Experiment: Benzalkonium Chloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26830 and AO356_26835 are separated by 503 nucleotides AO356_26835 and AO356_26840 are separated by 16 nucleotides AO356_26840 and AO356_26845 are separated by 15 nucleotides
AO356_26830: AO356_26830 - transcriptional regulator, at 6,109,170 to 6,109,874
_26830
AO356_26835: AO356_26835 - type VI secretion protein ImpA, at 6,110,378 to 6,112,603
_26835
AO356_26840: AO356_26840 - hypothetical protein, at 6,112,620 to 6,113,075
_26840
AO356_26845: AO356_26845 - hypothetical protein, at 6,113,091 to 6,114,206
_26845
Position (kb)
6110
6111
6112
6113 Strain fitness (log2 ratio)
-2
-1
0
1 at 6109.585 kb on + strand, within AO356_26830 at 6109.585 kb on + strand, within AO356_26830 at 6109.697 kb on - strand, within AO356_26830 at 6109.697 kb on - strand, within AO356_26830 at 6109.741 kb on + strand, within AO356_26830 at 6109.742 kb on - strand, within AO356_26830 at 6109.759 kb on + strand, within AO356_26830 at 6109.802 kb on - strand, within AO356_26830 at 6109.802 kb on - strand, within AO356_26830 at 6109.802 kb on - strand, within AO356_26830 at 6109.831 kb on + strand at 6109.831 kb on + strand at 6109.831 kb on + strand at 6109.832 kb on - strand at 6109.915 kb on + strand at 6110.056 kb on + strand at 6110.086 kb on + strand at 6110.086 kb on + strand at 6110.087 kb on - strand at 6110.134 kb on + strand at 6110.135 kb on - strand at 6110.153 kb on + strand at 6110.212 kb on + strand at 6110.541 kb on + strand at 6110.541 kb on + strand at 6110.542 kb on - strand at 6110.799 kb on - strand, within AO356_26835 at 6110.825 kb on + strand, within AO356_26835 at 6110.879 kb on + strand, within AO356_26835 at 6110.879 kb on + strand, within AO356_26835 at 6110.879 kb on + strand, within AO356_26835 at 6110.879 kb on + strand, within AO356_26835 at 6110.880 kb on - strand, within AO356_26835 at 6110.880 kb on - strand, within AO356_26835 at 6110.880 kb on - strand, within AO356_26835 at 6110.880 kb on - strand, within AO356_26835 at 6110.880 kb on - strand, within AO356_26835 at 6110.880 kb on - strand, within AO356_26835 at 6110.882 kb on + strand, within AO356_26835 at 6110.883 kb on - strand, within AO356_26835 at 6110.933 kb on + strand, within AO356_26835 at 6110.933 kb on + strand, within AO356_26835 at 6110.933 kb on + strand, within AO356_26835 at 6110.933 kb on + strand, within AO356_26835 at 6110.934 kb on - strand, within AO356_26835 at 6110.934 kb on - strand, within AO356_26835 at 6110.960 kb on + strand, within AO356_26835 at 6110.979 kb on - strand, within AO356_26835 at 6111.071 kb on + strand, within AO356_26835 at 6111.170 kb on + strand, within AO356_26835 at 6111.170 kb on + strand, within AO356_26835 at 6111.171 kb on - strand, within AO356_26835 at 6111.197 kb on + strand, within AO356_26835 at 6111.198 kb on - strand, within AO356_26835 at 6111.303 kb on - strand, within AO356_26835 at 6111.329 kb on + strand, within AO356_26835 at 6111.734 kb on + strand, within AO356_26835 at 6111.758 kb on + strand, within AO356_26835 at 6112.601 kb on + strand at 6112.635 kb on + strand at 6112.635 kb on + strand at 6112.635 kb on + strand at 6112.636 kb on - strand at 6113.013 kb on + strand, within AO356_26840 at 6113.073 kb on + strand at 6113.081 kb on + strand at 6113.082 kb on - strand at 6113.338 kb on + strand, within AO356_26845 at 6113.353 kb on - strand, within AO356_26845 at 6113.512 kb on - strand, within AO356_26845
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.008 mg/ml remove 6,109,585 + AO356_26830 0.59 -0.2 6,109,585 + AO356_26830 0.59 -0.5 6,109,697 - AO356_26830 0.75 -0.2 6,109,697 - AO356_26830 0.75 +1.0 6,109,741 + AO356_26830 0.81 -0.3 6,109,742 - AO356_26830 0.81 +0.4 6,109,759 + AO356_26830 0.84 -1.0 6,109,802 - AO356_26830 0.90 -0.7 6,109,802 - AO356_26830 0.90 +0.2 6,109,802 - AO356_26830 0.90 +0.3 6,109,831 + +1.3 6,109,831 + +0.7 6,109,831 + +0.5 6,109,832 - +1.0 6,109,915 + +0.9 6,110,056 + -0.8 6,110,086 + +0.6 6,110,086 + +1.7 6,110,087 - +0.2 6,110,134 + -0.2 6,110,135 - +0.5 6,110,153 + +1.0 6,110,212 + -0.2 6,110,541 + +0.8 6,110,541 + +0.1 6,110,542 - +0.1 6,110,799 - AO356_26835 0.19 +1.0 6,110,825 + AO356_26835 0.20 -0.5 6,110,879 + AO356_26835 0.23 +0.1 6,110,879 + AO356_26835 0.23 +0.0 6,110,879 + AO356_26835 0.23 +0.1 6,110,879 + AO356_26835 0.23 +0.9 6,110,880 - AO356_26835 0.23 -0.9 6,110,880 - AO356_26835 0.23 +1.1 6,110,880 - AO356_26835 0.23 +0.7 6,110,880 - AO356_26835 0.23 +0.8 6,110,880 - AO356_26835 0.23 +0.1 6,110,880 - AO356_26835 0.23 -1.1 6,110,882 + AO356_26835 0.23 +0.5 6,110,883 - AO356_26835 0.23 +0.1 6,110,933 + AO356_26835 0.25 -2.0 6,110,933 + AO356_26835 0.25 +0.4 6,110,933 + AO356_26835 0.25 -1.1 6,110,933 + AO356_26835 0.25 -0.4 6,110,934 - AO356_26835 0.25 -1.0 6,110,934 - AO356_26835 0.25 +1.1 6,110,960 + AO356_26835 0.26 -0.4 6,110,979 - AO356_26835 0.27 +0.8 6,111,071 + AO356_26835 0.31 +0.3 6,111,170 + AO356_26835 0.36 +0.8 6,111,170 + AO356_26835 0.36 +0.5 6,111,171 - AO356_26835 0.36 +1.0 6,111,197 + AO356_26835 0.37 -1.0 6,111,198 - AO356_26835 0.37 +0.4 6,111,303 - AO356_26835 0.42 -0.3 6,111,329 + AO356_26835 0.43 +0.2 6,111,734 + AO356_26835 0.61 -0.0 6,111,758 + AO356_26835 0.62 +0.3 6,112,601 + +0.0 6,112,635 + +0.1 6,112,635 + +0.3 6,112,635 + +0.7 6,112,636 - -0.1 6,113,013 + AO356_26840 0.86 -0.2 6,113,073 + +1.2 6,113,081 + -0.8 6,113,082 - +0.7 6,113,338 + AO356_26845 0.22 +0.1 6,113,353 - AO356_26845 0.23 -2.0 6,113,512 - AO356_26845 0.38 +0.9
Or see this region's nucleotide sequence