Experiment: Agro_defined_trehalose 1x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00365 and CA265_RS00370 are separated by 1 nucleotides CA265_RS00370 and CA265_RS00375 are separated by 5 nucleotides CA265_RS00375 and CA265_RS00380 are separated by 11 nucleotides CA265_RS00380 and CA265_RS00385 are separated by 194 nucleotides
CA265_RS00365: CA265_RS00365 - two-component sensor histidine kinase, at 83,277 to 84,632
_RS00365
CA265_RS00370: CA265_RS00370 - DNA-binding response regulator, at 84,634 to 85,308
_RS00370
CA265_RS00375: CA265_RS00375 - hypothetical protein, at 85,314 to 86,165
_RS00375
CA265_RS00380: CA265_RS00380 - hypothetical protein, at 86,177 to 86,464
_RS00380
CA265_RS00385: CA265_RS00385 - hypothetical protein, at 86,659 to 87,456
_RS00385
Position (kb) 85
86
87 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 84.323 kb on + strand, within CA265_RS00365 at 84.333 kb on + strand, within CA265_RS00365 at 84.334 kb on - strand, within CA265_RS00365 at 84.360 kb on - strand, within CA265_RS00365 at 84.360 kb on - strand, within CA265_RS00365 at 84.421 kb on + strand, within CA265_RS00365 at 84.422 kb on - strand, within CA265_RS00365 at 84.428 kb on + strand, within CA265_RS00365 at 84.459 kb on + strand, within CA265_RS00365 at 84.561 kb on + strand at 84.561 kb on + strand at 84.562 kb on - strand at 84.577 kb on - strand at 84.607 kb on - strand at 84.690 kb on + strand at 84.693 kb on - strand at 84.777 kb on + strand, within CA265_RS00370 at 84.777 kb on + strand, within CA265_RS00370 at 84.777 kb on + strand, within CA265_RS00370 at 84.778 kb on - strand, within CA265_RS00370 at 84.886 kb on + strand, within CA265_RS00370 at 85.016 kb on + strand, within CA265_RS00370 at 85.016 kb on + strand, within CA265_RS00370 at 85.063 kb on - strand, within CA265_RS00370 at 85.085 kb on + strand, within CA265_RS00370 at 85.085 kb on + strand, within CA265_RS00370 at 85.169 kb on + strand, within CA265_RS00370 at 85.169 kb on + strand, within CA265_RS00370 at 85.170 kb on - strand, within CA265_RS00370 at 85.170 kb on - strand, within CA265_RS00370 at 85.175 kb on + strand, within CA265_RS00370 at 85.175 kb on + strand, within CA265_RS00370 at 85.194 kb on + strand, within CA265_RS00370 at 85.194 kb on + strand, within CA265_RS00370 at 85.195 kb on - strand, within CA265_RS00370 at 85.209 kb on + strand, within CA265_RS00370 at 85.215 kb on + strand, within CA265_RS00370 at 85.216 kb on - strand, within CA265_RS00370 at 85.216 kb on - strand, within CA265_RS00370 at 85.389 kb on + strand at 85.389 kb on + strand at 85.391 kb on + strand at 85.403 kb on - strand, within CA265_RS00375 at 85.441 kb on - strand, within CA265_RS00375 at 85.467 kb on + strand, within CA265_RS00375 at 85.534 kb on - strand, within CA265_RS00375 at 85.536 kb on - strand, within CA265_RS00375 at 85.592 kb on + strand, within CA265_RS00375 at 85.594 kb on + strand, within CA265_RS00375 at 85.747 kb on - strand, within CA265_RS00375 at 85.764 kb on - strand, within CA265_RS00375 at 85.803 kb on - strand, within CA265_RS00375 at 85.858 kb on + strand, within CA265_RS00375 at 85.858 kb on + strand, within CA265_RS00375 at 85.858 kb on + strand, within CA265_RS00375 at 85.859 kb on - strand, within CA265_RS00375 at 85.900 kb on + strand, within CA265_RS00375 at 85.900 kb on + strand, within CA265_RS00375 at 85.911 kb on + strand, within CA265_RS00375 at 85.912 kb on - strand, within CA265_RS00375 at 86.010 kb on + strand, within CA265_RS00375 at 86.010 kb on + strand, within CA265_RS00375 at 86.014 kb on + strand, within CA265_RS00375 at 86.014 kb on + strand, within CA265_RS00375 at 86.015 kb on - strand, within CA265_RS00375 at 86.057 kb on + strand, within CA265_RS00375 at 86.061 kb on - strand, within CA265_RS00375 at 86.063 kb on + strand, within CA265_RS00375 at 86.064 kb on - strand, within CA265_RS00375 at 86.065 kb on + strand, within CA265_RS00375 at 86.066 kb on - strand, within CA265_RS00375 at 86.082 kb on - strand at 86.082 kb on - strand at 86.116 kb on - strand at 86.157 kb on + strand at 86.157 kb on + strand at 86.167 kb on + strand at 86.167 kb on + strand at 86.167 kb on + strand at 86.225 kb on + strand, within CA265_RS00380 at 86.226 kb on - strand, within CA265_RS00380 at 86.226 kb on - strand, within CA265_RS00380 at 86.230 kb on + strand, within CA265_RS00380 at 86.231 kb on - strand, within CA265_RS00380 at 86.390 kb on - strand, within CA265_RS00380 at 86.390 kb on - strand, within CA265_RS00380 at 86.523 kb on + strand at 86.523 kb on + strand at 86.524 kb on - strand at 86.524 kb on - strand at 86.524 kb on - strand at 86.654 kb on + strand at 86.654 kb on + strand at 86.659 kb on - strand at 86.854 kb on + strand, within CA265_RS00385 at 86.858 kb on + strand, within CA265_RS00385 at 86.858 kb on + strand, within CA265_RS00385 at 86.880 kb on - strand, within CA265_RS00385 at 86.914 kb on - strand, within CA265_RS00385 at 86.923 kb on - strand, within CA265_RS00385 at 86.979 kb on - strand, within CA265_RS00385 at 86.979 kb on - strand, within CA265_RS00385 at 86.997 kb on + strand, within CA265_RS00385
Per-strain Table
Position Strand Gene LocusTag Fraction Agro_defined_trehalose 1x (C) remove 84,323 + CA265_RS00365 0.77 +0.8 84,333 + CA265_RS00365 0.78 -2.2 84,334 - CA265_RS00365 0.78 +0.5 84,360 - CA265_RS00365 0.80 +0.0 84,360 - CA265_RS00365 0.80 -1.4 84,421 + CA265_RS00365 0.84 -0.2 84,422 - CA265_RS00365 0.84 -2.9 84,428 + CA265_RS00365 0.85 +1.2 84,459 + CA265_RS00365 0.87 +0.4 84,561 + -1.5 84,561 + -0.9 84,562 - +1.8 84,577 - -0.5 84,607 - -2.4 84,690 + -0.3 84,693 - -1.0 84,777 + CA265_RS00370 0.21 +1.2 84,777 + CA265_RS00370 0.21 +1.0 84,777 + CA265_RS00370 0.21 +0.9 84,778 - CA265_RS00370 0.21 -0.3 84,886 + CA265_RS00370 0.37 +1.1 85,016 + CA265_RS00370 0.57 +2.0 85,016 + CA265_RS00370 0.57 -0.3 85,063 - CA265_RS00370 0.64 +2.2 85,085 + CA265_RS00370 0.67 +0.3 85,085 + CA265_RS00370 0.67 +5.3 85,169 + CA265_RS00370 0.79 +2.3 85,169 + CA265_RS00370 0.79 +0.9 85,170 - CA265_RS00370 0.79 -1.4 85,170 - CA265_RS00370 0.79 +0.7 85,175 + CA265_RS00370 0.80 -0.3 85,175 + CA265_RS00370 0.80 +0.4 85,194 + CA265_RS00370 0.83 -0.4 85,194 + CA265_RS00370 0.83 -0.3 85,195 - CA265_RS00370 0.83 -1.6 85,209 + CA265_RS00370 0.85 -1.4 85,215 + CA265_RS00370 0.86 -1.1 85,216 - CA265_RS00370 0.86 -1.5 85,216 - CA265_RS00370 0.86 -0.8 85,389 + +1.2 85,389 + +1.3 85,391 + -0.6 85,403 - CA265_RS00375 0.10 +2.2 85,441 - CA265_RS00375 0.15 -1.9 85,467 + CA265_RS00375 0.18 +1.7 85,534 - CA265_RS00375 0.26 -0.7 85,536 - CA265_RS00375 0.26 -1.2 85,592 + CA265_RS00375 0.33 -1.4 85,594 + CA265_RS00375 0.33 +0.1 85,747 - CA265_RS00375 0.51 -1.4 85,764 - CA265_RS00375 0.53 +2.5 85,803 - CA265_RS00375 0.57 -2.1 85,858 + CA265_RS00375 0.64 +0.1 85,858 + CA265_RS00375 0.64 -3.8 85,858 + CA265_RS00375 0.64 -0.7 85,859 - CA265_RS00375 0.64 +0.5 85,900 + CA265_RS00375 0.69 -0.5 85,900 + CA265_RS00375 0.69 -0.7 85,911 + CA265_RS00375 0.70 +0.9 85,912 - CA265_RS00375 0.70 +0.1 86,010 + CA265_RS00375 0.82 +0.2 86,010 + CA265_RS00375 0.82 -3.2 86,014 + CA265_RS00375 0.82 -0.9 86,014 + CA265_RS00375 0.82 -0.3 86,015 - CA265_RS00375 0.82 +0.3 86,057 + CA265_RS00375 0.87 +0.2 86,061 - CA265_RS00375 0.88 +0.5 86,063 + CA265_RS00375 0.88 -1.7 86,064 - CA265_RS00375 0.88 -0.6 86,065 + CA265_RS00375 0.88 -0.0 86,066 - CA265_RS00375 0.88 -0.3 86,082 - +0.5 86,082 - +0.2 86,116 - -0.8 86,157 + -0.2 86,157 + +1.6 86,167 + -1.9 86,167 + -0.8 86,167 + +0.2 86,225 + CA265_RS00380 0.17 +0.8 86,226 - CA265_RS00380 0.17 +0.3 86,226 - CA265_RS00380 0.17 +0.3 86,230 + CA265_RS00380 0.18 +0.1 86,231 - CA265_RS00380 0.19 +1.5 86,390 - CA265_RS00380 0.74 -0.2 86,390 - CA265_RS00380 0.74 +0.6 86,523 + -0.5 86,523 + -0.6 86,524 - +1.1 86,524 - +3.6 86,524 - -1.0 86,654 + -1.5 86,654 + -1.8 86,659 - -1.2 86,854 + CA265_RS00385 0.24 -1.6 86,858 + CA265_RS00385 0.25 +1.0 86,858 + CA265_RS00385 0.25 +0.4 86,880 - CA265_RS00385 0.28 -1.1 86,914 - CA265_RS00385 0.32 +2.8 86,923 - CA265_RS00385 0.33 -0.2 86,979 - CA265_RS00385 0.40 +1.9 86,979 - CA265_RS00385 0.40 +0.1 86,997 + CA265_RS00385 0.42 +2.3
Or see this region's nucleotide sequence