Experiment: Benzalkonium Chloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24175 and AO356_24180 are separated by 89 nucleotides AO356_24180 and AO356_24185 are separated by 335 nucleotides AO356_24185 and AO356_24190 are separated by 273 nucleotides
AO356_24175: AO356_24175 - formate dehydrogenase, at 5,422,645 to 5,422,866
_24175
AO356_24180: AO356_24180 - nematocidal protein, at 5,422,956 to 5,423,486
_24180
AO356_24185: AO356_24185 - isochorismate-pyruvate lyase, at 5,423,822 to 5,424,142
_24185
AO356_24190: AO356_24190 - GntR family transcriptional regulator, at 5,424,416 to 5,425,129
_24190
Position (kb) 5423
5424
5425 Strain fitness (log2 ratio) -1
0
1 at 5422.864 kb on + strand at 5422.947 kb on - strand at 5422.947 kb on - strand at 5422.957 kb on + strand at 5422.957 kb on + strand at 5422.957 kb on + strand at 5422.978 kb on + strand at 5422.978 kb on + strand at 5422.979 kb on - strand at 5422.979 kb on - strand at 5423.048 kb on - strand, within AO356_24180 at 5423.090 kb on + strand, within AO356_24180 at 5423.090 kb on + strand, within AO356_24180 at 5423.091 kb on - strand, within AO356_24180 at 5423.091 kb on - strand, within AO356_24180 at 5423.092 kb on + strand, within AO356_24180 at 5423.092 kb on + strand, within AO356_24180 at 5423.092 kb on + strand, within AO356_24180 at 5423.092 kb on + strand, within AO356_24180 at 5423.092 kb on + strand, within AO356_24180 at 5423.092 kb on + strand, within AO356_24180 at 5423.093 kb on - strand, within AO356_24180 at 5423.093 kb on - strand, within AO356_24180 at 5423.140 kb on + strand, within AO356_24180 at 5423.197 kb on + strand, within AO356_24180 at 5423.197 kb on + strand, within AO356_24180 at 5423.198 kb on - strand, within AO356_24180 at 5423.198 kb on - strand, within AO356_24180 at 5423.307 kb on + strand, within AO356_24180 at 5423.307 kb on + strand, within AO356_24180 at 5423.579 kb on + strand at 5423.580 kb on - strand at 5423.594 kb on + strand at 5423.594 kb on + strand at 5423.595 kb on - strand at 5423.892 kb on + strand, within AO356_24185 at 5424.023 kb on + strand, within AO356_24185 at 5424.023 kb on + strand, within AO356_24185 at 5424.024 kb on - strand, within AO356_24185 at 5424.024 kb on - strand, within AO356_24185 at 5424.027 kb on + strand, within AO356_24185 at 5424.027 kb on + strand, within AO356_24185 at 5424.027 kb on + strand, within AO356_24185 at 5424.028 kb on - strand, within AO356_24185 at 5424.028 kb on - strand, within AO356_24185 at 5424.144 kb on + strand at 5424.145 kb on - strand at 5424.145 kb on - strand at 5424.145 kb on - strand at 5424.145 kb on - strand at 5424.199 kb on + strand at 5424.199 kb on + strand at 5424.200 kb on - strand at 5424.319 kb on - strand at 5424.319 kb on - strand at 5424.418 kb on - strand at 5424.506 kb on + strand, within AO356_24190 at 5424.506 kb on + strand, within AO356_24190 at 5424.507 kb on - strand, within AO356_24190 at 5424.507 kb on - strand, within AO356_24190 at 5424.694 kb on + strand, within AO356_24190 at 5424.694 kb on + strand, within AO356_24190 at 5424.909 kb on + strand, within AO356_24190 at 5424.910 kb on - strand, within AO356_24190 at 5424.910 kb on - strand, within AO356_24190 at 5424.910 kb on - strand, within AO356_24190 at 5424.910 kb on - strand, within AO356_24190 at 5424.947 kb on + strand, within AO356_24190 at 5424.948 kb on - strand, within AO356_24190 at 5425.062 kb on + strand at 5425.063 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.008 mg/ml remove 5,422,864 + +0.8 5,422,947 - -0.1 5,422,947 - -0.2 5,422,957 + +0.4 5,422,957 + +0.7 5,422,957 + +0.8 5,422,978 + +0.2 5,422,978 + -1.0 5,422,979 - +0.9 5,422,979 - -0.3 5,423,048 - AO356_24180 0.17 +0.0 5,423,090 + AO356_24180 0.25 +0.2 5,423,090 + AO356_24180 0.25 +0.3 5,423,091 - AO356_24180 0.25 -0.1 5,423,091 - AO356_24180 0.25 +1.2 5,423,092 + AO356_24180 0.26 +0.7 5,423,092 + AO356_24180 0.26 -0.4 5,423,092 + AO356_24180 0.26 -0.2 5,423,092 + AO356_24180 0.26 -0.6 5,423,092 + AO356_24180 0.26 +0.1 5,423,092 + AO356_24180 0.26 +0.5 5,423,093 - AO356_24180 0.26 +1.5 5,423,093 - AO356_24180 0.26 -0.8 5,423,140 + AO356_24180 0.35 -0.2 5,423,197 + AO356_24180 0.45 -0.1 5,423,197 + AO356_24180 0.45 +0.1 5,423,198 - AO356_24180 0.46 -0.4 5,423,198 - AO356_24180 0.46 +0.4 5,423,307 + AO356_24180 0.66 -0.9 5,423,307 + AO356_24180 0.66 -0.4 5,423,579 + +0.1 5,423,580 - -0.2 5,423,594 + +0.6 5,423,594 + +0.7 5,423,595 - +0.9 5,423,892 + AO356_24185 0.22 -0.8 5,424,023 + AO356_24185 0.63 -0.3 5,424,023 + AO356_24185 0.63 +0.4 5,424,024 - AO356_24185 0.63 +0.6 5,424,024 - AO356_24185 0.63 -0.5 5,424,027 + AO356_24185 0.64 +0.2 5,424,027 + AO356_24185 0.64 -0.6 5,424,027 + AO356_24185 0.64 -0.8 5,424,028 - AO356_24185 0.64 +0.2 5,424,028 - AO356_24185 0.64 -0.1 5,424,144 + +0.8 5,424,145 - +0.7 5,424,145 - +0.2 5,424,145 - +1.3 5,424,145 - -0.2 5,424,199 + -1.0 5,424,199 + +0.5 5,424,200 - +0.5 5,424,319 - -0.9 5,424,319 - -0.7 5,424,418 - -0.7 5,424,506 + AO356_24190 0.13 +0.0 5,424,506 + AO356_24190 0.13 -0.5 5,424,507 - AO356_24190 0.13 -0.1 5,424,507 - AO356_24190 0.13 -1.1 5,424,694 + AO356_24190 0.39 +0.1 5,424,694 + AO356_24190 0.39 +0.5 5,424,909 + AO356_24190 0.69 -0.9 5,424,910 - AO356_24190 0.69 +0.2 5,424,910 - AO356_24190 0.69 +0.5 5,424,910 - AO356_24190 0.69 -0.2 5,424,910 - AO356_24190 0.69 +0.3 5,424,947 + AO356_24190 0.74 -0.1 5,424,948 - AO356_24190 0.75 +0.1 5,425,062 + -0.1 5,425,063 - -0.2
Or see this region's nucleotide sequence