1.6
450,699 - +0.4
450,729 - -0.3
450,734 + -3.4
450,735 - -1.9
450,738 + +1.2
450,790 + -1.5
450,791 - -1.6
450,796 + -0.2
450,844 + -0.5
450,875 + CA265_RS01805 0.11 +2.5
450,875 + CA265_RS01805 0.11 -0.2
450,963 - CA265_RS01805 0.19 -0.7
451,056 - CA265_RS01805 0.27 -0.7
451,107 - CA265_RS01805 0.31 -0.3
451,184 + CA265_RS01805 0.38 -0.8
451,233 - CA265_RS01805 0.42 +0.7
451,251 + CA265_RS01805 0.43 -4.4
451,252 - CA265_RS01805 0.43 -0.7
451,252 - CA265_RS01805 0.43 -3.1
451,254 - CA265_RS01805 0.43 +1.6
451,262 + CA265_RS01805 0.44 -1.4
451,262 + CA265_RS01805 0.44 -0.7
451,274 + CA265_RS01805 0.45 -3.8
451,285 + CA265_RS01805 0.46 -0.4
451,285 + CA265_RS01805 0.46 -0.1
451,286 - CA265_RS01805 0.46 -2.5
451,301 - CA265_RS01805 0.47 -0.6
451,301 - CA265_RS01805 0.47 +0.2
451,303 - CA265_RS01805 0.48 -1.9
451,303 - CA265_RS01805 0.48 -1.3
451,303 - CA265_RS01805 0.48 +1.5
451,303 - CA265_RS01805 0.48 -0.7
451,359 - CA265_RS01805 0.52 -3.4
451,365 + CA265_RS01805 0.53 +0.1
451,365 + CA265_RS01805 0.53 +0.2
451,377 - CA265_RS01805 0.54 -2.9
451,402 + CA265_RS01805 0.56 +1.5
451,406 + CA265_RS01805 0.56 -2.0
451,411 - CA265_RS01805 0.57 -1.7
451,411 - CA265_RS01805 0.57 +0.1
451,439 + CA265_RS01805 0.59 -2.9
451,492 + CA265_RS01805 0.64 -0.3
451,493 - CA265_RS01805 0.64 -1.2
451,510 + CA265_RS01805 0.65 -0.7
451,554 - CA265_RS01805 0.69 +1.5
451,591 - CA265_RS01805 0.72 -0.8
451,641 - CA265_RS01805 0.76 -0.8
451,649 - CA265_RS01805 0.77 -3.3
451,723 + CA265_RS01805 0.83 -2.0

Or see this region's nucleotide sequence