Experiment: Benzalkonium Chloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26270 and AO356_26275 are separated by 173 nucleotides AO356_26275 and AO356_26280 are separated by 241 nucleotides AO356_26280 and AO356_26285 overlap by 1 nucleotides
AO356_26270: AO356_26270 - histidine kinase, at 5,950,753 to 5,951,937
_26270
AO356_26275: AO356_26275 - cag pathogenicity island protein Cag5, at 5,952,111 to 5,952,632
_26275
AO356_26280: AO356_26280 - RNA polymerase subunit sigma, at 5,952,874 to 5,953,383
_26280
AO356_26285: AO356_26285 - sugar ABC transporter substrate-binding protein, at 5,953,383 to 5,954,327
_26285
Position (kb) 5952
5953 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5951.153 kb on + strand, within AO356_26270 at 5951.154 kb on - strand, within AO356_26270 at 5951.173 kb on + strand, within AO356_26270 at 5951.174 kb on - strand, within AO356_26270 at 5951.174 kb on - strand, within AO356_26270 at 5951.355 kb on - strand, within AO356_26270 at 5952.012 kb on + strand at 5952.012 kb on + strand at 5952.012 kb on + strand at 5952.013 kb on - strand at 5952.028 kb on + strand at 5952.189 kb on + strand, within AO356_26275 at 5952.189 kb on + strand, within AO356_26275 at 5952.189 kb on + strand, within AO356_26275 at 5952.189 kb on + strand, within AO356_26275 at 5952.189 kb on + strand, within AO356_26275 at 5952.190 kb on - strand, within AO356_26275 at 5952.190 kb on - strand, within AO356_26275 at 5952.190 kb on - strand, within AO356_26275 at 5952.190 kb on - strand, within AO356_26275 at 5952.190 kb on - strand, within AO356_26275 at 5952.310 kb on - strand, within AO356_26275 at 5952.382 kb on - strand, within AO356_26275 at 5952.477 kb on + strand, within AO356_26275 at 5952.478 kb on - strand, within AO356_26275 at 5952.478 kb on - strand, within AO356_26275 at 5952.479 kb on + strand, within AO356_26275 at 5952.480 kb on - strand, within AO356_26275 at 5952.531 kb on + strand, within AO356_26275 at 5952.543 kb on + strand, within AO356_26275 at 5952.543 kb on + strand, within AO356_26275 at 5952.786 kb on + strand at 5952.888 kb on + strand at 5952.888 kb on + strand at 5952.888 kb on + strand at 5952.889 kb on - strand at 5953.064 kb on - strand, within AO356_26280 at 5953.102 kb on + strand, within AO356_26280 at 5953.129 kb on + strand, within AO356_26280 at 5953.130 kb on - strand, within AO356_26280 at 5953.134 kb on - strand, within AO356_26280 at 5953.134 kb on - strand, within AO356_26280 at 5953.134 kb on - strand, within AO356_26280 at 5953.339 kb on + strand at 5953.339 kb on + strand at 5953.354 kb on + strand at 5953.355 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.008 mg/ml remove 5,951,153 + AO356_26270 0.34 -1.1 5,951,154 - AO356_26270 0.34 +0.6 5,951,173 + AO356_26270 0.35 -0.3 5,951,174 - AO356_26270 0.36 +0.4 5,951,174 - AO356_26270 0.36 -1.2 5,951,355 - AO356_26270 0.51 -0.1 5,952,012 + -0.1 5,952,012 + +0.8 5,952,012 + -0.1 5,952,013 - +0.5 5,952,028 + +1.5 5,952,189 + AO356_26275 0.15 -0.2 5,952,189 + AO356_26275 0.15 -0.1 5,952,189 + AO356_26275 0.15 -0.2 5,952,189 + AO356_26275 0.15 -0.4 5,952,189 + AO356_26275 0.15 -0.2 5,952,190 - AO356_26275 0.15 -0.1 5,952,190 - AO356_26275 0.15 +0.3 5,952,190 - AO356_26275 0.15 -0.5 5,952,190 - AO356_26275 0.15 +0.3 5,952,190 - AO356_26275 0.15 +0.0 5,952,310 - AO356_26275 0.38 +0.2 5,952,382 - AO356_26275 0.52 -2.4 5,952,477 + AO356_26275 0.70 -0.1 5,952,478 - AO356_26275 0.70 +0.6 5,952,478 - AO356_26275 0.70 +0.5 5,952,479 + AO356_26275 0.70 -0.6 5,952,480 - AO356_26275 0.71 +0.5 5,952,531 + AO356_26275 0.80 +0.3 5,952,543 + AO356_26275 0.83 +0.5 5,952,543 + AO356_26275 0.83 +0.0 5,952,786 + -0.1 5,952,888 + +0.9 5,952,888 + +2.0 5,952,888 + +0.1 5,952,889 - +2.3 5,953,064 - AO356_26280 0.37 -0.2 5,953,102 + AO356_26280 0.45 +1.2 5,953,129 + AO356_26280 0.50 +0.3 5,953,130 - AO356_26280 0.50 +0.1 5,953,134 - AO356_26280 0.51 +0.5 5,953,134 - AO356_26280 0.51 -1.5 5,953,134 - AO356_26280 0.51 +0.6 5,953,339 + -0.6 5,953,339 + +0.2 5,953,354 + -0.0 5,953,355 - +0.2
Or see this region's nucleotide sequence