Experiment: Agro_defined_trehalose 1x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00750 and CA265_RS00755 are separated by 86 nucleotides CA265_RS00755 and CA265_RS00760 are separated by 71 nucleotides CA265_RS00760 and CA265_RS00765 are separated by 128 nucleotides
CA265_RS00750: CA265_RS00750 - hypothetical protein, at 181,608 to 182,831
_RS00750
CA265_RS00755: CA265_RS00755 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 182,918 to 183,757
_RS00755
CA265_RS00760: CA265_RS00760 - 2-deoxy-D-gluconate 3-dehydrogenase, at 183,829 to 184,593
_RS00760
CA265_RS00765: CA265_RS00765 - hypothetical protein, at 184,722 to 185,567
_RS00765
Position (kb) 183
184
185 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 182.830 kb on - strand at 182.838 kb on + strand at 182.839 kb on - strand at 182.841 kb on + strand at 182.846 kb on - strand at 182.853 kb on - strand at 182.962 kb on + strand at 182.963 kb on - strand at 183.036 kb on + strand, within CA265_RS00755 at 183.042 kb on + strand, within CA265_RS00755 at 183.060 kb on - strand, within CA265_RS00755 at 183.060 kb on - strand, within CA265_RS00755 at 183.061 kb on + strand, within CA265_RS00755 at 183.061 kb on + strand, within CA265_RS00755 at 183.061 kb on + strand, within CA265_RS00755 at 183.061 kb on + strand, within CA265_RS00755 at 183.062 kb on - strand, within CA265_RS00755 at 183.062 kb on - strand, within CA265_RS00755 at 183.062 kb on - strand, within CA265_RS00755 at 183.062 kb on - strand, within CA265_RS00755 at 183.062 kb on - strand, within CA265_RS00755 at 183.096 kb on + strand, within CA265_RS00755 at 183.160 kb on + strand, within CA265_RS00755 at 183.161 kb on - strand, within CA265_RS00755 at 183.163 kb on + strand at 183.181 kb on + strand, within CA265_RS00755 at 183.218 kb on + strand, within CA265_RS00755 at 183.219 kb on - strand, within CA265_RS00755 at 183.220 kb on + strand, within CA265_RS00755 at 183.275 kb on - strand, within CA265_RS00755 at 183.298 kb on - strand, within CA265_RS00755 at 183.299 kb on + strand, within CA265_RS00755 at 183.326 kb on - strand, within CA265_RS00755 at 183.326 kb on - strand, within CA265_RS00755 at 183.346 kb on - strand, within CA265_RS00755 at 183.461 kb on - strand, within CA265_RS00755 at 183.508 kb on + strand, within CA265_RS00755 at 183.517 kb on + strand, within CA265_RS00755 at 183.631 kb on + strand, within CA265_RS00755 at 183.632 kb on - strand, within CA265_RS00755 at 183.686 kb on - strand at 183.856 kb on - strand at 183.908 kb on + strand, within CA265_RS00760 at 183.909 kb on - strand, within CA265_RS00760 at 184.156 kb on + strand, within CA265_RS00760 at 184.157 kb on - strand, within CA265_RS00760 at 184.198 kb on - strand, within CA265_RS00760 at 184.269 kb on - strand, within CA265_RS00760 at 184.269 kb on - strand, within CA265_RS00760 at 184.379 kb on + strand, within CA265_RS00760 at 184.399 kb on + strand, within CA265_RS00760 at 184.400 kb on - strand, within CA265_RS00760 at 184.402 kb on - strand, within CA265_RS00760 at 184.416 kb on + strand, within CA265_RS00760 at 184.416 kb on + strand, within CA265_RS00760 at 184.455 kb on + strand, within CA265_RS00760 at 184.456 kb on - strand, within CA265_RS00760 at 184.457 kb on + strand, within CA265_RS00760 at 184.457 kb on + strand, within CA265_RS00760 at 184.458 kb on - strand, within CA265_RS00760 at 184.468 kb on - strand, within CA265_RS00760 at 184.518 kb on - strand at 184.543 kb on + strand at 184.591 kb on + strand at 184.592 kb on - strand at 184.592 kb on - strand at 184.680 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Agro_defined_trehalose 1x (C) remove 182,830 - +1.0 182,838 + +0.3 182,839 - -1.9 182,841 + -0.1 182,846 - +0.7 182,853 - +0.3 182,962 + -2.1 182,963 - +1.3 183,036 + CA265_RS00755 0.14 -0.3 183,042 + CA265_RS00755 0.15 -3.9 183,060 - CA265_RS00755 0.17 -2.0 183,060 - CA265_RS00755 0.17 +0.8 183,061 + CA265_RS00755 0.17 -1.3 183,061 + CA265_RS00755 0.17 -1.2 183,061 + CA265_RS00755 0.17 +0.2 183,061 + CA265_RS00755 0.17 +2.6 183,062 - CA265_RS00755 0.17 +0.1 183,062 - CA265_RS00755 0.17 +0.2 183,062 - CA265_RS00755 0.17 -4.1 183,062 - CA265_RS00755 0.17 +0.1 183,062 - CA265_RS00755 0.17 +1.9 183,096 + CA265_RS00755 0.21 +1.3 183,160 + CA265_RS00755 0.29 -2.2 183,161 - CA265_RS00755 0.29 +1.8 183,163 + +1.4 183,181 + CA265_RS00755 0.31 +0.4 183,218 + CA265_RS00755 0.36 -2.2 183,219 - CA265_RS00755 0.36 -1.2 183,220 + CA265_RS00755 0.36 +1.4 183,275 - CA265_RS00755 0.42 +0.8 183,298 - CA265_RS00755 0.45 +1.7 183,299 + CA265_RS00755 0.45 -4.2 183,326 - CA265_RS00755 0.49 +0.0 183,326 - CA265_RS00755 0.49 -0.2 183,346 - CA265_RS00755 0.51 -0.6 183,461 - CA265_RS00755 0.65 -0.2 183,508 + CA265_RS00755 0.70 -0.7 183,517 + CA265_RS00755 0.71 +1.5 183,631 + CA265_RS00755 0.85 +0.2 183,632 - CA265_RS00755 0.85 -1.3 183,686 - -1.1 183,856 - -2.8 183,908 + CA265_RS00760 0.10 -2.5 183,909 - CA265_RS00760 0.10 -1.8 184,156 + CA265_RS00760 0.43 +0.4 184,157 - CA265_RS00760 0.43 +1.4 184,198 - CA265_RS00760 0.48 +1.0 184,269 - CA265_RS00760 0.58 -2.0 184,269 - CA265_RS00760 0.58 +0.2 184,379 + CA265_RS00760 0.72 +0.4 184,399 + CA265_RS00760 0.75 -0.8 184,400 - CA265_RS00760 0.75 +1.0 184,402 - CA265_RS00760 0.75 -3.0 184,416 + CA265_RS00760 0.77 -2.0 184,416 + CA265_RS00760 0.77 -0.9 184,455 + CA265_RS00760 0.82 +0.9 184,456 - CA265_RS00760 0.82 +0.3 184,457 + CA265_RS00760 0.82 -0.3 184,457 + CA265_RS00760 0.82 -1.1 184,458 - CA265_RS00760 0.82 +0.2 184,468 - CA265_RS00760 0.84 +1.3 184,518 - +0.2 184,543 + -0.9 184,591 + -2.2 184,592 - -0.6 184,592 - -0.5 184,680 - +1.2
Or see this region's nucleotide sequence